Iron in PDB 8e3v: Cobalt-Reconstituted Nitrogenase Mofep Mutant S188A From Azotobacter Vinelandii After Ids Oxidation
Enzymatic activity of Cobalt-Reconstituted Nitrogenase Mofep Mutant S188A From Azotobacter Vinelandii After Ids Oxidation
All present enzymatic activity of Cobalt-Reconstituted Nitrogenase Mofep Mutant S188A From Azotobacter Vinelandii After Ids Oxidation:
1.18.6.1;
Protein crystallography data
The structure of Cobalt-Reconstituted Nitrogenase Mofep Mutant S188A From Azotobacter Vinelandii After Ids Oxidation, PDB code: 8e3v
was solved by
H.L.Rutledge,
F.A.Tezcan,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
80.17 /
2.00
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
77.127,
130.039,
107.76,
90,
109.12,
90
|
R / Rfree (%)
|
18.2 /
20.8
|
Other elements in 8e3v:
The structure of Cobalt-Reconstituted Nitrogenase Mofep Mutant S188A From Azotobacter Vinelandii After Ids Oxidation also contains other interesting chemical elements:
Iron Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
20;
Page 3, Binding sites: 21 -
30;
Page 4, Binding sites: 31 -
32;
Binding sites:
The binding sites of Iron atom in the Cobalt-Reconstituted Nitrogenase Mofep Mutant S188A From Azotobacter Vinelandii After Ids Oxidation
(pdb code 8e3v). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 32 binding sites of Iron where determined in the
Cobalt-Reconstituted Nitrogenase Mofep Mutant S188A From Azotobacter Vinelandii After Ids Oxidation, PDB code: 8e3v:
Jump to Iron binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Iron binding site 1 out
of 32 in 8e3v
Go back to
Iron Binding Sites List in 8e3v
Iron binding site 1 out
of 32 in the Cobalt-Reconstituted Nitrogenase Mofep Mutant S188A From Azotobacter Vinelandii After Ids Oxidation
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Cobalt-Reconstituted Nitrogenase Mofep Mutant S188A From Azotobacter Vinelandii After Ids Oxidation within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe502
b:24.2
occ:1.00
|
FE1
|
A:ICS502
|
0.0
|
24.2
|
1.0
|
S2A
|
A:ICS502
|
2.3
|
21.8
|
1.0
|
S4A
|
A:ICS502
|
2.3
|
19.8
|
1.0
|
S1A
|
A:ICS502
|
2.3
|
22.0
|
1.0
|
SG
|
A:CYS275
|
2.5
|
24.2
|
1.0
|
FE4
|
A:ICS502
|
2.6
|
22.6
|
1.0
|
FE2
|
A:ICS502
|
2.7
|
22.6
|
1.0
|
FE3
|
A:ICS502
|
2.7
|
21.1
|
1.0
|
HB2
|
A:CYS275
|
2.9
|
25.0
|
1.0
|
HG
|
A:SER278
|
3.0
|
34.2
|
1.0
|
CB
|
A:CYS275
|
3.2
|
20.8
|
1.0
|
CX
|
A:ICS502
|
3.4
|
16.1
|
1.0
|
HB3
|
A:LEU358
|
3.5
|
25.6
|
1.0
|
HB2
|
A:LEU358
|
3.6
|
25.6
|
1.0
|
HB3
|
A:CYS275
|
3.7
|
25.0
|
1.0
|
HB3
|
A:SER278
|
3.8
|
30.6
|
1.0
|
OG
|
A:SER278
|
3.8
|
28.5
|
1.0
|
HE2
|
A:TYR229
|
3.8
|
33.4
|
1.0
|
CB
|
A:LEU358
|
4.0
|
21.3
|
1.0
|
HD22
|
A:LEU358
|
4.0
|
33.1
|
1.0
|
H
|
A:SER278
|
4.0
|
29.2
|
1.0
|
HB3
|
A:ARG277
|
4.3
|
30.9
|
1.0
|
CB
|
A:SER278
|
4.4
|
25.5
|
1.0
|
HD23
|
A:LEU358
|
4.4
|
33.1
|
1.0
|
HA
|
A:CYS275
|
4.5
|
28.1
|
1.0
|
CA
|
A:CYS275
|
4.5
|
23.4
|
1.0
|
CE2
|
A:TYR229
|
4.5
|
27.9
|
1.0
|
CD2
|
A:LEU358
|
4.6
|
27.6
|
1.0
|
HD2
|
A:TYR229
|
4.6
|
26.9
|
1.0
|
H
|
A:LEU358
|
4.7
|
29.4
|
1.0
|
S3A
|
A:ICS502
|
4.8
|
19.9
|
1.0
|
S2B
|
A:ICS502
|
4.8
|
16.1
|
1.0
|
S5A
|
A:ICS502
|
4.8
|
17.3
|
1.0
|
N
|
A:LEU358
|
4.8
|
24.5
|
1.0
|
H
|
A:GLY357
|
4.9
|
28.3
|
1.0
|
N
|
A:SER278
|
4.9
|
24.4
|
1.0
|
CD2
|
A:TYR229
|
4.9
|
22.4
|
1.0
|
HH
|
A:TYR229
|
4.9
|
30.6
|
1.0
|
CG
|
A:LEU358
|
4.9
|
24.3
|
1.0
|
FE6
|
A:ICS502
|
5.0
|
21.4
|
1.0
|
FE5
|
A:ICS502
|
5.0
|
21.4
|
1.0
|
FE7
|
A:ICS502
|
5.0
|
20.7
|
1.0
|
|
Iron binding site 2 out
of 32 in 8e3v
Go back to
Iron Binding Sites List in 8e3v
Iron binding site 2 out
of 32 in the Cobalt-Reconstituted Nitrogenase Mofep Mutant S188A From Azotobacter Vinelandii After Ids Oxidation
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Cobalt-Reconstituted Nitrogenase Mofep Mutant S188A From Azotobacter Vinelandii After Ids Oxidation within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe502
b:22.6
occ:1.00
|
FE2
|
A:ICS502
|
0.0
|
22.6
|
1.0
|
CX
|
A:ICS502
|
2.0
|
16.1
|
1.0
|
S2B
|
A:ICS502
|
2.2
|
16.1
|
1.0
|
S2A
|
A:ICS502
|
2.2
|
21.8
|
1.0
|
S1A
|
A:ICS502
|
2.3
|
22.0
|
1.0
|
FE6
|
A:ICS502
|
2.6
|
21.4
|
1.0
|
FE1
|
A:ICS502
|
2.7
|
24.2
|
1.0
|
FE4
|
A:ICS502
|
2.7
|
22.6
|
1.0
|
FE3
|
A:ICS502
|
2.7
|
21.1
|
1.0
|
HZ
|
A:PHE381
|
3.2
|
28.7
|
1.0
|
FE5
|
A:ICS502
|
3.7
|
21.4
|
1.0
|
FE7
|
A:ICS502
|
3.7
|
20.7
|
1.0
|
HE1
|
A:HIS195
|
3.7
|
33.7
|
1.0
|
HE2
|
A:HIS195
|
3.8
|
31.8
|
1.0
|
S4A
|
A:ICS502
|
3.9
|
19.8
|
1.0
|
HH21
|
A:ARG96
|
4.0
|
32.3
|
1.0
|
HB3
|
A:SER278
|
4.0
|
30.6
|
1.0
|
CZ
|
A:PHE381
|
4.0
|
23.9
|
1.0
|
HE1
|
A:PHE381
|
4.1
|
30.5
|
1.0
|
CE1
|
A:HIS195
|
4.2
|
28.1
|
1.0
|
NE2
|
A:HIS195
|
4.2
|
26.5
|
1.0
|
S1B
|
A:ICS502
|
4.2
|
15.8
|
1.0
|
HG11
|
A:VAL70
|
4.2
|
29.4
|
1.0
|
S3B
|
A:ICS502
|
4.2
|
17.2
|
1.0
|
HG
|
A:SER278
|
4.4
|
34.2
|
1.0
|
HG21
|
A:VAL70
|
4.4
|
38.7
|
1.0
|
H
|
A:GLY357
|
4.4
|
28.3
|
1.0
|
CE1
|
A:PHE381
|
4.5
|
25.4
|
1.0
|
S3A
|
A:ICS502
|
4.5
|
19.9
|
1.0
|
S5A
|
A:ICS502
|
4.5
|
17.3
|
1.0
|
HB
|
A:VAL70
|
4.5
|
30.2
|
1.0
|
NH2
|
A:ARG96
|
4.7
|
26.9
|
1.0
|
SG
|
A:CYS275
|
4.8
|
24.2
|
1.0
|
HA3
|
A:GLY356
|
4.8
|
26.2
|
1.0
|
HH22
|
A:ARG96
|
4.8
|
32.3
|
1.0
|
N
|
A:GLY357
|
5.0
|
23.6
|
1.0
|
CG1
|
A:VAL70
|
5.0
|
24.5
|
1.0
|
CB
|
A:SER278
|
5.0
|
25.5
|
1.0
|
|
Iron binding site 3 out
of 32 in 8e3v
Go back to
Iron Binding Sites List in 8e3v
Iron binding site 3 out
of 32 in the Cobalt-Reconstituted Nitrogenase Mofep Mutant S188A From Azotobacter Vinelandii After Ids Oxidation
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Cobalt-Reconstituted Nitrogenase Mofep Mutant S188A From Azotobacter Vinelandii After Ids Oxidation within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe502
b:21.1
occ:1.00
|
FE3
|
A:ICS502
|
0.0
|
21.1
|
1.0
|
CX
|
A:ICS502
|
2.0
|
16.1
|
1.0
|
S5A
|
A:ICS502
|
2.2
|
17.3
|
1.0
|
S4A
|
A:ICS502
|
2.3
|
19.8
|
1.0
|
S2A
|
A:ICS502
|
2.3
|
21.8
|
1.0
|
FE7
|
A:ICS502
|
2.6
|
20.7
|
1.0
|
FE4
|
A:ICS502
|
2.6
|
22.6
|
1.0
|
FE1
|
A:ICS502
|
2.7
|
24.2
|
1.0
|
FE2
|
A:ICS502
|
2.7
|
22.6
|
1.0
|
HH21
|
A:ARG96
|
2.9
|
32.3
|
1.0
|
FE6
|
A:ICS502
|
3.7
|
21.4
|
1.0
|
HD2
|
A:TYR229
|
3.7
|
26.9
|
1.0
|
FE5
|
A:ICS502
|
3.7
|
21.4
|
1.0
|
NH2
|
A:ARG96
|
3.7
|
26.9
|
1.0
|
O
|
A:HOH847
|
3.8
|
27.2
|
1.0
|
S1A
|
A:ICS502
|
3.9
|
22.0
|
1.0
|
HH22
|
A:ARG96
|
3.9
|
32.3
|
1.0
|
CD2
|
A:TYR229
|
4.1
|
22.4
|
1.0
|
S4B
|
A:ICS502
|
4.2
|
18.6
|
1.0
|
S3B
|
A:ICS502
|
4.2
|
17.2
|
1.0
|
HE2
|
A:TYR229
|
4.3
|
33.4
|
1.0
|
S2B
|
A:ICS502
|
4.4
|
16.1
|
1.0
|
CE2
|
A:TYR229
|
4.5
|
27.9
|
1.0
|
S3A
|
A:ICS502
|
4.5
|
19.9
|
1.0
|
HB2
|
A:CYS275
|
4.6
|
25.0
|
1.0
|
HE
|
A:ARG96
|
4.6
|
27.8
|
1.0
|
HG
|
A:SER278
|
4.7
|
34.2
|
1.0
|
HB2
|
A:TYR229
|
4.7
|
24.8
|
1.0
|
CZ
|
A:ARG96
|
4.9
|
23.6
|
1.0
|
HB3
|
A:LEU358
|
4.9
|
25.6
|
1.0
|
HB
|
A:VAL70
|
4.9
|
30.2
|
1.0
|
CG
|
A:TYR229
|
5.0
|
23.1
|
1.0
|
|
Iron binding site 4 out
of 32 in 8e3v
Go back to
Iron Binding Sites List in 8e3v
Iron binding site 4 out
of 32 in the Cobalt-Reconstituted Nitrogenase Mofep Mutant S188A From Azotobacter Vinelandii After Ids Oxidation
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Cobalt-Reconstituted Nitrogenase Mofep Mutant S188A From Azotobacter Vinelandii After Ids Oxidation within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe502
b:22.6
occ:1.00
|
FE4
|
A:ICS502
|
0.0
|
22.6
|
1.0
|
CX
|
A:ICS502
|
2.0
|
16.1
|
1.0
|
S3A
|
A:ICS502
|
2.2
|
19.9
|
1.0
|
S1A
|
A:ICS502
|
2.3
|
22.0
|
1.0
|
S4A
|
A:ICS502
|
2.3
|
19.8
|
1.0
|
FE5
|
A:ICS502
|
2.6
|
21.4
|
1.0
|
FE3
|
A:ICS502
|
2.6
|
21.1
|
1.0
|
FE1
|
A:ICS502
|
2.6
|
24.2
|
1.0
|
FE2
|
A:ICS502
|
2.7
|
22.6
|
1.0
|
HB3
|
A:LEU358
|
3.1
|
25.6
|
1.0
|
H
|
A:GLY357
|
3.2
|
28.3
|
1.0
|
H
|
A:LEU358
|
3.3
|
29.4
|
1.0
|
H
|
A:ARG359
|
3.6
|
30.2
|
1.0
|
FE7
|
A:ICS502
|
3.7
|
20.7
|
1.0
|
FE6
|
A:ICS502
|
3.7
|
21.4
|
1.0
|
S2A
|
A:ICS502
|
3.8
|
21.8
|
1.0
|
HG3
|
A:ARG359
|
3.9
|
24.1
|
1.0
|
N
|
A:LEU358
|
3.9
|
24.5
|
1.0
|
CB
|
A:LEU358
|
4.0
|
21.3
|
1.0
|
N
|
A:GLY357
|
4.0
|
23.6
|
1.0
|
HB2
|
A:LEU358
|
4.1
|
25.6
|
1.0
|
HA3
|
A:GLY356
|
4.2
|
26.2
|
1.0
|
S4B
|
A:ICS502
|
4.2
|
18.6
|
1.0
|
HZ
|
A:PHE381
|
4.3
|
28.7
|
1.0
|
S1B
|
A:ICS502
|
4.3
|
15.8
|
1.0
|
HD2
|
A:ARG359
|
4.4
|
25.9
|
1.0
|
S5A
|
A:ICS502
|
4.5
|
17.3
|
1.0
|
CA
|
A:LEU358
|
4.5
|
21.2
|
1.0
|
S2B
|
A:ICS502
|
4.5
|
16.1
|
1.0
|
N
|
A:ARG359
|
4.6
|
25.2
|
1.0
|
H
|
A:GLY356
|
4.6
|
24.3
|
1.0
|
HD23
|
A:LEU358
|
4.6
|
33.1
|
1.0
|
C
|
A:GLY357
|
4.6
|
25.0
|
1.0
|
CA
|
A:GLY357
|
4.7
|
24.8
|
1.0
|
HB2
|
A:ARG359
|
4.7
|
21.9
|
1.0
|
HA3
|
A:GLY357
|
4.7
|
29.8
|
1.0
|
CG
|
A:ARG359
|
4.8
|
20.1
|
1.0
|
HG22
|
A:ILE355
|
4.8
|
27.0
|
1.0
|
SG
|
A:CYS275
|
4.8
|
24.2
|
1.0
|
CA
|
A:GLY356
|
4.9
|
21.8
|
1.0
|
CD
|
A:ARG359
|
4.9
|
21.6
|
1.0
|
C
|
A:GLY356
|
4.9
|
20.5
|
1.0
|
|
Iron binding site 5 out
of 32 in 8e3v
Go back to
Iron Binding Sites List in 8e3v
Iron binding site 5 out
of 32 in the Cobalt-Reconstituted Nitrogenase Mofep Mutant S188A From Azotobacter Vinelandii After Ids Oxidation
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of Cobalt-Reconstituted Nitrogenase Mofep Mutant S188A From Azotobacter Vinelandii After Ids Oxidation within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe502
b:21.4
occ:1.00
|
FE5
|
A:ICS502
|
0.0
|
21.4
|
1.0
|
CX
|
A:ICS502
|
2.0
|
16.1
|
1.0
|
S4B
|
A:ICS502
|
2.2
|
18.6
|
1.0
|
S1B
|
A:ICS502
|
2.3
|
15.8
|
1.0
|
S3A
|
A:ICS502
|
2.3
|
19.9
|
1.0
|
FE4
|
A:ICS502
|
2.6
|
22.6
|
1.0
|
FE6
|
A:ICS502
|
2.6
|
21.4
|
1.0
|
FE7
|
A:ICS502
|
2.6
|
20.7
|
1.0
|
MO1
|
A:ICS502
|
2.7
|
17.9
|
1.0
|
HG22
|
A:ILE355
|
3.2
|
27.0
|
1.0
|
HA3
|
A:GLY356
|
3.3
|
26.2
|
1.0
|
H
|
A:GLY356
|
3.6
|
24.3
|
1.0
|
FE2
|
A:ICS502
|
3.7
|
22.6
|
1.0
|
FE3
|
A:ICS502
|
3.7
|
21.1
|
1.0
|
HD2
|
A:ARG359
|
3.8
|
25.9
|
1.0
|
ND1
|
A:HIS442
|
3.8
|
18.3
|
1.0
|
S3B
|
A:ICS502
|
3.9
|
17.2
|
1.0
|
HG21
|
A:ILE355
|
3.9
|
27.0
|
1.0
|
CG2
|
A:ILE355
|
3.9
|
22.5
|
1.0
|
H
|
A:GLY357
|
4.0
|
28.3
|
1.0
|
HE1
|
A:HIS442
|
4.0
|
25.6
|
1.0
|
CA
|
A:GLY356
|
4.1
|
21.8
|
1.0
|
CE1
|
A:HIS442
|
4.1
|
21.3
|
1.0
|
N
|
A:GLY356
|
4.1
|
20.2
|
1.0
|
HZ
|
A:PHE381
|
4.2
|
28.7
|
1.0
|
S1A
|
A:ICS502
|
4.3
|
22.0
|
1.0
|
HG23
|
A:ILE355
|
4.3
|
27.0
|
1.0
|
S4A
|
A:ICS502
|
4.3
|
19.8
|
1.0
|
S2B
|
A:ICS502
|
4.4
|
16.1
|
1.0
|
S5A
|
A:ICS502
|
4.5
|
17.3
|
1.0
|
HA
|
A:HIS442
|
4.6
|
23.2
|
1.0
|
HB2
|
A:ARG359
|
4.7
|
21.9
|
1.0
|
N
|
A:GLY357
|
4.7
|
23.6
|
1.0
|
CD
|
A:ARG359
|
4.7
|
21.6
|
1.0
|
HA2
|
A:GLY356
|
4.8
|
26.2
|
1.0
|
H
|
A:ARG359
|
4.8
|
30.2
|
1.0
|
CG
|
A:HIS442
|
4.8
|
18.0
|
1.0
|
HG3
|
A:ARG359
|
4.8
|
24.1
|
1.0
|
O7
|
A:HCA501
|
4.8
|
18.1
|
1.0
|
H
|
A:LEU358
|
4.8
|
29.4
|
1.0
|
O6
|
A:HCA501
|
4.9
|
20.5
|
1.0
|
HH11
|
A:ARG359
|
4.9
|
28.7
|
1.0
|
C
|
A:GLY356
|
5.0
|
20.5
|
1.0
|
FE1
|
A:ICS502
|
5.0
|
24.2
|
1.0
|
|
Iron binding site 6 out
of 32 in 8e3v
Go back to
Iron Binding Sites List in 8e3v
Iron binding site 6 out
of 32 in the Cobalt-Reconstituted Nitrogenase Mofep Mutant S188A From Azotobacter Vinelandii After Ids Oxidation
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of Cobalt-Reconstituted Nitrogenase Mofep Mutant S188A From Azotobacter Vinelandii After Ids Oxidation within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe502
b:21.4
occ:1.00
|
FE6
|
A:ICS502
|
0.0
|
21.4
|
1.0
|
CX
|
A:ICS502
|
2.0
|
16.1
|
1.0
|
S2B
|
A:ICS502
|
2.2
|
16.1
|
1.0
|
S1B
|
A:ICS502
|
2.2
|
15.8
|
1.0
|
S3B
|
A:ICS502
|
2.2
|
17.2
|
1.0
|
FE2
|
A:ICS502
|
2.6
|
22.6
|
1.0
|
FE7
|
A:ICS502
|
2.6
|
20.7
|
1.0
|
FE5
|
A:ICS502
|
2.6
|
21.4
|
1.0
|
MO1
|
A:ICS502
|
2.7
|
17.9
|
1.0
|
HZ
|
A:PHE381
|
3.2
|
28.7
|
1.0
|
HG11
|
A:VAL70
|
3.6
|
29.4
|
1.0
|
FE3
|
A:ICS502
|
3.7
|
21.1
|
1.0
|
FE4
|
A:ICS502
|
3.7
|
22.6
|
1.0
|
S4B
|
A:ICS502
|
3.8
|
18.6
|
1.0
|
O7
|
A:HCA501
|
3.8
|
18.1
|
1.0
|
HH21
|
A:ARG96
|
3.9
|
32.3
|
1.0
|
CZ
|
A:PHE381
|
4.1
|
23.9
|
1.0
|
HA3
|
A:GLY356
|
4.2
|
26.2
|
1.0
|
HG12
|
A:VAL70
|
4.2
|
29.4
|
1.0
|
S2A
|
A:ICS502
|
4.2
|
21.8
|
1.0
|
HE2
|
A:PHE381
|
4.2
|
24.2
|
1.0
|
S1A
|
A:ICS502
|
4.3
|
22.0
|
1.0
|
CG1
|
A:VAL70
|
4.3
|
24.5
|
1.0
|
O2
|
A:HCA501
|
4.4
|
22.7
|
1.0
|
S5A
|
A:ICS502
|
4.4
|
17.3
|
1.0
|
HE
|
A:ARG96
|
4.5
|
27.8
|
1.0
|
S3A
|
A:ICS502
|
4.5
|
19.9
|
1.0
|
CE2
|
A:PHE381
|
4.6
|
20.1
|
1.0
|
HE2
|
A:HIS195
|
4.7
|
31.8
|
1.0
|
O6
|
A:HCA501
|
4.7
|
20.5
|
1.0
|
H22
|
A:HCA501
|
4.7
|
28.1
|
1.0
|
HE1
|
A:HIS442
|
4.7
|
25.6
|
1.0
|
HB
|
A:VAL70
|
4.8
|
30.2
|
1.0
|
ND1
|
A:HIS442
|
4.8
|
18.3
|
1.0
|
NH2
|
A:ARG96
|
4.8
|
26.9
|
1.0
|
C3
|
A:HCA501
|
4.9
|
19.9
|
1.0
|
FE1
|
A:ICS502
|
5.0
|
24.2
|
1.0
|
|
Iron binding site 7 out
of 32 in 8e3v
Go back to
Iron Binding Sites List in 8e3v
Iron binding site 7 out
of 32 in the Cobalt-Reconstituted Nitrogenase Mofep Mutant S188A From Azotobacter Vinelandii After Ids Oxidation
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 7 of Cobalt-Reconstituted Nitrogenase Mofep Mutant S188A From Azotobacter Vinelandii After Ids Oxidation within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe502
b:20.7
occ:1.00
|
FE7
|
A:ICS502
|
0.0
|
20.7
|
1.0
|
CX
|
A:ICS502
|
2.0
|
16.1
|
1.0
|
S4B
|
A:ICS502
|
2.2
|
18.6
|
1.0
|
S5A
|
A:ICS502
|
2.2
|
17.3
|
1.0
|
S3B
|
A:ICS502
|
2.2
|
17.2
|
1.0
|
FE6
|
A:ICS502
|
2.6
|
21.4
|
1.0
|
FE3
|
A:ICS502
|
2.6
|
21.1
|
1.0
|
FE5
|
A:ICS502
|
2.6
|
21.4
|
1.0
|
MO1
|
A:ICS502
|
2.7
|
17.9
|
1.0
|
HH21
|
A:ARG96
|
2.9
|
32.3
|
1.0
|
HE
|
A:ARG96
|
3.2
|
27.8
|
1.0
|
O
|
A:HOH737
|
3.4
|
22.1
|
1.0
|
FE2
|
A:ICS502
|
3.7
|
22.6
|
1.0
|
FE4
|
A:ICS502
|
3.7
|
22.6
|
1.0
|
S1B
|
A:ICS502
|
3.8
|
15.8
|
1.0
|
O6
|
A:HCA501
|
3.9
|
20.5
|
1.0
|
NH2
|
A:ARG96
|
3.9
|
26.9
|
1.0
|
NE
|
A:ARG96
|
4.1
|
23.2
|
1.0
|
S2A
|
A:ICS502
|
4.3
|
21.8
|
1.0
|
S4A
|
A:ICS502
|
4.3
|
19.8
|
1.0
|
S2B
|
A:ICS502
|
4.4
|
16.1
|
1.0
|
CZ
|
A:ARG96
|
4.5
|
23.6
|
1.0
|
S3A
|
A:ICS502
|
4.5
|
19.9
|
1.0
|
HG13
|
A:ILE231
|
4.6
|
24.9
|
1.0
|
HH22
|
A:ARG96
|
4.6
|
32.3
|
1.0
|
ND1
|
A:HIS442
|
4.7
|
18.3
|
1.0
|
C7
|
A:HCA501
|
4.7
|
20.0
|
1.0
|
HB3
|
A:HIS442
|
4.7
|
22.8
|
1.0
|
O7
|
A:HCA501
|
4.7
|
18.1
|
1.0
|
HG3
|
A:ARG96
|
4.7
|
30.3
|
1.0
|
HA
|
A:HIS442
|
4.8
|
23.2
|
1.0
|
HD11
|
A:ILE231
|
4.8
|
28.6
|
1.0
|
HD2
|
A:ARG359
|
4.8
|
25.9
|
1.0
|
HG12
|
A:VAL70
|
4.9
|
29.4
|
1.0
|
CZ
|
A:ARG359
|
4.9
|
24.0
|
1.0
|
NH1
|
A:ARG359
|
4.9
|
23.9
|
1.0
|
FE1
|
A:ICS502
|
5.0
|
24.2
|
1.0
|
|
Iron binding site 8 out
of 32 in 8e3v
Go back to
Iron Binding Sites List in 8e3v
Iron binding site 8 out
of 32 in the Cobalt-Reconstituted Nitrogenase Mofep Mutant S188A From Azotobacter Vinelandii After Ids Oxidation
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 8 of Cobalt-Reconstituted Nitrogenase Mofep Mutant S188A From Azotobacter Vinelandii After Ids Oxidation within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe601
b:23.2
occ:0.72
|
O
|
D:ARG108
|
2.2
|
16.7
|
1.0
|
OD2
|
B:ASP357
|
2.3
|
28.1
|
1.0
|
OE2
|
D:GLU109
|
2.3
|
23.4
|
1.0
|
OD2
|
B:ASP353
|
2.4
|
22.9
|
1.0
|
O
|
B:HOH806
|
2.4
|
21.6
|
1.0
|
O
|
D:HOH824
|
2.6
|
17.8
|
1.0
|
CG
|
B:ASP357
|
3.0
|
23.1
|
1.0
|
OD1
|
B:ASP357
|
3.1
|
25.9
|
1.0
|
CG
|
B:ASP353
|
3.2
|
24.3
|
1.0
|
HZ3
|
C:LYS433
|
3.3
|
25.3
|
1.0
|
C
|
D:ARG108
|
3.4
|
15.5
|
1.0
|
OD1
|
B:ASP353
|
3.4
|
22.4
|
1.0
|
HG2
|
D:GLU109
|
3.4
|
27.1
|
1.0
|
CD
|
D:GLU109
|
3.4
|
20.6
|
1.0
|
HB3
|
D:ARG108
|
3.5
|
24.4
|
1.0
|
HB2
|
D:ARG108
|
3.7
|
24.4
|
1.0
|
HA
|
D:GLU109
|
3.8
|
24.6
|
1.0
|
O
|
B:HOH725
|
3.8
|
23.7
|
1.0
|
CG
|
D:GLU109
|
3.9
|
22.6
|
1.0
|
CB
|
D:ARG108
|
4.0
|
20.3
|
1.0
|
HD1
|
C:PHE429
|
4.1
|
27.6
|
1.0
|
HE2
|
C:LYS433
|
4.2
|
30.8
|
1.0
|
N
|
D:GLU109
|
4.3
|
18.3
|
1.0
|
CA
|
D:ARG108
|
4.3
|
19.9
|
1.0
|
NZ
|
C:LYS433
|
4.3
|
21.1
|
1.0
|
CD1
|
C:PHE429
|
4.4
|
23.0
|
1.0
|
HB3
|
C:PHE429
|
4.4
|
26.8
|
1.0
|
CA
|
D:GLU109
|
4.4
|
20.5
|
1.0
|
CB
|
B:ASP357
|
4.4
|
17.5
|
1.0
|
O
|
D:PHE107
|
4.4
|
16.4
|
1.0
|
O
|
B:ASP353
|
4.4
|
15.5
|
1.0
|
OE1
|
D:GLU109
|
4.5
|
24.2
|
1.0
|
HE1
|
D:HIS478
|
4.6
|
19.0
|
1.0
|
CB
|
B:ASP353
|
4.6
|
20.7
|
1.0
|
HG3
|
D:GLU109
|
4.7
|
27.1
|
1.0
|
HB2
|
B:ASP357
|
4.7
|
21.0
|
1.0
|
O
|
D:HOH846
|
4.7
|
18.9
|
1.0
|
CB
|
D:GLU109
|
4.8
|
22.0
|
1.0
|
CE
|
C:LYS433
|
4.8
|
25.7
|
1.0
|
O
|
D:HOH998
|
4.8
|
23.2
|
1.0
|
HB3
|
B:ASP357
|
4.8
|
21.0
|
1.0
|
HB3
|
B:ASP353
|
4.8
|
24.8
|
1.0
|
HZ1
|
C:LYS433
|
4.8
|
25.3
|
1.0
|
CE1
|
C:PHE429
|
4.8
|
22.1
|
1.0
|
C
|
B:ASP353
|
4.8
|
20.0
|
1.0
|
HE1
|
C:PHE429
|
4.8
|
26.6
|
1.0
|
HZ2
|
C:LYS433
|
4.9
|
25.3
|
1.0
|
HA
|
B:MET354
|
4.9
|
21.5
|
1.0
|
HA
|
D:ARG108
|
4.9
|
23.9
|
1.0
|
CG
|
C:PHE429
|
4.9
|
23.5
|
1.0
|
HE22
|
C:GLN432
|
5.0
|
28.7
|
1.0
|
|
Iron binding site 9 out
of 32 in 8e3v
Go back to
Iron Binding Sites List in 8e3v
Iron binding site 9 out
of 32 in the Cobalt-Reconstituted Nitrogenase Mofep Mutant S188A From Azotobacter Vinelandii After Ids Oxidation
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 9 of Cobalt-Reconstituted Nitrogenase Mofep Mutant S188A From Azotobacter Vinelandii After Ids Oxidation within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe602
b:21.4
occ:0.67
|
FE1
|
B:CLF602
|
0.0
|
21.4
|
0.7
|
S3A
|
B:CLF602
|
2.3
|
20.1
|
1.0
|
S2A
|
B:CLF602
|
2.3
|
19.5
|
1.0
|
S1
|
B:CLF602
|
2.5
|
25.0
|
1.0
|
FE2
|
B:CLF602
|
2.5
|
22.3
|
0.9
|
FE4
|
B:CLF602
|
2.6
|
21.9
|
1.0
|
SG
|
B:CYS95
|
2.6
|
21.2
|
1.0
|
FE3
|
B:CLF602
|
2.7
|
22.0
|
0.9
|
FE8
|
B:CLF602
|
2.9
|
22.1
|
1.0
|
H
|
B:CYS95
|
3.0
|
24.5
|
1.0
|
N
|
B:CYS95
|
3.2
|
20.4
|
1.0
|
HA
|
B:CYS95
|
3.2
|
25.2
|
1.0
|
CA
|
B:CYS95
|
3.5
|
21.0
|
1.0
|
HG
|
B:SER92
|
3.5
|
42.9
|
1.0
|
CB
|
B:CYS95
|
3.6
|
21.3
|
1.0
|
S4A
|
B:CLF602
|
3.8
|
21.1
|
1.0
|
C
|
B:GLY94
|
3.8
|
22.0
|
1.0
|
FE5
|
B:CLF602
|
3.8
|
21.6
|
0.9
|
HA3
|
B:GLY94
|
3.9
|
25.2
|
1.0
|
S4B
|
B:CLF602
|
3.9
|
20.0
|
1.0
|
HB3
|
B:CYS95
|
4.0
|
25.6
|
1.0
|
OG
|
B:SER92
|
4.3
|
35.7
|
1.0
|
CA
|
B:GLY94
|
4.3
|
21.0
|
1.0
|
HB2
|
B:CYS95
|
4.4
|
25.6
|
1.0
|
HD2
|
B:TYR98
|
4.4
|
21.1
|
1.0
|
O
|
B:HOH864
|
4.5
|
21.3
|
1.0
|
SG
|
A:CYS88
|
4.5
|
18.4
|
1.0
|
O
|
B:GLY94
|
4.5
|
21.1
|
1.0
|
H
|
B:GLY94
|
4.6
|
27.8
|
1.0
|
HA3
|
A:GLY185
|
4.7
|
27.3
|
1.0
|
N
|
B:GLY94
|
4.7
|
23.1
|
1.0
|
HB3
|
A:CYS62
|
4.7
|
31.0
|
1.0
|
HB
|
B:THR152
|
4.8
|
23.9
|
1.0
|
SG
|
A:CYS154
|
4.8
|
22.1
|
1.0
|
O
|
B:SER92
|
4.9
|
20.1
|
1.0
|
SG
|
A:CYS62
|
4.9
|
22.7
|
1.0
|
HB2
|
B:SER92
|
5.0
|
30.6
|
1.0
|
FE6
|
B:CLF602
|
5.0
|
21.9
|
0.9
|
C
|
B:CYS95
|
5.0
|
19.9
|
1.0
|
|
Iron binding site 10 out
of 32 in 8e3v
Go back to
Iron Binding Sites List in 8e3v
Iron binding site 10 out
of 32 in the Cobalt-Reconstituted Nitrogenase Mofep Mutant S188A From Azotobacter Vinelandii After Ids Oxidation
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 10 of Cobalt-Reconstituted Nitrogenase Mofep Mutant S188A From Azotobacter Vinelandii After Ids Oxidation within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe602
b:22.3
occ:0.90
|
FE2
|
B:CLF602
|
0.0
|
22.3
|
0.9
|
S2A
|
B:CLF602
|
2.3
|
19.5
|
1.0
|
S4A
|
B:CLF602
|
2.3
|
21.1
|
1.0
|
S1
|
B:CLF602
|
2.4
|
25.0
|
1.0
|
FE1
|
B:CLF602
|
2.5
|
21.4
|
0.7
|
SG
|
A:CYS154
|
2.6
|
22.1
|
1.0
|
FE4
|
B:CLF602
|
2.6
|
21.9
|
1.0
|
FE3
|
B:CLF602
|
2.8
|
22.0
|
0.9
|
HA3
|
A:GLY185
|
3.0
|
27.3
|
1.0
|
HG
|
B:SER92
|
3.1
|
42.9
|
1.0
|
H
|
A:CYS154
|
3.2
|
24.8
|
1.0
|
HB2
|
A:CYS154
|
3.2
|
20.6
|
1.0
|
CB
|
A:CYS154
|
3.5
|
17.2
|
1.0
|
H
|
A:GLY185
|
3.5
|
31.2
|
1.0
|
O
|
B:HOH864
|
3.7
|
21.3
|
1.0
|
S3A
|
B:CLF602
|
3.8
|
20.1
|
1.0
|
OG
|
B:SER92
|
3.8
|
35.7
|
1.0
|
CA
|
A:GLY185
|
3.9
|
22.8
|
1.0
|
N
|
A:CYS154
|
4.0
|
20.6
|
1.0
|
N
|
A:GLY185
|
4.1
|
26.0
|
1.0
|
CA
|
A:CYS154
|
4.3
|
21.4
|
1.0
|
HB3
|
A:CYS154
|
4.3
|
20.6
|
1.0
|
SG
|
B:CYS95
|
4.3
|
21.2
|
1.0
|
FE8
|
B:CLF602
|
4.3
|
22.1
|
1.0
|
HB3
|
A:GLU153
|
4.5
|
24.9
|
1.0
|
HA
|
A:CYS154
|
4.5
|
25.6
|
1.0
|
HA2
|
A:GLY185
|
4.5
|
27.3
|
1.0
|
SG
|
A:CYS88
|
4.6
|
18.4
|
1.0
|
HB2
|
B:SER92
|
4.6
|
30.6
|
1.0
|
FE5
|
B:CLF602
|
4.7
|
21.6
|
0.9
|
C
|
A:GLY185
|
4.7
|
23.0
|
1.0
|
HA
|
A:GLU153
|
4.8
|
25.5
|
1.0
|
CB
|
B:SER92
|
4.8
|
25.5
|
1.0
|
H
|
A:PHE186
|
4.9
|
32.0
|
1.0
|
HB2
|
A:CYS62
|
4.9
|
31.0
|
1.0
|
H
|
B:CYS95
|
5.0
|
24.5
|
1.0
|
HB3
|
A:TYR64
|
5.0
|
25.7
|
1.0
|
|
Reference:
H.L.Rutledge,
M.J.Field,
J.Rittle,
M.T.Green,
F.A.Tezcan.
Role of Serine Coordination in the Structural and Functional Protection of the Nitrogenase P-Cluster. J.Am.Chem.Soc. V. 144 22101 2022.
ISSN: ESSN 1520-5126
PubMed: 36445204
DOI: 10.1021/JACS.2C09480
Page generated: Sat Aug 10 00:54:08 2024
|