Iron in PDB 8dmg: CYP102A1 in Closed Conformation

The binding sites of Iron atom in the CYP102A1 in Closed Conformation (pdb code 8dmg). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the CYP102A1 in Closed Conformation, PDB code: 8dmg:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in the CYP102A1 in Closed Conformation


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of CYP102A1 in Closed Conformation within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe1101 b:11.9 occ:1.00 FE A:HEM1101 0.0 11.9 1.0 NB A:HEM1101 2.0 8.9 1.0 ND A:HEM1101 2.0 9.2 1.0 NC A:HEM1101 2.1 11.5 1.0 NA A:HEM1101 2.1 12.8 1.0 SG A:CYS400 2.3 11.6 1.0 C1D A:HEM1101 3.0 6.7 1.0 C4D A:HEM1101 3.0 11.8 1.0 C4C A:HEM1101 3.0 10.9 1.0 C4A A:HEM1101 3.1 12.5 1.0 C1B A:HEM1101 3.1 14.1 1.0 C4B A:HEM1101 3.1 12.6 1.0 C1C A:HEM1101 3.1 10.7 1.0 C1A A:HEM1101 3.1 10.7 1.0 CB A:CYS400 3.3 11.0 1.0 CHD A:HEM1101 3.4 10.0 1.0 CHB A:HEM1101 3.4 10.9 1.0 CHC A:HEM1101 3.4 9.9 1.0 CHA A:HEM1101 3.5 10.5 1.0 CA A:CYS400 3.9 11.5 1.0 C1 A:1C61102 4.1 41.3 1.0 C2D A:HEM1101 4.2 7.5 1.0 C3D A:HEM1101 4.3 11.3 1.0 C3B A:HEM1101 4.3 7.3 1.0 C3C A:HEM1101 4.3 12.5 1.0 C2C A:HEM1101 4.3 13.5 1.0 C2B A:HEM1101 4.3 8.1 1.0 C3A A:HEM1101 4.3 12.4 1.0 C2A A:HEM1101 4.4 11.9 1.0 C A:CYS400 4.8 12.5 1.0 N A:GLY402 4.8 12.2 1.0 O A:ALA264 4.9 14.1 1.0 N A:ILE401 4.9 12.3 1.0 CE2 A:PHE87 5.0 18.1 0.2

Iron binding site 2 out of 2 in the CYP102A1 in Closed Conformation


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of CYP102A1 in Closed Conformation within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe1101 b:11.9 occ:1.00 FE B:HEM1101 0.0 11.9 1.0 NB B:HEM1101 2.0 8.9 1.0 ND B:HEM1101 2.0 9.2 1.0 NC B:HEM1101 2.1 11.5 1.0 NA B:HEM1101 2.1 12.8 1.0 SG B:CYS400 2.3 11.6 1.0 C1D B:HEM1101 3.0 6.7 1.0 C4D B:HEM1101 3.0 11.8 1.0 C4C B:HEM1101 3.0 10.9 1.0 C4A B:HEM1101 3.1 12.5 1.0 C4B B:HEM1101 3.1 12.6 1.0 C1B B:HEM1101 3.1 14.1 1.0 C1C B:HEM1101 3.1 10.7 1.0 C1A B:HEM1101 3.1 10.7 1.0 CB B:CYS400 3.3 11.0 1.0 CHD B:HEM1101 3.4 10.0 1.0 CHB B:HEM1101 3.4 10.9 1.0 CHC B:HEM1101 3.4 9.9 1.0 CHA B:HEM1101 3.5 10.5 1.0 CA B:CYS400 3.9 11.5 1.0 C1 B:1C61102 4.1 41.3 1.0 C2D B:HEM1101 4.2 7.5 1.0 C3D B:HEM1101 4.3 11.3 1.0 C3B B:HEM1101 4.3 7.3 1.0 C3C B:HEM1101 4.3 12.5 1.0 C2C B:HEM1101 4.3 13.5 1.0 C2B B:HEM1101 4.3 8.1 1.0 C3A B:HEM1101 4.3 12.4 1.0 C2A B:HEM1101 4.4 11.9 1.0 C B:CYS400 4.8 12.5 1.0 N B:GLY402 4.8 12.2 1.0 O B:ALA264 4.9 14.1 1.0 N B:ILE401 4.9 12.3 1.0 CE2 B:PHE87 5.0 18.1 0.2

M.Su, H.Xu. Insight Into the Conformational Dynamics of Cytochrome P450 CYP102A1 Enzyme Using Cryo-Em To Be Published.