Iron in PDB 8dfd: Cryoem Structure of the 2:1 Adp-Tetrafluoroaluminate Stabilized Nitrogenase Complex From Azotobacter Vinelandii
Enzymatic activity of Cryoem Structure of the 2:1 Adp-Tetrafluoroaluminate Stabilized Nitrogenase Complex From Azotobacter Vinelandii
All present enzymatic activity of Cryoem Structure of the 2:1 Adp-Tetrafluoroaluminate Stabilized Nitrogenase Complex From Azotobacter Vinelandii:
1.18.6.1;
Other elements in 8dfd:
The structure of Cryoem Structure of the 2:1 Adp-Tetrafluoroaluminate Stabilized Nitrogenase Complex From Azotobacter Vinelandii also contains other interesting chemical elements:
Iron Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
20;
Page 3, Binding sites: 21 -
30;
Page 4, Binding sites: 31 -
40;
Binding sites:
The binding sites of Iron atom in the Cryoem Structure of the 2:1 Adp-Tetrafluoroaluminate Stabilized Nitrogenase Complex From Azotobacter Vinelandii
(pdb code 8dfd). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 40 binding sites of Iron where determined in the
Cryoem Structure of the 2:1 Adp-Tetrafluoroaluminate Stabilized Nitrogenase Complex From Azotobacter Vinelandii, PDB code: 8dfd:
Jump to Iron binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Iron binding site 1 out
of 40 in 8dfd
Go back to
Iron Binding Sites List in 8dfd
Iron binding site 1 out
of 40 in the Cryoem Structure of the 2:1 Adp-Tetrafluoroaluminate Stabilized Nitrogenase Complex From Azotobacter Vinelandii
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Cryoem Structure of the 2:1 Adp-Tetrafluoroaluminate Stabilized Nitrogenase Complex From Azotobacter Vinelandii within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe600
b:45.1
occ:1.00
|
FE1
|
A:ICS600
|
0.0
|
45.1
|
1.0
|
S2A
|
A:ICS600
|
2.3
|
33.7
|
1.0
|
SG
|
A:CYS275
|
2.3
|
33.2
|
1.0
|
S4A
|
A:ICS600
|
2.3
|
28.9
|
1.0
|
S1A
|
A:ICS600
|
2.3
|
31.8
|
1.0
|
FE4
|
A:ICS600
|
2.6
|
48.9
|
1.0
|
FE3
|
A:ICS600
|
2.7
|
49.2
|
1.0
|
FE2
|
A:ICS600
|
2.7
|
44.9
|
1.0
|
CB
|
A:CYS275
|
3.3
|
25.4
|
1.0
|
CX
|
A:ICS600
|
3.4
|
30.1
|
1.0
|
OG
|
A:SER278
|
3.8
|
37.9
|
1.0
|
CB
|
A:LEU358
|
4.1
|
23.3
|
1.0
|
CB
|
A:SER278
|
4.1
|
31.3
|
1.0
|
CE2
|
A:TYR229
|
4.5
|
23.1
|
1.0
|
CA
|
A:CYS275
|
4.6
|
28.8
|
1.0
|
CD2
|
A:LEU358
|
4.6
|
26.3
|
1.0
|
N
|
A:LEU358
|
4.8
|
27.1
|
1.0
|
N
|
A:SER278
|
4.8
|
32.0
|
1.0
|
S3A
|
A:ICS600
|
4.8
|
29.7
|
1.0
|
S5A
|
A:ICS600
|
4.8
|
32.2
|
1.0
|
S2B
|
A:ICS600
|
4.8
|
28.0
|
1.0
|
CG
|
A:LEU358
|
5.0
|
31.7
|
1.0
|
FE7
|
A:ICS600
|
5.0
|
49.1
|
1.0
|
|
Iron binding site 2 out
of 40 in 8dfd
Go back to
Iron Binding Sites List in 8dfd
Iron binding site 2 out
of 40 in the Cryoem Structure of the 2:1 Adp-Tetrafluoroaluminate Stabilized Nitrogenase Complex From Azotobacter Vinelandii
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Cryoem Structure of the 2:1 Adp-Tetrafluoroaluminate Stabilized Nitrogenase Complex From Azotobacter Vinelandii within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe600
b:44.9
occ:1.00
|
FE2
|
A:ICS600
|
0.0
|
44.9
|
1.0
|
CX
|
A:ICS600
|
2.0
|
30.1
|
1.0
|
S2B
|
A:ICS600
|
2.2
|
28.0
|
1.0
|
S2A
|
A:ICS600
|
2.2
|
33.7
|
1.0
|
S1A
|
A:ICS600
|
2.3
|
31.8
|
1.0
|
FE6
|
A:ICS600
|
2.6
|
43.5
|
1.0
|
FE4
|
A:ICS600
|
2.7
|
48.9
|
1.0
|
FE1
|
A:ICS600
|
2.7
|
45.1
|
1.0
|
FE3
|
A:ICS600
|
2.7
|
49.2
|
1.0
|
FE5
|
A:ICS600
|
3.7
|
46.2
|
1.0
|
FE7
|
A:ICS600
|
3.7
|
49.1
|
1.0
|
CE1
|
A:HIS195
|
3.7
|
30.6
|
1.0
|
S4A
|
A:ICS600
|
3.9
|
28.9
|
1.0
|
NE2
|
A:HIS195
|
3.9
|
21.2
|
1.0
|
CZ
|
A:PHE381
|
4.0
|
29.2
|
1.0
|
S1B
|
A:ICS600
|
4.2
|
28.4
|
1.0
|
S3B
|
A:ICS600
|
4.2
|
27.2
|
1.0
|
CE1
|
A:PHE381
|
4.3
|
30.9
|
1.0
|
CG1
|
A:VAL70
|
4.5
|
16.6
|
1.0
|
S3A
|
A:ICS600
|
4.5
|
29.7
|
1.0
|
S5A
|
A:ICS600
|
4.5
|
32.2
|
1.0
|
SG
|
A:CYS275
|
4.7
|
33.2
|
1.0
|
ND1
|
A:HIS195
|
4.9
|
27.8
|
1.0
|
CG2
|
A:VAL70
|
4.9
|
20.6
|
1.0
|
CB
|
A:SER278
|
4.9
|
31.3
|
1.0
|
N
|
A:GLY357
|
5.0
|
33.4
|
1.0
|
|
Iron binding site 3 out
of 40 in 8dfd
Go back to
Iron Binding Sites List in 8dfd
Iron binding site 3 out
of 40 in the Cryoem Structure of the 2:1 Adp-Tetrafluoroaluminate Stabilized Nitrogenase Complex From Azotobacter Vinelandii
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Cryoem Structure of the 2:1 Adp-Tetrafluoroaluminate Stabilized Nitrogenase Complex From Azotobacter Vinelandii within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe600
b:49.2
occ:1.00
|
FE3
|
A:ICS600
|
0.0
|
49.2
|
1.0
|
CX
|
A:ICS600
|
2.0
|
30.1
|
1.0
|
S5A
|
A:ICS600
|
2.2
|
32.2
|
1.0
|
S4A
|
A:ICS600
|
2.3
|
28.9
|
1.0
|
S2A
|
A:ICS600
|
2.3
|
33.7
|
1.0
|
FE7
|
A:ICS600
|
2.6
|
49.1
|
1.0
|
FE4
|
A:ICS600
|
2.6
|
48.9
|
1.0
|
FE1
|
A:ICS600
|
2.7
|
45.1
|
1.0
|
FE2
|
A:ICS600
|
2.7
|
44.9
|
1.0
|
FE6
|
A:ICS600
|
3.7
|
43.5
|
1.0
|
FE5
|
A:ICS600
|
3.7
|
46.2
|
1.0
|
NH2
|
A:ARG96
|
3.8
|
27.4
|
1.0
|
S1A
|
A:ICS600
|
3.9
|
31.8
|
1.0
|
O
|
A:HOH938
|
4.0
|
28.8
|
1.0
|
CD2
|
A:TYR229
|
4.1
|
26.9
|
1.0
|
S4B
|
A:ICS600
|
4.2
|
21.8
|
1.0
|
S3B
|
A:ICS600
|
4.2
|
27.2
|
1.0
|
CE2
|
A:TYR229
|
4.3
|
23.1
|
1.0
|
S2B
|
A:ICS600
|
4.5
|
28.0
|
1.0
|
S3A
|
A:ICS600
|
4.5
|
29.7
|
1.0
|
SG
|
A:CYS275
|
4.8
|
33.2
|
1.0
|
NE
|
A:ARG359
|
4.9
|
31.2
|
1.0
|
CZ
|
A:ARG96
|
4.9
|
24.9
|
1.0
|
NH2
|
A:ARG359
|
4.9
|
34.8
|
1.0
|
|
Iron binding site 4 out
of 40 in 8dfd
Go back to
Iron Binding Sites List in 8dfd
Iron binding site 4 out
of 40 in the Cryoem Structure of the 2:1 Adp-Tetrafluoroaluminate Stabilized Nitrogenase Complex From Azotobacter Vinelandii
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Cryoem Structure of the 2:1 Adp-Tetrafluoroaluminate Stabilized Nitrogenase Complex From Azotobacter Vinelandii within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe600
b:48.9
occ:1.00
|
FE4
|
A:ICS600
|
0.0
|
48.9
|
1.0
|
CX
|
A:ICS600
|
2.0
|
30.1
|
1.0
|
S3A
|
A:ICS600
|
2.2
|
29.7
|
1.0
|
S4A
|
A:ICS600
|
2.3
|
28.9
|
1.0
|
S1A
|
A:ICS600
|
2.3
|
31.8
|
1.0
|
FE5
|
A:ICS600
|
2.6
|
46.2
|
1.0
|
FE3
|
A:ICS600
|
2.6
|
49.2
|
1.0
|
FE1
|
A:ICS600
|
2.6
|
45.1
|
1.0
|
FE2
|
A:ICS600
|
2.7
|
44.9
|
1.0
|
FE7
|
A:ICS600
|
3.7
|
49.1
|
1.0
|
FE6
|
A:ICS600
|
3.7
|
43.5
|
1.0
|
S2A
|
A:ICS600
|
3.8
|
33.7
|
1.0
|
N
|
A:LEU358
|
3.8
|
27.1
|
1.0
|
N
|
A:GLY357
|
4.0
|
33.4
|
1.0
|
CB
|
A:LEU358
|
4.1
|
23.3
|
1.0
|
S4B
|
A:ICS600
|
4.2
|
21.8
|
1.0
|
S1B
|
A:ICS600
|
4.3
|
28.4
|
1.0
|
S5A
|
A:ICS600
|
4.5
|
32.2
|
1.0
|
S2B
|
A:ICS600
|
4.5
|
28.0
|
1.0
|
CA
|
A:LEU358
|
4.5
|
26.5
|
1.0
|
CG
|
A:ARG359
|
4.6
|
33.5
|
1.0
|
C
|
A:GLY357
|
4.6
|
32.4
|
1.0
|
N
|
A:ARG359
|
4.6
|
34.4
|
1.0
|
SG
|
A:CYS275
|
4.6
|
33.2
|
1.0
|
CA
|
A:GLY357
|
4.7
|
28.5
|
1.0
|
NE
|
A:ARG359
|
4.8
|
31.2
|
1.0
|
CD
|
A:ARG359
|
4.9
|
32.0
|
1.0
|
C
|
A:GLY356
|
5.0
|
33.8
|
1.0
|
CA
|
A:GLY356
|
5.0
|
30.0
|
1.0
|
CZ
|
A:PHE381
|
5.0
|
29.2
|
1.0
|
|
Iron binding site 5 out
of 40 in 8dfd
Go back to
Iron Binding Sites List in 8dfd
Iron binding site 5 out
of 40 in the Cryoem Structure of the 2:1 Adp-Tetrafluoroaluminate Stabilized Nitrogenase Complex From Azotobacter Vinelandii
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of Cryoem Structure of the 2:1 Adp-Tetrafluoroaluminate Stabilized Nitrogenase Complex From Azotobacter Vinelandii within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe600
b:46.2
occ:1.00
|
FE5
|
A:ICS600
|
0.0
|
46.2
|
1.0
|
CX
|
A:ICS600
|
2.0
|
30.1
|
1.0
|
S4B
|
A:ICS600
|
2.3
|
21.8
|
1.0
|
S3A
|
A:ICS600
|
2.3
|
29.7
|
1.0
|
S1B
|
A:ICS600
|
2.3
|
28.4
|
1.0
|
FE4
|
A:ICS600
|
2.6
|
48.9
|
1.0
|
FE6
|
A:ICS600
|
2.6
|
43.5
|
1.0
|
FE7
|
A:ICS600
|
2.6
|
49.1
|
1.0
|
MO1
|
A:ICS600
|
2.7
|
44.8
|
1.0
|
FE2
|
A:ICS600
|
3.7
|
44.9
|
1.0
|
FE3
|
A:ICS600
|
3.7
|
49.2
|
1.0
|
ND1
|
A:HIS442
|
3.7
|
25.1
|
1.0
|
S3B
|
A:ICS600
|
3.9
|
27.2
|
1.0
|
N
|
A:GLY356
|
4.0
|
31.7
|
1.0
|
CE1
|
A:HIS442
|
4.0
|
24.6
|
1.0
|
CG2
|
A:ILE355
|
4.1
|
28.7
|
1.0
|
CA
|
A:GLY356
|
4.2
|
30.0
|
1.0
|
S1A
|
A:ICS600
|
4.3
|
31.8
|
1.0
|
S4A
|
A:ICS600
|
4.3
|
28.9
|
1.0
|
S2B
|
A:ICS600
|
4.5
|
28.0
|
1.0
|
S5A
|
A:ICS600
|
4.5
|
32.2
|
1.0
|
O7
|
A:HCA601
|
4.6
|
30.9
|
1.0
|
N
|
A:GLY357
|
4.6
|
33.4
|
1.0
|
CG
|
A:HIS442
|
4.7
|
23.2
|
1.0
|
CD
|
A:ARG359
|
4.7
|
32.0
|
1.0
|
O6
|
A:HCA601
|
4.7
|
33.4
|
1.0
|
NE
|
A:ARG359
|
4.9
|
31.2
|
1.0
|
CZ
|
A:PHE381
|
4.9
|
29.2
|
1.0
|
C
|
A:GLY356
|
5.0
|
33.8
|
1.0
|
|
Iron binding site 6 out
of 40 in 8dfd
Go back to
Iron Binding Sites List in 8dfd
Iron binding site 6 out
of 40 in the Cryoem Structure of the 2:1 Adp-Tetrafluoroaluminate Stabilized Nitrogenase Complex From Azotobacter Vinelandii
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of Cryoem Structure of the 2:1 Adp-Tetrafluoroaluminate Stabilized Nitrogenase Complex From Azotobacter Vinelandii within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe600
b:43.5
occ:1.00
|
FE6
|
A:ICS600
|
0.0
|
43.5
|
1.0
|
CX
|
A:ICS600
|
2.0
|
30.1
|
1.0
|
S2B
|
A:ICS600
|
2.2
|
28.0
|
1.0
|
S3B
|
A:ICS600
|
2.2
|
27.2
|
1.0
|
S1B
|
A:ICS600
|
2.2
|
28.4
|
1.0
|
FE7
|
A:ICS600
|
2.6
|
49.1
|
1.0
|
FE2
|
A:ICS600
|
2.6
|
44.9
|
1.0
|
FE5
|
A:ICS600
|
2.6
|
46.2
|
1.0
|
MO1
|
A:ICS600
|
2.7
|
44.8
|
1.0
|
O7
|
A:HCA601
|
3.7
|
30.9
|
1.0
|
FE3
|
A:ICS600
|
3.7
|
49.2
|
1.0
|
FE4
|
A:ICS600
|
3.7
|
48.9
|
1.0
|
S4B
|
A:ICS600
|
3.8
|
21.8
|
1.0
|
CZ
|
A:PHE381
|
4.0
|
29.2
|
1.0
|
S2A
|
A:ICS600
|
4.2
|
33.7
|
1.0
|
O1
|
A:HCA601
|
4.2
|
34.1
|
1.0
|
CG2
|
A:VAL70
|
4.3
|
20.6
|
1.0
|
S1A
|
A:ICS600
|
4.3
|
31.8
|
1.0
|
O6
|
A:HCA601
|
4.4
|
33.4
|
1.0
|
S5A
|
A:ICS600
|
4.4
|
32.2
|
1.0
|
S3A
|
A:ICS600
|
4.5
|
29.7
|
1.0
|
CE2
|
A:PHE381
|
4.6
|
25.0
|
1.0
|
ND1
|
A:HIS442
|
4.7
|
25.1
|
1.0
|
C3
|
A:HCA601
|
4.8
|
32.1
|
1.0
|
C1
|
A:HCA601
|
5.0
|
31.9
|
1.0
|
NE
|
A:ARG96
|
5.0
|
30.4
|
1.0
|
C7
|
A:HCA601
|
5.0
|
28.9
|
1.0
|
|
Iron binding site 7 out
of 40 in 8dfd
Go back to
Iron Binding Sites List in 8dfd
Iron binding site 7 out
of 40 in the Cryoem Structure of the 2:1 Adp-Tetrafluoroaluminate Stabilized Nitrogenase Complex From Azotobacter Vinelandii
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 7 of Cryoem Structure of the 2:1 Adp-Tetrafluoroaluminate Stabilized Nitrogenase Complex From Azotobacter Vinelandii within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe600
b:49.1
occ:1.00
|
FE7
|
A:ICS600
|
0.0
|
49.1
|
1.0
|
CX
|
A:ICS600
|
2.0
|
30.1
|
1.0
|
S5A
|
A:ICS600
|
2.2
|
32.2
|
1.0
|
S4B
|
A:ICS600
|
2.2
|
21.8
|
1.0
|
S3B
|
A:ICS600
|
2.3
|
27.2
|
1.0
|
FE3
|
A:ICS600
|
2.6
|
49.2
|
1.0
|
FE6
|
A:ICS600
|
2.6
|
43.5
|
1.0
|
FE5
|
A:ICS600
|
2.6
|
46.2
|
1.0
|
MO1
|
A:ICS600
|
2.7
|
44.8
|
1.0
|
O
|
A:HOH760
|
3.6
|
18.9
|
1.0
|
O6
|
A:HCA601
|
3.7
|
33.4
|
1.0
|
FE4
|
A:ICS600
|
3.7
|
48.9
|
1.0
|
FE2
|
A:ICS600
|
3.7
|
44.9
|
1.0
|
S1B
|
A:ICS600
|
3.8
|
28.4
|
1.0
|
NE
|
A:ARG96
|
3.9
|
30.4
|
1.0
|
NH2
|
A:ARG96
|
3.9
|
27.4
|
1.0
|
S2A
|
A:ICS600
|
4.3
|
33.7
|
1.0
|
S4A
|
A:ICS600
|
4.3
|
28.9
|
1.0
|
CZ
|
A:ARG96
|
4.4
|
24.9
|
1.0
|
S2B
|
A:ICS600
|
4.4
|
28.0
|
1.0
|
S3A
|
A:ICS600
|
4.5
|
29.7
|
1.0
|
O7
|
A:HCA601
|
4.6
|
30.9
|
1.0
|
CZ
|
A:ARG359
|
4.6
|
32.0
|
1.0
|
ND1
|
A:HIS442
|
4.7
|
25.1
|
1.0
|
NH2
|
A:ARG359
|
4.7
|
34.8
|
1.0
|
C7
|
A:HCA601
|
4.7
|
28.9
|
1.0
|
NH1
|
A:ARG359
|
4.8
|
31.9
|
1.0
|
NE
|
A:ARG359
|
4.9
|
31.2
|
1.0
|
CD
|
A:ARG96
|
4.9
|
25.8
|
1.0
|
FE1
|
A:ICS600
|
5.0
|
45.1
|
1.0
|
|
Iron binding site 8 out
of 40 in 8dfd
Go back to
Iron Binding Sites List in 8dfd
Iron binding site 8 out
of 40 in the Cryoem Structure of the 2:1 Adp-Tetrafluoroaluminate Stabilized Nitrogenase Complex From Azotobacter Vinelandii
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 8 of Cryoem Structure of the 2:1 Adp-Tetrafluoroaluminate Stabilized Nitrogenase Complex From Azotobacter Vinelandii within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe600
b:41.8
occ:1.00
|
FE1
|
B:CLF600
|
0.0
|
41.8
|
1.0
|
SG
|
A:CYS154
|
2.3
|
21.0
|
1.0
|
S2A
|
B:CLF600
|
2.3
|
13.2
|
1.0
|
S3A
|
B:CLF600
|
2.3
|
22.8
|
1.0
|
S1
|
B:CLF600
|
2.4
|
19.5
|
1.0
|
FE2
|
B:CLF600
|
2.5
|
35.5
|
1.0
|
FE4
|
B:CLF600
|
2.6
|
37.5
|
1.0
|
FE3
|
B:CLF600
|
2.8
|
31.1
|
1.0
|
CB
|
A:CYS154
|
3.5
|
13.3
|
1.0
|
O
|
B:HOH933
|
3.5
|
19.4
|
1.0
|
CA
|
A:GLY185
|
3.8
|
17.0
|
1.0
|
S4A
|
B:CLF600
|
3.8
|
12.0
|
1.0
|
N
|
A:CYS154
|
3.9
|
18.2
|
1.0
|
N
|
A:GLY185
|
3.9
|
17.3
|
1.0
|
SG
|
B:CYS95
|
4.0
|
25.0
|
1.0
|
CA
|
A:CYS154
|
4.3
|
15.7
|
1.0
|
FE8
|
B:CLF600
|
4.4
|
41.8
|
1.0
|
CB
|
B:SER92
|
4.5
|
18.9
|
1.0
|
SG
|
A:CYS88
|
4.6
|
18.8
|
1.0
|
C
|
A:GLY185
|
4.6
|
21.6
|
1.0
|
FE5
|
B:CLF600
|
4.6
|
34.0
|
1.0
|
SG
|
B:CYS153
|
4.7
|
28.6
|
1.0
|
N
|
A:PHE186
|
4.8
|
21.5
|
1.0
|
OG
|
B:SER92
|
4.9
|
33.1
|
1.0
|
FE6
|
B:CLF600
|
4.9
|
43.8
|
1.0
|
SG
|
A:CYS62
|
4.9
|
23.5
|
1.0
|
C
|
A:GLU153
|
4.9
|
15.2
|
1.0
|
|
Iron binding site 9 out
of 40 in 8dfd
Go back to
Iron Binding Sites List in 8dfd
Iron binding site 9 out
of 40 in the Cryoem Structure of the 2:1 Adp-Tetrafluoroaluminate Stabilized Nitrogenase Complex From Azotobacter Vinelandii
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 9 of Cryoem Structure of the 2:1 Adp-Tetrafluoroaluminate Stabilized Nitrogenase Complex From Azotobacter Vinelandii within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe600
b:35.5
occ:1.00
|
FE2
|
B:CLF600
|
0.0
|
35.5
|
1.0
|
SG
|
B:CYS95
|
2.2
|
25.0
|
1.0
|
S4A
|
B:CLF600
|
2.3
|
12.0
|
1.0
|
S2A
|
B:CLF600
|
2.3
|
13.2
|
1.0
|
S1
|
B:CLF600
|
2.5
|
19.5
|
1.0
|
FE1
|
B:CLF600
|
2.5
|
41.8
|
1.0
|
FE4
|
B:CLF600
|
2.6
|
37.5
|
1.0
|
FE3
|
B:CLF600
|
2.8
|
31.1
|
1.0
|
FE8
|
B:CLF600
|
3.0
|
41.8
|
1.0
|
N
|
B:CYS95
|
3.2
|
21.3
|
1.0
|
CB
|
B:CYS95
|
3.4
|
13.4
|
1.0
|
CA
|
B:CYS95
|
3.5
|
16.8
|
1.0
|
S3A
|
B:CLF600
|
3.8
|
22.8
|
1.0
|
FE5
|
B:CLF600
|
3.8
|
34.0
|
1.0
|
C
|
B:GLY94
|
3.9
|
17.1
|
1.0
|
S4B
|
B:CLF600
|
4.0
|
14.0
|
1.0
|
O
|
B:HOH933
|
4.2
|
19.4
|
1.0
|
SG
|
A:CYS88
|
4.4
|
18.8
|
1.0
|
CA
|
B:GLY94
|
4.5
|
7.8
|
1.0
|
SG
|
A:CYS154
|
4.6
|
21.0
|
1.0
|
FE6
|
B:CLF600
|
4.6
|
43.8
|
1.0
|
O
|
B:GLY94
|
4.6
|
29.2
|
1.0
|
CB
|
B:SER92
|
4.7
|
18.9
|
1.0
|
SG
|
A:CYS62
|
4.7
|
23.5
|
1.0
|
N
|
B:GLY94
|
4.9
|
18.8
|
1.0
|
O
|
B:SER92
|
5.0
|
26.1
|
1.0
|
|
Iron binding site 10 out
of 40 in 8dfd
Go back to
Iron Binding Sites List in 8dfd
Iron binding site 10 out
of 40 in the Cryoem Structure of the 2:1 Adp-Tetrafluoroaluminate Stabilized Nitrogenase Complex From Azotobacter Vinelandii
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 10 of Cryoem Structure of the 2:1 Adp-Tetrafluoroaluminate Stabilized Nitrogenase Complex From Azotobacter Vinelandii within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe600
b:31.1
occ:1.00
|
FE3
|
B:CLF600
|
0.0
|
31.1
|
1.0
|
S4A
|
B:CLF600
|
2.3
|
12.0
|
1.0
|
SG
|
A:CYS62
|
2.3
|
23.5
|
1.0
|
S2A
|
B:CLF600
|
2.3
|
13.2
|
1.0
|
S3A
|
B:CLF600
|
2.3
|
22.8
|
1.0
|
FE4
|
B:CLF600
|
2.7
|
37.5
|
1.0
|
FE2
|
B:CLF600
|
2.8
|
35.5
|
1.0
|
FE1
|
B:CLF600
|
2.8
|
41.8
|
1.0
|
CB
|
A:CYS62
|
3.3
|
15.2
|
1.0
|
CA
|
A:GLY185
|
3.7
|
17.0
|
1.0
|
CB
|
A:TYR64
|
3.9
|
13.8
|
1.0
|
S1
|
B:CLF600
|
4.2
|
19.5
|
1.0
|
N
|
A:GLY185
|
4.4
|
17.3
|
1.0
|
CD1
|
A:TYR64
|
4.4
|
13.5
|
1.0
|
CA
|
B:GLY94
|
4.4
|
7.8
|
1.0
|
CG
|
A:TYR64
|
4.5
|
17.6
|
1.0
|
C
|
B:GLY94
|
4.6
|
17.1
|
1.0
|
N
|
B:CYS95
|
4.7
|
21.3
|
1.0
|
CA
|
A:CYS62
|
4.7
|
16.9
|
1.0
|
SG
|
A:CYS88
|
4.7
|
18.8
|
1.0
|
O
|
B:HOH958
|
4.7
|
19.7
|
1.0
|
N
|
A:TYR64
|
4.8
|
18.8
|
1.0
|
SG
|
A:CYS154
|
4.8
|
21.0
|
1.0
|
C
|
A:GLY185
|
4.8
|
21.6
|
1.0
|
CE2
|
B:TYR98
|
4.8
|
17.0
|
1.0
|
CA
|
A:TYR64
|
4.9
|
15.3
|
1.0
|
SG
|
B:CYS95
|
4.9
|
25.0
|
1.0
|
|
Reference:
R.A.Warmack,
D.C.Rees.
Anaerobic Single Particle Cryoem of Nitrogenase To Be Published.
Page generated: Fri Aug 9 23:29:36 2024
|