Iron in PDB 8e5f: Cryo-Em of P. Calidifontis Cytochrome Filament

The binding sites of Iron atom in the Cryo-Em of P. Calidifontis Cytochrome Filament (pdb code 8e5f). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the Cryo-Em of P. Calidifontis Cytochrome Filament, PDB code: 8e5f:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in the Cryo-Em of P. Calidifontis Cytochrome Filament


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Cryo-Em of P. Calidifontis Cytochrome Filament within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe501 b:55.6 occ:1.00 FE A:HEC501 0.0 55.6 1.0 NB A:HEC501 2.0 55.6 1.0 NC A:HEC501 2.0 55.6 1.0 NA A:HEC501 2.0 55.6 1.0 ND A:HEC501 2.1 55.6 1.0 NE2 A:HIS38 2.1 55.1 1.0 NE2 A:HIS120 2.1 56.1 1.0 CD2 A:HIS38 3.0 55.1 1.0 C4B A:HEC501 3.0 55.6 1.0 CD2 A:HIS120 3.0 56.1 1.0 C1C A:HEC501 3.1 55.6 1.0 CE1 A:HIS38 3.1 55.1 1.0 C1B A:HEC501 3.1 55.6 1.0 CE1 A:HIS120 3.1 56.1 1.0 C1D A:HEC501 3.1 55.6 1.0 C4C A:HEC501 3.1 55.6 1.0 C4A A:HEC501 3.1 55.6 1.0 C1A A:HEC501 3.1 55.6 1.0 C4D A:HEC501 3.1 55.6 1.0 CHC A:HEC501 3.4 55.6 1.0 CHD A:HEC501 3.4 55.6 1.0 CHB A:HEC501 3.4 55.6 1.0 CHA A:HEC501 3.4 55.6 1.0 ND1 A:HIS120 4.2 56.1 1.0 ND1 A:HIS38 4.2 55.1 1.0 CG A:HIS120 4.2 56.1 1.0 CG A:HIS38 4.2 55.1 1.0 C3B A:HEC501 4.3 55.6 1.0 C2B A:HEC501 4.3 55.6 1.0 C2C A:HEC501 4.3 55.6 1.0 C2D A:HEC501 4.3 55.6 1.0 C3C A:HEC501 4.3 55.6 1.0 C3A A:HEC501 4.3 55.6 1.0 C2A A:HEC501 4.3 55.6 1.0 C3D A:HEC501 4.3 55.6 1.0

Iron binding site 2 out of 4 in the Cryo-Em of P. Calidifontis Cytochrome Filament


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Cryo-Em of P. Calidifontis Cytochrome Filament within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe502 b:62.2 occ:1.00 FE A:HEC502 0.0 62.2 1.0 NE2 A:HIS30 2.0 61.3 1.0 NE2 A:HIS89 2.0 61.7 1.0 ND A:HEC502 2.0 62.2 1.0 NA A:HEC502 2.0 62.2 1.0 NC A:HEC502 2.0 62.2 1.0 NB A:HEC502 2.1 62.2 1.0 CD2 A:HIS89 2.9 61.7 1.0 CD2 A:HIS30 2.9 61.3 1.0 CE1 A:HIS30 3.1 61.3 1.0 C1D A:HEC502 3.1 62.2 1.0 C4A A:HEC502 3.1 62.2 1.0 C1B A:HEC502 3.1 62.2 1.0 C4C A:HEC502 3.1 62.2 1.0 C1A A:HEC502 3.1 62.2 1.0 C1C A:HEC502 3.1 62.2 1.0 C4D A:HEC502 3.1 62.2 1.0 CE1 A:HIS89 3.1 61.7 1.0 C4B A:HEC502 3.1 62.2 1.0 CHD A:HEC502 3.4 62.2 1.0 CHB A:HEC502 3.4 62.2 1.0 CHA A:HEC502 3.4 62.2 1.0 CHC A:HEC502 3.4 62.2 1.0 CG A:HIS30 4.1 61.3 1.0 CG A:HIS89 4.1 61.7 1.0 ND1 A:HIS30 4.1 61.3 1.0 ND1 A:HIS89 4.2 61.7 1.0 C2D A:HEC502 4.3 62.2 1.0 C3A A:HEC502 4.3 62.2 1.0 C2C A:HEC502 4.3 62.2 1.0 C2A A:HEC502 4.3 62.2 1.0 C3D A:HEC502 4.3 62.2 1.0 C2B A:HEC502 4.3 62.2 1.0 C3C A:HEC502 4.3 62.2 1.0 C3B A:HEC502 4.3 62.2 1.0 CE A:MET267 4.7 58.8 1.0

Iron binding site 3 out of 4 in the Cryo-Em of P. Calidifontis Cytochrome Filament


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Cryo-Em of P. Calidifontis Cytochrome Filament within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe503 b:59.3 occ:1.00 FE A:HEC503 0.0 59.3 1.0 ND A:HEC503 2.0 59.3 1.0 NB A:HEC503 2.0 59.3 1.0 NE2 A:HIS116 2.0 54.0 1.0 NC A:HEC503 2.0 59.3 1.0 NA A:HEC503 2.1 59.3 1.0 CD2 A:HIS116 3.0 54.0 1.0 C1B A:HEC503 3.0 59.3 1.0 C1D A:HEC503 3.0 59.3 1.0 C4A A:HEC503 3.1 59.3 1.0 CE1 A:HIS116 3.1 54.0 1.0 C4D A:HEC503 3.1 59.3 1.0 C1C A:HEC503 3.1 59.3 1.0 C4B A:HEC503 3.1 59.3 1.0 C4C A:HEC503 3.1 59.3 1.0 C1A A:HEC503 3.1 59.3 1.0 CHB A:HEC503 3.4 59.3 1.0 CHD A:HEC503 3.4 59.3 1.0 CHC A:HEC503 3.4 59.3 1.0 CHA A:HEC503 3.4 59.3 1.0 CG A:HIS116 4.1 54.0 1.0 ND1 A:HIS116 4.1 54.0 1.0 C2B A:HEC503 4.3 59.3 1.0 C2D A:HEC503 4.3 59.3 1.0 C3D A:HEC503 4.3 59.3 1.0 C2C A:HEC503 4.3 59.3 1.0 C3A A:HEC503 4.3 59.3 1.0 C3B A:HEC503 4.3 59.3 1.0 C3C A:HEC503 4.3 59.3 1.0 C2A A:HEC503 4.3 59.3 1.0

Iron binding site 4 out of 4 in the Cryo-Em of P. Calidifontis Cytochrome Filament


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Cryo-Em of P. Calidifontis Cytochrome Filament within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe504 b:55.5 occ:1.00 FE A:HEC504 0.0 55.5 1.0 NC A:HEC504 2.0 55.5 1.0 NE2 A:HIS308 2.0 57.7 1.0 ND A:HEC504 2.0 55.5 1.0 NB A:HEC504 2.1 55.5 1.0 NE2 A:HIS104 2.1 56.4 1.0 NA A:HEC504 2.1 55.5 1.0 CD2 A:HIS308 2.9 57.7 1.0 CE1 A:HIS308 3.0 57.7 1.0 C1C A:HEC504 3.0 55.5 1.0 CD2 A:HIS104 3.0 56.4 1.0 CE1 A:HIS104 3.0 56.4 1.0 C4B A:HEC504 3.1 55.5 1.0 C4D A:HEC504 3.1 55.5 1.0 C1D A:HEC504 3.1 55.5 1.0 C1A A:HEC504 3.1 55.5 1.0 C4C A:HEC504 3.1 55.5 1.0 C4A A:HEC504 3.1 55.5 1.0 C1B A:HEC504 3.1 55.5 1.0 CHC A:HEC504 3.4 55.5 1.0 CHA A:HEC504 3.4 55.5 1.0 CHD A:HEC504 3.5 55.5 1.0 CHB A:HEC504 3.5 55.5 1.0 CG A:HIS308 4.0 57.7 1.0 ND1 A:HIS308 4.1 57.7 1.0 ND1 A:HIS104 4.1 56.4 1.0 CG A:HIS104 4.2 56.4 1.0 C2C A:HEC504 4.2 55.5 1.0 C3D A:HEC504 4.3 55.5 1.0 C2D A:HEC504 4.3 55.5 1.0 C3C A:HEC504 4.3 55.5 1.0 C2A A:HEC504 4.3 55.5 1.0 C3B A:HEC504 4.3 55.5 1.0 C3A A:HEC504 4.3 55.5 1.0 C2B A:HEC504 4.3 55.5 1.0

F.Wang, V.Cvirkaite-Krupovic, M.Krupovic, E.H.Egelman. Cryo-Em of P. Calidifontis Cytochrome Filament To Be Published.