Iron in PDB 8dbx: Cryoem Structure of Partially Oxidized Mofe-Protein on Ultrathin Carbon
Enzymatic activity of Cryoem Structure of Partially Oxidized Mofe-Protein on Ultrathin Carbon
All present enzymatic activity of Cryoem Structure of Partially Oxidized Mofe-Protein on Ultrathin Carbon:
1.18.6.1;
Other elements in 8dbx:
The structure of Cryoem Structure of Partially Oxidized Mofe-Protein on Ultrathin Carbon also contains other interesting chemical elements:
Iron Binding Sites:
Iron binding site 1 out
of 48 in 8dbx
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Iron Binding Sites List in 8dbx
Iron binding site 1 out
of 48 in the Cryoem Structure of Partially Oxidized Mofe-Protein on Ultrathin Carbon
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Cryoem Structure of Partially Oxidized Mofe-Protein on Ultrathin Carbon within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe600
b:39.3
occ:1.00
|
FE1
|
A:ICS600
|
0.0
|
39.3
|
1.0
|
SG
|
A:CYS275
|
2.1
|
26.6
|
1.0
|
S2A
|
A:ICS600
|
2.3
|
25.8
|
1.0
|
S4A
|
A:ICS600
|
2.3
|
25.3
|
1.0
|
S1A
|
A:ICS600
|
2.3
|
26.5
|
1.0
|
FE4
|
A:ICS600
|
2.7
|
34.3
|
1.0
|
FE2
|
A:ICS600
|
2.7
|
30.2
|
1.0
|
FE3
|
A:ICS600
|
2.7
|
31.2
|
1.0
|
CB
|
A:CYS275
|
3.3
|
20.0
|
1.0
|
CX
|
A:ICS600
|
3.5
|
23.6
|
1.0
|
OG
|
A:SER278
|
3.7
|
24.1
|
1.0
|
CB
|
A:SER278
|
4.0
|
19.9
|
1.0
|
CB
|
A:LEU358
|
4.3
|
28.6
|
1.0
|
CE1
|
A:TYR229
|
4.4
|
16.6
|
1.0
|
CA
|
A:CYS275
|
4.6
|
22.2
|
1.0
|
N
|
A:SER278
|
4.6
|
26.3
|
1.0
|
CE1
|
A:HIS195
|
4.6
|
20.9
|
1.0
|
S2B
|
A:ICS600
|
4.8
|
22.4
|
1.0
|
N
|
A:LEU358
|
4.8
|
22.3
|
1.0
|
S5A
|
A:ICS600
|
4.8
|
20.5
|
1.0
|
S3A
|
A:ICS600
|
4.8
|
29.0
|
1.0
|
NE2
|
A:HIS195
|
4.9
|
20.6
|
1.0
|
CB
|
A:ARG277
|
5.0
|
17.7
|
1.0
|
CA
|
A:SER278
|
5.0
|
23.0
|
1.0
|
CD2
|
A:LEU358
|
5.0
|
28.4
|
1.0
|
FE6
|
A:ICS600
|
5.0
|
29.9
|
1.0
|
|
Iron binding site 2 out
of 48 in 8dbx
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Iron Binding Sites List in 8dbx
Iron binding site 2 out
of 48 in the Cryoem Structure of Partially Oxidized Mofe-Protein on Ultrathin Carbon
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Cryoem Structure of Partially Oxidized Mofe-Protein on Ultrathin Carbon within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe600
b:30.2
occ:1.00
|
FE2
|
A:ICS600
|
0.0
|
30.2
|
1.0
|
CX
|
A:ICS600
|
2.0
|
23.6
|
1.0
|
S2B
|
A:ICS600
|
2.2
|
22.4
|
1.0
|
S2A
|
A:ICS600
|
2.2
|
25.8
|
1.0
|
S1A
|
A:ICS600
|
2.3
|
26.5
|
1.0
|
FE6
|
A:ICS600
|
2.6
|
29.9
|
1.0
|
FE4
|
A:ICS600
|
2.7
|
34.3
|
1.0
|
FE1
|
A:ICS600
|
2.7
|
39.3
|
1.0
|
FE3
|
A:ICS600
|
2.7
|
31.2
|
1.0
|
CE1
|
A:HIS195
|
3.5
|
20.9
|
1.0
|
NE2
|
A:HIS195
|
3.5
|
20.6
|
1.0
|
FE5
|
A:ICS600
|
3.7
|
39.5
|
1.0
|
FE7
|
A:ICS600
|
3.7
|
30.4
|
1.0
|
S4A
|
A:ICS600
|
3.9
|
25.3
|
1.0
|
CZ
|
A:PHE381
|
3.9
|
18.4
|
1.0
|
S1B
|
A:ICS600
|
4.2
|
20.2
|
1.0
|
S3B
|
A:ICS600
|
4.2
|
17.1
|
1.0
|
CE1
|
A:PHE381
|
4.3
|
19.2
|
1.0
|
CG1
|
A:VAL70
|
4.5
|
20.0
|
1.0
|
S3A
|
A:ICS600
|
4.5
|
29.0
|
1.0
|
S5A
|
A:ICS600
|
4.5
|
20.5
|
1.0
|
SG
|
A:CYS275
|
4.7
|
26.6
|
1.0
|
ND1
|
A:HIS195
|
4.7
|
20.5
|
1.0
|
CD2
|
A:HIS195
|
4.7
|
22.1
|
1.0
|
CG2
|
A:VAL70
|
4.8
|
17.3
|
1.0
|
N
|
A:GLY357
|
4.9
|
28.4
|
1.0
|
CB
|
A:SER278
|
4.9
|
19.9
|
1.0
|
|
Iron binding site 3 out
of 48 in 8dbx
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Iron Binding Sites List in 8dbx
Iron binding site 3 out
of 48 in the Cryoem Structure of Partially Oxidized Mofe-Protein on Ultrathin Carbon
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Cryoem Structure of Partially Oxidized Mofe-Protein on Ultrathin Carbon within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe600
b:31.2
occ:1.00
|
FE3
|
A:ICS600
|
0.0
|
31.2
|
1.0
|
CX
|
A:ICS600
|
2.0
|
23.6
|
1.0
|
S5A
|
A:ICS600
|
2.2
|
20.5
|
1.0
|
S4A
|
A:ICS600
|
2.2
|
25.3
|
1.0
|
S2A
|
A:ICS600
|
2.3
|
25.8
|
1.0
|
FE7
|
A:ICS600
|
2.6
|
30.4
|
1.0
|
FE4
|
A:ICS600
|
2.6
|
34.3
|
1.0
|
FE2
|
A:ICS600
|
2.7
|
30.2
|
1.0
|
FE1
|
A:ICS600
|
2.7
|
39.3
|
1.0
|
FE6
|
A:ICS600
|
3.7
|
29.9
|
1.0
|
O
|
A:HOH824
|
3.7
|
32.5
|
1.0
|
NH2
|
A:ARG96
|
3.7
|
25.0
|
1.0
|
FE5
|
A:ICS600
|
3.7
|
39.5
|
1.0
|
S1A
|
A:ICS600
|
3.9
|
26.5
|
1.0
|
CD1
|
A:TYR229
|
4.1
|
17.2
|
1.0
|
S3B
|
A:ICS600
|
4.2
|
17.1
|
1.0
|
S4B
|
A:ICS600
|
4.3
|
18.0
|
1.0
|
CE1
|
A:TYR229
|
4.3
|
16.6
|
1.0
|
S2B
|
A:ICS600
|
4.5
|
22.4
|
1.0
|
S3A
|
A:ICS600
|
4.5
|
29.0
|
1.0
|
SG
|
A:CYS275
|
4.6
|
26.6
|
1.0
|
CZ
|
A:ARG96
|
4.9
|
20.9
|
1.0
|
NH2
|
A:ARG359
|
4.9
|
22.6
|
1.0
|
|
Iron binding site 4 out
of 48 in 8dbx
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Iron Binding Sites List in 8dbx
Iron binding site 4 out
of 48 in the Cryoem Structure of Partially Oxidized Mofe-Protein on Ultrathin Carbon
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Cryoem Structure of Partially Oxidized Mofe-Protein on Ultrathin Carbon within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe600
b:34.3
occ:1.00
|
FE4
|
A:ICS600
|
0.0
|
34.3
|
1.0
|
CX
|
A:ICS600
|
2.0
|
23.6
|
1.0
|
S3A
|
A:ICS600
|
2.2
|
29.0
|
1.0
|
S1A
|
A:ICS600
|
2.3
|
26.5
|
1.0
|
S4A
|
A:ICS600
|
2.3
|
25.3
|
1.0
|
FE5
|
A:ICS600
|
2.6
|
39.5
|
1.0
|
FE3
|
A:ICS600
|
2.6
|
31.2
|
1.0
|
FE2
|
A:ICS600
|
2.7
|
30.2
|
1.0
|
FE1
|
A:ICS600
|
2.7
|
39.3
|
1.0
|
FE7
|
A:ICS600
|
3.7
|
30.4
|
1.0
|
FE6
|
A:ICS600
|
3.7
|
29.9
|
1.0
|
N
|
A:GLY357
|
3.8
|
28.4
|
1.0
|
S2A
|
A:ICS600
|
3.8
|
25.8
|
1.0
|
N
|
A:LEU358
|
3.8
|
22.3
|
1.0
|
CB
|
A:LEU358
|
4.2
|
28.6
|
1.0
|
S1B
|
A:ICS600
|
4.3
|
20.2
|
1.0
|
S4B
|
A:ICS600
|
4.3
|
18.0
|
1.0
|
SG
|
A:CYS275
|
4.5
|
26.6
|
1.0
|
S5A
|
A:ICS600
|
4.5
|
20.5
|
1.0
|
S2B
|
A:ICS600
|
4.5
|
22.4
|
1.0
|
CA
|
A:GLY357
|
4.5
|
25.1
|
1.0
|
CA
|
A:LEU358
|
4.6
|
26.7
|
1.0
|
N
|
A:ARG359
|
4.6
|
21.9
|
1.0
|
C
|
A:GLY357
|
4.6
|
28.6
|
1.0
|
C
|
A:GLY356
|
4.6
|
24.8
|
1.0
|
CZ
|
A:PHE381
|
4.7
|
18.4
|
1.0
|
CA
|
A:GLY356
|
4.7
|
17.6
|
1.0
|
CG
|
A:ARG359
|
4.8
|
22.6
|
1.0
|
|
Iron binding site 5 out
of 48 in 8dbx
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Iron Binding Sites List in 8dbx
Iron binding site 5 out
of 48 in the Cryoem Structure of Partially Oxidized Mofe-Protein on Ultrathin Carbon
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of Cryoem Structure of Partially Oxidized Mofe-Protein on Ultrathin Carbon within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe600
b:39.5
occ:1.00
|
FE5
|
A:ICS600
|
0.0
|
39.5
|
1.0
|
CX
|
A:ICS600
|
2.0
|
23.6
|
1.0
|
S4B
|
A:ICS600
|
2.3
|
18.0
|
1.0
|
S3A
|
A:ICS600
|
2.3
|
29.0
|
1.0
|
S1B
|
A:ICS600
|
2.3
|
20.2
|
1.0
|
FE4
|
A:ICS600
|
2.6
|
34.3
|
1.0
|
FE7
|
A:ICS600
|
2.6
|
30.4
|
1.0
|
FE6
|
A:ICS600
|
2.6
|
29.9
|
1.0
|
MO1
|
A:ICS600
|
2.8
|
37.8
|
1.0
|
FE2
|
A:ICS600
|
3.7
|
30.2
|
1.0
|
FE3
|
A:ICS600
|
3.7
|
31.2
|
1.0
|
S3B
|
A:ICS600
|
3.9
|
17.1
|
1.0
|
ND1
|
A:HIS442
|
3.9
|
19.9
|
1.0
|
N
|
A:GLY356
|
3.9
|
26.8
|
1.0
|
CA
|
A:GLY356
|
4.0
|
17.6
|
1.0
|
CE1
|
A:HIS442
|
4.1
|
17.9
|
1.0
|
CG2
|
A:ILE355
|
4.2
|
27.8
|
1.0
|
S1A
|
A:ICS600
|
4.3
|
26.5
|
1.0
|
S4A
|
A:ICS600
|
4.3
|
25.3
|
1.0
|
S5A
|
A:ICS600
|
4.5
|
20.5
|
1.0
|
S2B
|
A:ICS600
|
4.5
|
22.4
|
1.0
|
O7
|
A:HCA601
|
4.6
|
28.0
|
1.0
|
N
|
A:GLY357
|
4.6
|
28.4
|
1.0
|
CZ
|
A:PHE381
|
4.7
|
18.4
|
1.0
|
O6
|
A:HCA601
|
4.8
|
24.8
|
1.0
|
C
|
A:GLY356
|
4.8
|
24.8
|
1.0
|
CG
|
A:HIS442
|
4.8
|
15.1
|
1.0
|
CD
|
A:ARG359
|
4.9
|
19.1
|
1.0
|
NE
|
A:ARG359
|
4.9
|
36.2
|
1.0
|
|
Iron binding site 6 out
of 48 in 8dbx
Go back to
Iron Binding Sites List in 8dbx
Iron binding site 6 out
of 48 in the Cryoem Structure of Partially Oxidized Mofe-Protein on Ultrathin Carbon
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of Cryoem Structure of Partially Oxidized Mofe-Protein on Ultrathin Carbon within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe600
b:29.9
occ:1.00
|
FE6
|
A:ICS600
|
0.0
|
29.9
|
1.0
|
CX
|
A:ICS600
|
2.0
|
23.6
|
1.0
|
S2B
|
A:ICS600
|
2.2
|
22.4
|
1.0
|
S3B
|
A:ICS600
|
2.2
|
17.1
|
1.0
|
S1B
|
A:ICS600
|
2.2
|
20.2
|
1.0
|
FE2
|
A:ICS600
|
2.6
|
30.2
|
1.0
|
FE7
|
A:ICS600
|
2.6
|
30.4
|
1.0
|
FE5
|
A:ICS600
|
2.6
|
39.5
|
1.0
|
MO1
|
A:ICS600
|
2.7
|
37.8
|
1.0
|
O7
|
A:HCA601
|
3.5
|
28.0
|
1.0
|
FE3
|
A:ICS600
|
3.7
|
31.2
|
1.0
|
FE4
|
A:ICS600
|
3.7
|
34.3
|
1.0
|
S4B
|
A:ICS600
|
3.8
|
18.0
|
1.0
|
CZ
|
A:PHE381
|
4.0
|
18.4
|
1.0
|
S2A
|
A:ICS600
|
4.2
|
25.8
|
1.0
|
S1A
|
A:ICS600
|
4.3
|
26.5
|
1.0
|
CG2
|
A:VAL70
|
4.3
|
17.3
|
1.0
|
S5A
|
A:ICS600
|
4.5
|
20.5
|
1.0
|
O2
|
A:HCA601
|
4.5
|
37.8
|
1.0
|
O6
|
A:HCA601
|
4.5
|
24.8
|
1.0
|
S3A
|
A:ICS600
|
4.5
|
29.0
|
1.0
|
CE2
|
A:PHE381
|
4.5
|
14.4
|
1.0
|
C3
|
A:HCA601
|
4.7
|
25.6
|
1.0
|
ND1
|
A:HIS442
|
4.7
|
19.9
|
1.0
|
C7
|
A:HCA601
|
4.9
|
27.8
|
1.0
|
CE1
|
A:HIS442
|
4.9
|
17.9
|
1.0
|
NE2
|
A:HIS195
|
4.9
|
20.6
|
1.0
|
FE1
|
A:ICS600
|
5.0
|
39.3
|
1.0
|
C1
|
A:HCA601
|
5.0
|
29.3
|
1.0
|
|
Iron binding site 7 out
of 48 in 8dbx
Go back to
Iron Binding Sites List in 8dbx
Iron binding site 7 out
of 48 in the Cryoem Structure of Partially Oxidized Mofe-Protein on Ultrathin Carbon
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 7 of Cryoem Structure of Partially Oxidized Mofe-Protein on Ultrathin Carbon within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe600
b:30.4
occ:1.00
|
FE7
|
A:ICS600
|
0.0
|
30.4
|
1.0
|
CX
|
A:ICS600
|
2.0
|
23.6
|
1.0
|
S5A
|
A:ICS600
|
2.2
|
20.5
|
1.0
|
S4B
|
A:ICS600
|
2.2
|
18.0
|
1.0
|
S3B
|
A:ICS600
|
2.3
|
17.1
|
1.0
|
FE3
|
A:ICS600
|
2.6
|
31.2
|
1.0
|
FE6
|
A:ICS600
|
2.6
|
29.9
|
1.0
|
FE5
|
A:ICS600
|
2.6
|
39.5
|
1.0
|
MO1
|
A:ICS600
|
2.7
|
37.8
|
1.0
|
O
|
A:HOH759
|
3.7
|
15.3
|
1.0
|
FE4
|
A:ICS600
|
3.7
|
34.3
|
1.0
|
FE2
|
A:ICS600
|
3.7
|
30.2
|
1.0
|
S1B
|
A:ICS600
|
3.8
|
20.2
|
1.0
|
NH2
|
A:ARG96
|
3.8
|
25.0
|
1.0
|
O6
|
A:HCA601
|
3.9
|
24.8
|
1.0
|
NE
|
A:ARG96
|
4.0
|
23.3
|
1.0
|
S2A
|
A:ICS600
|
4.3
|
25.8
|
1.0
|
S4A
|
A:ICS600
|
4.3
|
25.3
|
1.0
|
CZ
|
A:ARG96
|
4.4
|
20.9
|
1.0
|
S2B
|
A:ICS600
|
4.4
|
22.4
|
1.0
|
S3A
|
A:ICS600
|
4.5
|
29.0
|
1.0
|
NH2
|
A:ARG359
|
4.5
|
22.6
|
1.0
|
O7
|
A:HCA601
|
4.5
|
28.0
|
1.0
|
CZ
|
A:ARG359
|
4.6
|
28.3
|
1.0
|
C7
|
A:HCA601
|
4.7
|
27.8
|
1.0
|
ND1
|
A:HIS442
|
4.8
|
19.9
|
1.0
|
NE
|
A:ARG359
|
4.9
|
36.2
|
1.0
|
NH1
|
A:ARG359
|
4.9
|
13.6
|
1.0
|
O
|
A:HOH824
|
4.9
|
32.5
|
1.0
|
|
Iron binding site 8 out
of 48 in 8dbx
Go back to
Iron Binding Sites List in 8dbx
Iron binding site 8 out
of 48 in the Cryoem Structure of Partially Oxidized Mofe-Protein on Ultrathin Carbon
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 8 of Cryoem Structure of Partially Oxidized Mofe-Protein on Ultrathin Carbon within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe600
b:34.3
occ:0.50
|
FE1
|
B:CLF600
|
0.0
|
34.3
|
0.5
|
FE1
|
B:1CL601
|
0.1
|
37.2
|
0.5
|
S3A
|
B:1CL601
|
2.3
|
19.3
|
0.5
|
SG
|
A:CYS154
|
2.3
|
28.4
|
1.0
|
S2A
|
B:CLF600
|
2.3
|
16.5
|
0.5
|
S3A
|
B:CLF600
|
2.3
|
19.2
|
0.5
|
S1
|
B:1CL601
|
2.3
|
21.0
|
0.5
|
S1
|
B:CLF600
|
2.4
|
20.8
|
0.5
|
S2A
|
B:1CL601
|
2.4
|
16.4
|
0.5
|
FE2
|
B:CLF600
|
2.5
|
42.4
|
0.5
|
FE2
|
B:1CL601
|
2.6
|
40.8
|
0.5
|
FE4
|
B:1CL601
|
2.6
|
40.2
|
0.5
|
FE4
|
B:CLF600
|
2.6
|
38.5
|
0.5
|
FE3
|
B:CLF600
|
2.8
|
28.2
|
0.5
|
FE3
|
B:1CL601
|
2.9
|
27.5
|
0.5
|
CB
|
A:CYS154
|
3.6
|
18.5
|
1.0
|
O
|
B:HOH816
|
3.7
|
27.4
|
1.0
|
OG
|
B:SER92
|
3.7
|
35.4
|
1.0
|
S4A
|
B:CLF600
|
3.8
|
16.6
|
0.5
|
S4A
|
B:1CL601
|
3.9
|
16.0
|
0.5
|
SG
|
B:CYS95
|
3.9
|
31.7
|
1.0
|
CA
|
A:GLY185
|
3.9
|
19.2
|
1.0
|
N
|
A:CYS154
|
4.0
|
25.9
|
1.0
|
N
|
A:GLY185
|
4.1
|
22.7
|
1.0
|
FE8
|
B:CLF600
|
4.4
|
36.3
|
0.5
|
CA
|
A:CYS154
|
4.4
|
19.4
|
1.0
|
FE8
|
B:1CL601
|
4.4
|
38.3
|
0.5
|
FE5
|
B:CLF600
|
4.6
|
35.8
|
0.5
|
SG
|
A:CYS88
|
4.7
|
23.5
|
1.0
|
CB
|
B:SER92
|
4.7
|
27.4
|
1.0
|
C
|
A:GLY185
|
4.7
|
20.2
|
1.0
|
SG
|
B:CYS153
|
4.8
|
31.2
|
1.0
|
FE6
|
B:CLF600
|
4.9
|
26.7
|
0.5
|
SG
|
A:CYS62
|
4.9
|
21.7
|
1.0
|
|
Iron binding site 9 out
of 48 in 8dbx
Go back to
Iron Binding Sites List in 8dbx
Iron binding site 9 out
of 48 in the Cryoem Structure of Partially Oxidized Mofe-Protein on Ultrathin Carbon
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 9 of Cryoem Structure of Partially Oxidized Mofe-Protein on Ultrathin Carbon within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe600
b:42.4
occ:0.50
|
FE2
|
B:CLF600
|
0.0
|
42.4
|
0.5
|
FE2
|
B:1CL601
|
0.2
|
40.8
|
0.5
|
SG
|
B:CYS95
|
2.1
|
31.7
|
1.0
|
S4A
|
B:CLF600
|
2.3
|
16.6
|
0.5
|
S2A
|
B:CLF600
|
2.3
|
16.5
|
0.5
|
S4A
|
B:1CL601
|
2.3
|
16.0
|
0.5
|
S1
|
B:1CL601
|
2.3
|
21.0
|
0.5
|
S2A
|
B:1CL601
|
2.4
|
16.4
|
0.5
|
FE4
|
B:1CL601
|
2.5
|
40.2
|
0.5
|
FE1
|
B:1CL601
|
2.5
|
37.2
|
0.5
|
S1
|
B:CLF600
|
2.5
|
20.8
|
0.5
|
FE1
|
B:CLF600
|
2.5
|
34.3
|
0.5
|
FE4
|
B:CLF600
|
2.5
|
38.5
|
0.5
|
FE3
|
B:CLF600
|
2.8
|
28.2
|
0.5
|
FE3
|
B:1CL601
|
2.8
|
27.5
|
0.5
|
FE8
|
B:1CL601
|
2.9
|
38.3
|
0.5
|
FE8
|
B:CLF600
|
3.0
|
36.3
|
0.5
|
N
|
B:CYS95
|
3.1
|
24.0
|
1.0
|
CB
|
B:CYS95
|
3.2
|
9.7
|
1.0
|
CA
|
B:CYS95
|
3.3
|
28.4
|
1.0
|
S3A
|
B:1CL601
|
3.7
|
19.3
|
0.5
|
S3A
|
B:CLF600
|
3.8
|
19.2
|
0.5
|
C
|
B:GLY94
|
3.8
|
23.6
|
1.0
|
FE5
|
B:CLF600
|
3.8
|
35.8
|
0.5
|
S4B
|
B:1CL601
|
3.9
|
27.6
|
0.5
|
S4B
|
B:CLF600
|
3.9
|
26.1
|
0.5
|
OG
|
B:SER92
|
4.0
|
35.4
|
1.0
|
O
|
B:HOH816
|
4.4
|
27.4
|
1.0
|
FE5
|
B:1CL601
|
4.4
|
37.5
|
0.5
|
CA
|
B:GLY94
|
4.4
|
11.9
|
1.0
|
O
|
B:GLY94
|
4.5
|
22.9
|
1.0
|
SG
|
A:CYS154
|
4.6
|
28.4
|
1.0
|
SG
|
A:CYS88
|
4.6
|
23.5
|
1.0
|
FE6
|
B:CLF600
|
4.6
|
26.7
|
0.5
|
C
|
B:CYS95
|
4.8
|
18.1
|
1.0
|
N
|
B:GLY94
|
4.8
|
21.8
|
1.0
|
SG
|
A:CYS62
|
4.9
|
21.7
|
1.0
|
O
|
B:SER92
|
4.9
|
34.7
|
1.0
|
CB
|
B:SER92
|
5.0
|
27.4
|
1.0
|
|
Iron binding site 10 out
of 48 in 8dbx
Go back to
Iron Binding Sites List in 8dbx
Iron binding site 10 out
of 48 in the Cryoem Structure of Partially Oxidized Mofe-Protein on Ultrathin Carbon
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 10 of Cryoem Structure of Partially Oxidized Mofe-Protein on Ultrathin Carbon within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe600
b:28.2
occ:0.50
|
FE3
|
B:CLF600
|
0.0
|
28.2
|
0.5
|
FE3
|
B:1CL601
|
0.1
|
27.5
|
0.5
|
S4A
|
B:1CL601
|
2.2
|
16.0
|
0.5
|
S4A
|
B:CLF600
|
2.3
|
16.6
|
0.5
|
S3A
|
B:1CL601
|
2.3
|
19.3
|
0.5
|
S2A
|
B:CLF600
|
2.3
|
16.5
|
0.5
|
S2A
|
B:1CL601
|
2.3
|
16.4
|
0.5
|
SG
|
A:CYS62
|
2.3
|
21.7
|
1.0
|
S3A
|
B:CLF600
|
2.3
|
19.2
|
0.5
|
FE4
|
B:1CL601
|
2.7
|
40.2
|
0.5
|
FE2
|
B:1CL601
|
2.7
|
40.8
|
0.5
|
FE4
|
B:CLF600
|
2.7
|
38.5
|
0.5
|
FE1
|
B:1CL601
|
2.8
|
37.2
|
0.5
|
FE2
|
B:CLF600
|
2.8
|
42.4
|
0.5
|
FE1
|
B:CLF600
|
2.8
|
34.3
|
0.5
|
CB
|
A:CYS62
|
3.2
|
19.9
|
1.0
|
CA
|
A:GLY185
|
3.8
|
19.2
|
1.0
|
CB
|
A:TYR64
|
4.1
|
11.9
|
1.0
|
S1
|
B:1CL601
|
4.2
|
21.0
|
0.5
|
CA
|
B:GLY94
|
4.2
|
11.9
|
1.0
|
S1
|
B:CLF600
|
4.3
|
20.8
|
0.5
|
C
|
B:GLY94
|
4.3
|
23.6
|
1.0
|
N
|
B:CYS95
|
4.4
|
24.0
|
1.0
|
N
|
A:GLY185
|
4.5
|
22.7
|
1.0
|
CD1
|
A:TYR64
|
4.6
|
18.4
|
1.0
|
CA
|
A:CYS62
|
4.6
|
21.6
|
1.0
|
CG
|
A:TYR64
|
4.7
|
17.2
|
1.0
|
SG
|
A:CYS154
|
4.7
|
28.4
|
1.0
|
SG
|
B:CYS95
|
4.8
|
31.7
|
1.0
|
O
|
B:GLY94
|
4.9
|
22.9
|
1.0
|
C
|
A:GLY185
|
4.9
|
20.2
|
1.0
|
N
|
B:GLY94
|
4.9
|
21.8
|
1.0
|
N
|
A:TYR64
|
5.0
|
25.2
|
1.0
|
SG
|
A:CYS88
|
5.0
|
23.5
|
1.0
|
|
Reference:
R.A.Warmack,
A.O.Maggiolo,
A.Orta,
B.B.Wenke,
J.B.Howard,
D.C.Rees.
Structural Consequences of Turnover-Induced Homocitrate Loss in Nitrogenase. Nat Commun V. 14 1091 2023.
ISSN: ESSN 2041-1723
PubMed: 36841829
DOI: 10.1038/S41467-023-36636-4
Page generated: Fri Aug 9 23:29:31 2024
|