Iron in PDB 8d9m: Cryo-Em of the Omcz Nanowires From Geobacter Sulfurreducens
Iron Binding Sites:
The binding sites of Iron atom in the Cryo-Em of the Omcz Nanowires From Geobacter Sulfurreducens
(pdb code 8d9m). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 8 binding sites of Iron where determined in the
Cryo-Em of the Omcz Nanowires From Geobacter Sulfurreducens, PDB code: 8d9m:
Jump to Iron binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
Iron binding site 1 out
of 8 in 8d9m
Go back to
Iron Binding Sites List in 8d9m
Iron binding site 1 out
of 8 in the Cryo-Em of the Omcz Nanowires From Geobacter Sulfurreducens
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Cryo-Em of the Omcz Nanowires From Geobacter Sulfurreducens within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe601
b:115.8
occ:1.00
|
FE
|
A:HEC601
|
0.0
|
115.8
|
1.0
|
|
NA
|
A:HEC601
|
2.0
|
115.8
|
1.0
|
|
NC
|
A:HEC601
|
2.0
|
115.8
|
1.0
|
|
NE2
|
A:HIS65
|
2.0
|
123.6
|
1.0
|
|
NE2
|
A:HIS93
|
2.0
|
116.9
|
1.0
|
|
NB
|
A:HEC601
|
2.1
|
115.8
|
1.0
|
|
ND
|
A:HEC601
|
2.1
|
115.8
|
1.0
|
|
CE1
|
A:HIS65
|
2.5
|
123.6
|
1.0
|
|
CD2
|
A:HIS93
|
2.9
|
116.9
|
1.0
|
|
C1A
|
A:HEC601
|
3.0
|
115.8
|
1.0
|
|
C1C
|
A:HEC601
|
3.0
|
115.8
|
1.0
|
|
C4A
|
A:HEC601
|
3.0
|
115.8
|
1.0
|
|
C4C
|
A:HEC601
|
3.0
|
115.8
|
1.0
|
|
CE1
|
A:HIS93
|
3.1
|
116.9
|
1.0
|
|
C1D
|
A:HEC601
|
3.1
|
115.8
|
1.0
|
|
C4B
|
A:HEC601
|
3.1
|
115.8
|
1.0
|
|
C4D
|
A:HEC601
|
3.1
|
115.8
|
1.0
|
|
C1B
|
A:HEC601
|
3.1
|
115.8
|
1.0
|
|
CD2
|
A:HIS65
|
3.2
|
123.6
|
1.0
|
|
CHA
|
A:HEC601
|
3.4
|
115.8
|
1.0
|
|
CHC
|
A:HEC601
|
3.4
|
115.8
|
1.0
|
|
CHD
|
A:HEC601
|
3.4
|
115.8
|
1.0
|
|
CHB
|
A:HEC601
|
3.4
|
115.8
|
1.0
|
|
ND1
|
A:HIS65
|
3.7
|
123.6
|
1.0
|
|
CG
|
A:HIS65
|
4.1
|
123.6
|
1.0
|
|
CG
|
A:HIS93
|
4.1
|
116.9
|
1.0
|
|
ND1
|
A:HIS93
|
4.1
|
116.9
|
1.0
|
|
C2A
|
A:HEC601
|
4.2
|
115.8
|
1.0
|
|
C3A
|
A:HEC601
|
4.2
|
115.8
|
1.0
|
|
C2C
|
A:HEC601
|
4.3
|
115.8
|
1.0
|
|
C3C
|
A:HEC601
|
4.3
|
115.8
|
1.0
|
|
C2D
|
A:HEC601
|
4.3
|
115.8
|
1.0
|
|
C3B
|
A:HEC601
|
4.3
|
115.8
|
1.0
|
|
C2B
|
A:HEC601
|
4.3
|
115.8
|
1.0
|
|
C3D
|
A:HEC601
|
4.3
|
115.8
|
1.0
|
|
Iron binding site 2 out
of 8 in 8d9m
Go back to
Iron Binding Sites List in 8d9m
Iron binding site 2 out
of 8 in the Cryo-Em of the Omcz Nanowires From Geobacter Sulfurreducens
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Cryo-Em of the Omcz Nanowires From Geobacter Sulfurreducens within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe602
b:123.8
occ:1.00
|
FE
|
A:HEC602
|
0.0
|
123.8
|
1.0
|
|
NA
|
A:HEC602
|
2.0
|
123.8
|
1.0
|
|
NC
|
A:HEC602
|
2.0
|
123.8
|
1.0
|
|
NE2
|
A:HIS115
|
2.0
|
128.0
|
1.0
|
|
NB
|
A:HEC602
|
2.0
|
123.8
|
1.0
|
|
ND
|
A:HEC602
|
2.1
|
123.8
|
1.0
|
|
NE2
|
A:HIS64
|
2.1
|
126.7
|
1.0
|
|
CE1
|
A:HIS115
|
2.9
|
128.0
|
1.0
|
|
CE1
|
A:HIS64
|
3.0
|
126.7
|
1.0
|
|
C1A
|
A:HEC602
|
3.0
|
123.8
|
1.0
|
|
C1C
|
A:HEC602
|
3.0
|
123.8
|
1.0
|
|
C4D
|
A:HEC602
|
3.0
|
123.8
|
1.0
|
|
C4B
|
A:HEC602
|
3.0
|
123.8
|
1.0
|
|
C4A
|
A:HEC602
|
3.1
|
123.8
|
1.0
|
|
C4C
|
A:HEC602
|
3.1
|
123.8
|
1.0
|
|
C1B
|
A:HEC602
|
3.1
|
123.8
|
1.0
|
|
C1D
|
A:HEC602
|
3.1
|
123.8
|
1.0
|
|
CD2
|
A:HIS64
|
3.1
|
126.7
|
1.0
|
|
CD2
|
A:HIS115
|
3.1
|
128.0
|
1.0
|
|
CHA
|
A:HEC602
|
3.4
|
123.8
|
1.0
|
|
CHC
|
A:HEC602
|
3.4
|
123.8
|
1.0
|
|
CHB
|
A:HEC602
|
3.5
|
123.8
|
1.0
|
|
CHD
|
A:HEC602
|
3.5
|
123.8
|
1.0
|
|
ND1
|
A:HIS115
|
4.0
|
128.0
|
1.0
|
|
ND1
|
A:HIS64
|
4.1
|
126.7
|
1.0
|
|
CG
|
A:HIS115
|
4.2
|
128.0
|
1.0
|
|
CG
|
A:HIS64
|
4.2
|
126.7
|
1.0
|
|
C2A
|
A:HEC602
|
4.2
|
123.8
|
1.0
|
|
C3A
|
A:HEC602
|
4.3
|
123.8
|
1.0
|
|
C2C
|
A:HEC602
|
4.3
|
123.8
|
1.0
|
|
C3C
|
A:HEC602
|
4.3
|
123.8
|
1.0
|
|
C3B
|
A:HEC602
|
4.3
|
123.8
|
1.0
|
|
C3D
|
A:HEC602
|
4.3
|
123.8
|
1.0
|
|
C2B
|
A:HEC602
|
4.3
|
123.8
|
1.0
|
|
C2D
|
A:HEC602
|
4.3
|
123.8
|
1.0
|
|
CMA
|
A:HEC603
|
4.7
|
133.4
|
1.0
|
|
CMD
|
A:HEC601
|
4.9
|
115.8
|
1.0
|
|
Iron binding site 3 out
of 8 in 8d9m
Go back to
Iron Binding Sites List in 8d9m
Iron binding site 3 out
of 8 in the Cryo-Em of the Omcz Nanowires From Geobacter Sulfurreducens
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Cryo-Em of the Omcz Nanowires From Geobacter Sulfurreducens within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe603
b:133.4
occ:1.00
|
FE
|
A:HEC603
|
0.0
|
133.4
|
1.0
|
|
NC
|
A:HEC603
|
2.0
|
133.4
|
1.0
|
|
NA
|
A:HEC603
|
2.0
|
133.4
|
1.0
|
|
NE2
|
A:HIS120
|
2.0
|
134.6
|
1.0
|
|
ND
|
A:HEC603
|
2.0
|
133.4
|
1.0
|
|
NB
|
A:HEC603
|
2.0
|
133.4
|
1.0
|
|
NE2
|
A:HIS54
|
2.0
|
146.0
|
1.0
|
|
CD2
|
A:HIS54
|
2.5
|
146.0
|
1.0
|
|
CD2
|
A:HIS120
|
2.5
|
134.6
|
1.0
|
|
C1A
|
A:HEC603
|
3.0
|
133.4
|
1.0
|
|
C1C
|
A:HEC603
|
3.0
|
133.4
|
1.0
|
|
C4B
|
A:HEC603
|
3.0
|
133.4
|
1.0
|
|
C4D
|
A:HEC603
|
3.0
|
133.4
|
1.0
|
|
C4C
|
A:HEC603
|
3.1
|
133.4
|
1.0
|
|
C1D
|
A:HEC603
|
3.1
|
133.4
|
1.0
|
|
C4A
|
A:HEC603
|
3.1
|
133.4
|
1.0
|
|
C1B
|
A:HEC603
|
3.1
|
133.4
|
1.0
|
|
CE1
|
A:HIS54
|
3.2
|
146.0
|
1.0
|
|
CE1
|
A:HIS120
|
3.3
|
134.6
|
1.0
|
|
CHA
|
A:HEC603
|
3.4
|
133.4
|
1.0
|
|
CHC
|
A:HEC603
|
3.4
|
133.4
|
1.0
|
|
CHD
|
A:HEC603
|
3.4
|
133.4
|
1.0
|
|
CHB
|
A:HEC603
|
3.5
|
133.4
|
1.0
|
|
CG
|
A:HIS54
|
3.7
|
146.0
|
1.0
|
|
CG
|
A:HIS120
|
3.8
|
134.6
|
1.0
|
|
ND1
|
A:HIS54
|
4.0
|
146.0
|
1.0
|
|
ND1
|
A:HIS120
|
4.1
|
134.6
|
1.0
|
|
C2A
|
A:HEC603
|
4.2
|
133.4
|
1.0
|
|
C2C
|
A:HEC603
|
4.3
|
133.4
|
1.0
|
|
C3C
|
A:HEC603
|
4.3
|
133.4
|
1.0
|
|
C3A
|
A:HEC603
|
4.3
|
133.4
|
1.0
|
|
C3B
|
A:HEC603
|
4.3
|
133.4
|
1.0
|
|
C3D
|
A:HEC603
|
4.3
|
133.4
|
1.0
|
|
C2D
|
A:HEC603
|
4.3
|
133.4
|
1.0
|
|
C2B
|
A:HEC603
|
4.3
|
133.4
|
1.0
|
|
CB
|
A:HIS54
|
4.9
|
146.0
|
1.0
|
|
Iron binding site 4 out
of 8 in 8d9m
Go back to
Iron Binding Sites List in 8d9m
Iron binding site 4 out
of 8 in the Cryo-Em of the Omcz Nanowires From Geobacter Sulfurreducens
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Cryo-Em of the Omcz Nanowires From Geobacter Sulfurreducens within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe604
b:130.3
occ:1.00
|
FE
|
A:HEC604
|
0.0
|
130.3
|
1.0
|
|
NC
|
A:HEC604
|
2.0
|
130.3
|
1.0
|
|
NB
|
A:HEC604
|
2.0
|
130.3
|
1.0
|
|
NA
|
A:HEC604
|
2.0
|
130.3
|
1.0
|
|
NE2
|
A:HIS121
|
2.0
|
131.1
|
1.0
|
|
ND
|
A:HEC604
|
2.1
|
130.3
|
1.0
|
|
NE2
|
A:HIS135
|
2.1
|
136.3
|
1.0
|
|
CD2
|
A:HIS135
|
2.4
|
136.3
|
1.0
|
|
CD2
|
A:HIS121
|
2.9
|
131.1
|
1.0
|
|
CE1
|
A:HIS121
|
3.0
|
131.1
|
1.0
|
|
C1C
|
A:HEC604
|
3.0
|
130.3
|
1.0
|
|
C4B
|
A:HEC604
|
3.0
|
130.3
|
1.0
|
|
C1B
|
A:HEC604
|
3.0
|
130.3
|
1.0
|
|
C4C
|
A:HEC604
|
3.0
|
130.3
|
1.0
|
|
C4A
|
A:HEC604
|
3.1
|
130.3
|
1.0
|
|
C1A
|
A:HEC604
|
3.1
|
130.3
|
1.0
|
|
C1D
|
A:HEC604
|
3.1
|
130.3
|
1.0
|
|
C4D
|
A:HEC604
|
3.1
|
130.3
|
1.0
|
|
CE1
|
A:HIS135
|
3.2
|
136.3
|
1.0
|
|
CHC
|
A:HEC604
|
3.4
|
130.3
|
1.0
|
|
CHD
|
A:HEC604
|
3.4
|
130.3
|
1.0
|
|
CHB
|
A:HEC604
|
3.4
|
130.3
|
1.0
|
|
CHA
|
A:HEC604
|
3.4
|
130.3
|
1.0
|
|
CG
|
A:HIS135
|
3.6
|
136.3
|
1.0
|
|
ND1
|
A:HIS135
|
3.9
|
136.3
|
1.0
|
|
CG
|
A:HIS121
|
4.0
|
131.1
|
1.0
|
|
ND1
|
A:HIS121
|
4.1
|
131.1
|
1.0
|
|
C2B
|
A:HEC604
|
4.3
|
130.3
|
1.0
|
|
C2A
|
A:HEC604
|
4.3
|
130.3
|
1.0
|
|
C2C
|
A:HEC604
|
4.3
|
130.3
|
1.0
|
|
C3B
|
A:HEC604
|
4.3
|
130.3
|
1.0
|
|
C3A
|
A:HEC604
|
4.3
|
130.3
|
1.0
|
|
C3C
|
A:HEC604
|
4.3
|
130.3
|
1.0
|
|
C2D
|
A:HEC604
|
4.3
|
130.3
|
1.0
|
|
C3D
|
A:HEC604
|
4.3
|
130.3
|
1.0
|
|
CB
|
A:HIS135
|
4.8
|
136.3
|
1.0
|
|
Iron binding site 5 out
of 8 in 8d9m
Go back to
Iron Binding Sites List in 8d9m
Iron binding site 5 out
of 8 in the Cryo-Em of the Omcz Nanowires From Geobacter Sulfurreducens
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of Cryo-Em of the Omcz Nanowires From Geobacter Sulfurreducens within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe605
b:130.7
occ:1.00
|
FE
|
A:HEC605
|
0.0
|
130.7
|
1.0
|
|
NA
|
A:HEC605
|
2.0
|
130.7
|
1.0
|
|
NE2
|
A:HIS206
|
2.0
|
135.1
|
1.0
|
|
NC
|
A:HEC605
|
2.0
|
130.7
|
1.0
|
|
NE2
|
A:HIS233
|
2.0
|
131.9
|
1.0
|
|
ND
|
A:HEC605
|
2.0
|
130.7
|
1.0
|
|
NB
|
A:HEC605
|
2.1
|
130.7
|
1.0
|
|
CE1
|
A:HIS206
|
2.2
|
135.1
|
1.0
|
|
CE1
|
A:HIS233
|
3.0
|
131.9
|
1.0
|
|
CD2
|
A:HIS233
|
3.0
|
131.9
|
1.0
|
|
C1A
|
A:HEC605
|
3.0
|
130.7
|
1.0
|
|
C4A
|
A:HEC605
|
3.0
|
130.7
|
1.0
|
|
C1D
|
A:HEC605
|
3.0
|
130.7
|
1.0
|
|
C4C
|
A:HEC605
|
3.1
|
130.7
|
1.0
|
|
C4D
|
A:HEC605
|
3.1
|
130.7
|
1.0
|
|
C1B
|
A:HEC605
|
3.1
|
130.7
|
1.0
|
|
C1C
|
A:HEC605
|
3.1
|
130.7
|
1.0
|
|
C4B
|
A:HEC605
|
3.1
|
130.7
|
1.0
|
|
CD2
|
A:HIS206
|
3.3
|
135.1
|
1.0
|
|
CHA
|
A:HEC605
|
3.4
|
130.7
|
1.0
|
|
CHD
|
A:HEC605
|
3.4
|
130.7
|
1.0
|
|
CHB
|
A:HEC605
|
3.4
|
130.7
|
1.0
|
|
ND1
|
A:HIS206
|
3.4
|
135.1
|
1.0
|
|
CHC
|
A:HEC605
|
3.5
|
130.7
|
1.0
|
|
CG
|
A:HIS206
|
4.0
|
135.1
|
1.0
|
|
ND1
|
A:HIS233
|
4.1
|
131.9
|
1.0
|
|
CG
|
A:HIS233
|
4.1
|
131.9
|
1.0
|
|
C2A
|
A:HEC605
|
4.3
|
130.7
|
1.0
|
|
C3A
|
A:HEC605
|
4.3
|
130.7
|
1.0
|
|
C3C
|
A:HEC605
|
4.3
|
130.7
|
1.0
|
|
C2D
|
A:HEC605
|
4.3
|
130.7
|
1.0
|
|
C2C
|
A:HEC605
|
4.3
|
130.7
|
1.0
|
|
C2B
|
A:HEC605
|
4.3
|
130.7
|
1.0
|
|
C3B
|
A:HEC605
|
4.3
|
130.7
|
1.0
|
|
C3D
|
A:HEC605
|
4.3
|
130.7
|
1.0
|
|
CMB
|
A:HEC607
|
4.6
|
124.4
|
1.0
|
|
Iron binding site 6 out
of 8 in 8d9m
Go back to
Iron Binding Sites List in 8d9m
Iron binding site 6 out
of 8 in the Cryo-Em of the Omcz Nanowires From Geobacter Sulfurreducens
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of Cryo-Em of the Omcz Nanowires From Geobacter Sulfurreducens within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe606
b:142.2
occ:1.00
|
FE
|
A:HEC606
|
0.0
|
142.2
|
1.0
|
|
CE1
|
A:HIS207
|
1.7
|
134.0
|
1.0
|
|
NA
|
A:HEC606
|
2.0
|
142.2
|
1.0
|
|
NE2
|
A:HIS218
|
2.0
|
147.0
|
1.0
|
|
NC
|
A:HEC606
|
2.0
|
142.2
|
1.0
|
|
NE2
|
A:HIS207
|
2.0
|
134.0
|
1.0
|
|
NB
|
A:HEC606
|
2.1
|
142.2
|
1.0
|
|
ND
|
A:HEC606
|
2.1
|
142.2
|
1.0
|
|
CD2
|
A:HIS218
|
2.8
|
147.0
|
1.0
|
|
ND1
|
A:HIS207
|
2.9
|
134.0
|
1.0
|
|
C1A
|
A:HEC606
|
3.0
|
142.2
|
1.0
|
|
C1C
|
A:HEC606
|
3.1
|
142.2
|
1.0
|
|
C4D
|
A:HEC606
|
3.1
|
142.2
|
1.0
|
|
C4C
|
A:HEC606
|
3.1
|
142.2
|
1.0
|
|
C4A
|
A:HEC606
|
3.1
|
142.2
|
1.0
|
|
C1D
|
A:HEC606
|
3.1
|
142.2
|
1.0
|
|
C4B
|
A:HEC606
|
3.1
|
142.2
|
1.0
|
|
C1B
|
A:HEC606
|
3.1
|
142.2
|
1.0
|
|
CE1
|
A:HIS218
|
3.1
|
147.0
|
1.0
|
|
CD2
|
A:HIS207
|
3.3
|
134.0
|
1.0
|
|
CHA
|
A:HEC606
|
3.4
|
142.2
|
1.0
|
|
CHC
|
A:HEC606
|
3.4
|
142.2
|
1.0
|
|
CHD
|
A:HEC606
|
3.4
|
142.2
|
1.0
|
|
CHB
|
A:HEC606
|
3.5
|
142.2
|
1.0
|
|
CG
|
A:HIS207
|
3.7
|
134.0
|
1.0
|
|
CG
|
A:HIS218
|
4.0
|
147.0
|
1.0
|
|
ND1
|
A:HIS218
|
4.1
|
147.0
|
1.0
|
|
C2A
|
A:HEC606
|
4.3
|
142.2
|
1.0
|
|
C3A
|
A:HEC606
|
4.3
|
142.2
|
1.0
|
|
C2C
|
A:HEC606
|
4.3
|
142.2
|
1.0
|
|
C3C
|
A:HEC606
|
4.3
|
142.2
|
1.0
|
|
C3D
|
A:HEC606
|
4.3
|
142.2
|
1.0
|
|
C2B
|
A:HEC606
|
4.3
|
142.2
|
1.0
|
|
C3B
|
A:HEC606
|
4.3
|
142.2
|
1.0
|
|
C2D
|
A:HEC606
|
4.3
|
142.2
|
1.0
|
|
NE2
|
A:GLN203
|
4.9
|
133.9
|
1.0
|
|
Iron binding site 7 out
of 8 in 8d9m
Go back to
Iron Binding Sites List in 8d9m
Iron binding site 7 out
of 8 in the Cryo-Em of the Omcz Nanowires From Geobacter Sulfurreducens
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 7 of Cryo-Em of the Omcz Nanowires From Geobacter Sulfurreducens within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe607
b:124.4
occ:1.00
|
FE
|
A:HEC607
|
0.0
|
124.4
|
1.0
|
|
NC
|
A:HEC607
|
2.0
|
124.4
|
1.0
|
|
NE2
|
A:HIS265
|
2.0
|
125.9
|
1.0
|
|
NA
|
A:HEC607
|
2.0
|
124.4
|
1.0
|
|
NE2
|
A:HIS182
|
2.0
|
131.5
|
1.0
|
|
NB
|
A:HEC607
|
2.1
|
124.4
|
1.0
|
|
ND
|
A:HEC607
|
2.1
|
124.4
|
1.0
|
|
CE1
|
A:HIS265
|
2.6
|
125.9
|
1.0
|
|
CD2
|
A:HIS182
|
2.9
|
131.5
|
1.0
|
|
C4C
|
A:HEC607
|
3.0
|
124.4
|
1.0
|
|
C1A
|
A:HEC607
|
3.0
|
124.4
|
1.0
|
|
C1C
|
A:HEC607
|
3.0
|
124.4
|
1.0
|
|
C4A
|
A:HEC607
|
3.1
|
124.4
|
1.0
|
|
C1B
|
A:HEC607
|
3.1
|
124.4
|
1.0
|
|
C1D
|
A:HEC607
|
3.1
|
124.4
|
1.0
|
|
C4B
|
A:HEC607
|
3.1
|
124.4
|
1.0
|
|
C4D
|
A:HEC607
|
3.1
|
124.4
|
1.0
|
|
CE1
|
A:HIS182
|
3.1
|
131.5
|
1.0
|
|
CD2
|
A:HIS265
|
3.3
|
125.9
|
1.0
|
|
CHA
|
A:HEC607
|
3.4
|
124.4
|
1.0
|
|
CHD
|
A:HEC607
|
3.4
|
124.4
|
1.0
|
|
CHB
|
A:HEC607
|
3.4
|
124.4
|
1.0
|
|
CHC
|
A:HEC607
|
3.4
|
124.4
|
1.0
|
|
ND1
|
A:HIS265
|
3.9
|
125.9
|
1.0
|
|
CG
|
A:HIS182
|
4.0
|
131.5
|
1.0
|
|
ND1
|
A:HIS182
|
4.1
|
131.5
|
1.0
|
|
CG
|
A:HIS265
|
4.2
|
125.9
|
1.0
|
|
C3C
|
A:HEC607
|
4.3
|
124.4
|
1.0
|
|
C2A
|
A:HEC607
|
4.3
|
124.4
|
1.0
|
|
C2C
|
A:HEC607
|
4.3
|
124.4
|
1.0
|
|
C3A
|
A:HEC607
|
4.3
|
124.4
|
1.0
|
|
C2B
|
A:HEC607
|
4.3
|
124.4
|
1.0
|
|
C3B
|
A:HEC607
|
4.3
|
124.4
|
1.0
|
|
C2D
|
A:HEC607
|
4.3
|
124.4
|
1.0
|
|
C3D
|
A:HEC607
|
4.3
|
124.4
|
1.0
|
|
CAA
|
A:HEC605
|
4.8
|
130.7
|
1.0
|
|
CD1
|
A:ILE241
|
5.0
|
116.7
|
1.0
|
|
Iron binding site 8 out
of 8 in 8d9m
Go back to
Iron Binding Sites List in 8d9m
Iron binding site 8 out
of 8 in the Cryo-Em of the Omcz Nanowires From Geobacter Sulfurreducens
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 8 of Cryo-Em of the Omcz Nanowires From Geobacter Sulfurreducens within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe608
b:124.1
occ:1.00
|
FE
|
A:HEC608
|
0.0
|
124.1
|
1.0
|
|
NC
|
A:HEC608
|
2.0
|
124.1
|
1.0
|
|
NE2
|
A:HIS276
|
2.0
|
130.8
|
1.0
|
|
NB
|
A:HEC608
|
2.0
|
124.1
|
1.0
|
|
NA
|
A:HEC608
|
2.0
|
124.1
|
1.0
|
|
NE2
|
A:HIS239
|
2.0
|
123.3
|
1.0
|
|
ND
|
A:HEC608
|
2.1
|
124.1
|
1.0
|
|
CD2
|
A:HIS276
|
2.4
|
130.8
|
1.0
|
|
CE1
|
A:HIS239
|
2.7
|
123.3
|
1.0
|
|
C4C
|
A:HEC608
|
3.0
|
124.1
|
1.0
|
|
C1C
|
A:HEC608
|
3.0
|
124.1
|
1.0
|
|
C4B
|
A:HEC608
|
3.0
|
124.1
|
1.0
|
|
C1D
|
A:HEC608
|
3.0
|
124.1
|
1.0
|
|
C1B
|
A:HEC608
|
3.0
|
124.1
|
1.0
|
|
C4A
|
A:HEC608
|
3.1
|
124.1
|
1.0
|
|
C4D
|
A:HEC608
|
3.1
|
124.1
|
1.0
|
|
C1A
|
A:HEC608
|
3.1
|
124.1
|
1.0
|
|
CE1
|
A:HIS276
|
3.2
|
130.8
|
1.0
|
|
CD2
|
A:HIS239
|
3.3
|
123.3
|
1.0
|
|
CHD
|
A:HEC608
|
3.4
|
124.1
|
1.0
|
|
CHC
|
A:HEC608
|
3.4
|
124.1
|
1.0
|
|
CHB
|
A:HEC608
|
3.4
|
124.1
|
1.0
|
|
CHA
|
A:HEC608
|
3.4
|
124.1
|
1.0
|
|
CG
|
A:HIS276
|
3.7
|
130.8
|
1.0
|
|
ND1
|
A:HIS239
|
3.9
|
123.3
|
1.0
|
|
ND1
|
A:HIS276
|
4.0
|
130.8
|
1.0
|
|
CG
|
A:HIS239
|
4.2
|
123.3
|
1.0
|
|
C3C
|
A:HEC608
|
4.2
|
124.1
|
1.0
|
|
C2C
|
A:HEC608
|
4.2
|
124.1
|
1.0
|
|
C3B
|
A:HEC608
|
4.3
|
124.1
|
1.0
|
|
C2B
|
A:HEC608
|
4.3
|
124.1
|
1.0
|
|
C3A
|
A:HEC608
|
4.3
|
124.1
|
1.0
|
|
C2D
|
A:HEC608
|
4.3
|
124.1
|
1.0
|
|
C2A
|
A:HEC608
|
4.3
|
124.1
|
1.0
|
|
C3D
|
A:HEC608
|
4.3
|
124.1
|
1.0
|
|
CB
|
A:HIS276
|
4.9
|
130.8
|
1.0
|
|
Reference:
F.Wang,
C.H.Chan,
V.Suciu,
K.Mustafa,
M.Ammend,
D.Si,
A.I.Hochbaum,
E.H.Egelman,
D.R.Bond.
Structure of Geobacter Omcz Filaments Suggests Extracellular Cytochrome Polymers Evolved Independently Multiple Times. Elife V. 11 2022.
ISSN: ESSN 2050-084X
PubMed: 36062910
DOI: 10.7554/ELIFE.81551
Page generated: Wed Apr 5 08:27:24 2023
|
