Iron in PDB 8e5g: Cryo-Em of A. Veneficus Cytochrome Filament

The binding sites of Iron atom in the Cryo-Em of A. Veneficus Cytochrome Filament (pdb code 8e5g). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the Cryo-Em of A. Veneficus Cytochrome Filament, PDB code: 8e5g:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in the Cryo-Em of A. Veneficus Cytochrome Filament


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Cryo-Em of A. Veneficus Cytochrome Filament within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe301 b:100.7 occ:1.00 FE A:HEC301 0.0 100.7 1.0 NC A:HEC301 2.0 100.7 1.0 NA A:HEC301 2.0 100.7 1.0 NE2 A:HIS50 2.0 105.3 1.0 NB A:HEC301 2.1 100.7 1.0 ND A:HEC301 2.1 100.7 1.0 CD2 A:HIS50 2.9 105.3 1.0 C4C A:HEC301 3.0 100.7 1.0 C1D A:HEC301 3.1 100.7 1.0 C4A A:HEC301 3.1 100.7 1.0 C4D A:HEC301 3.1 100.7 1.0 C1A A:HEC301 3.1 100.7 1.0 C1B A:HEC301 3.1 100.7 1.0 C1C A:HEC301 3.1 100.7 1.0 CE1 A:HIS50 3.1 105.3 1.0 C4B A:HEC301 3.1 100.7 1.0 CHD A:HEC301 3.4 100.7 1.0 CHA A:HEC301 3.4 100.7 1.0 CHB A:HEC301 3.4 100.7 1.0 CHC A:HEC301 3.5 100.7 1.0 CG A:HIS50 4.1 105.3 1.0 ND1 A:HIS50 4.1 105.3 1.0 C3C A:HEC301 4.3 100.7 1.0 C3A A:HEC301 4.3 100.7 1.0 C2C A:HEC301 4.3 100.7 1.0 C2A A:HEC301 4.3 100.7 1.0 C2B A:HEC301 4.3 100.7 1.0 C3D A:HEC301 4.3 100.7 1.0 C2D A:HEC301 4.3 100.7 1.0 C3B A:HEC301 4.3 100.7 1.0

Iron binding site 2 out of 4 in the Cryo-Em of A. Veneficus Cytochrome Filament


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Cryo-Em of A. Veneficus Cytochrome Filament within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe302 b:99.3 occ:1.00 FE A:HEC302 0.0 99.3 1.0 NA A:HEC302 2.0 99.3 1.0 NE2 A:HIS85 2.0 97.4 1.0 ND A:HEC302 2.0 99.3 1.0 NB A:HEC302 2.1 99.3 1.0 NC A:HEC302 2.1 99.3 1.0 CD2 A:HIS85 3.0 97.4 1.0 CE1 A:HIS85 3.0 97.4 1.0 C4D A:HEC302 3.0 99.3 1.0 C1C A:HEC302 3.0 99.3 1.0 C1A A:HEC302 3.1 99.3 1.0 C1D A:HEC302 3.1 99.3 1.0 C4B A:HEC302 3.1 99.3 1.0 C4A A:HEC302 3.1 99.3 1.0 C1B A:HEC302 3.1 99.3 1.0 C4C A:HEC302 3.1 99.3 1.0 CHA A:HEC302 3.4 99.3 1.0 CHC A:HEC302 3.4 99.3 1.0 CHD A:HEC302 3.4 99.3 1.0 CHB A:HEC302 3.5 99.3 1.0 ND1 A:HIS85 4.1 97.4 1.0 CG A:HIS85 4.1 97.4 1.0 C2C A:HEC302 4.3 99.3 1.0 C2A A:HEC302 4.3 99.3 1.0 C3D A:HEC302 4.3 99.3 1.0 C3A A:HEC302 4.3 99.3 1.0 C3B A:HEC302 4.3 99.3 1.0 C2B A:HEC302 4.3 99.3 1.0 C2D A:HEC302 4.3 99.3 1.0 C3C A:HEC302 4.3 99.3 1.0

Iron binding site 3 out of 4 in the Cryo-Em of A. Veneficus Cytochrome Filament


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Cryo-Em of A. Veneficus Cytochrome Filament within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe303 b:100.2 occ:1.00 FE A:HEC303 0.0 100.2 1.0 NE2 A:HIS119 2.0 103.0 1.0 NB A:HEC303 2.0 100.2 1.0 NC A:HEC303 2.0 100.2 1.0 NA A:HEC303 2.0 100.2 1.0 ND A:HEC303 2.1 100.2 1.0 NE2 A:HIS64 2.1 103.4 1.0 CD2 A:HIS119 3.0 103.0 1.0 CE1 A:HIS64 3.0 103.4 1.0 CE1 A:HIS119 3.0 103.0 1.0 C4B A:HEC303 3.0 100.2 1.0 C1C A:HEC303 3.0 100.2 1.0 C1A A:HEC303 3.1 100.2 1.0 C4D A:HEC303 3.1 100.2 1.0 C1B A:HEC303 3.1 100.2 1.0 C4C A:HEC303 3.1 100.2 1.0 C4A A:HEC303 3.1 100.2 1.0 C1D A:HEC303 3.1 100.2 1.0 CD2 A:HIS64 3.2 103.4 1.0 CHC A:HEC303 3.4 100.2 1.0 CHA A:HEC303 3.4 100.2 1.0 CHB A:HEC303 3.5 100.2 1.0 CHD A:HEC303 3.5 100.2 1.0 ND1 A:HIS119 4.1 103.0 1.0 CG A:HIS119 4.1 103.0 1.0 ND1 A:HIS64 4.2 103.4 1.0 CG A:HIS64 4.3 103.4 1.0 C3B A:HEC303 4.3 100.2 1.0 C2C A:HEC303 4.3 100.2 1.0 C2B A:HEC303 4.3 100.2 1.0 C3C A:HEC303 4.3 100.2 1.0 C2A A:HEC303 4.3 100.2 1.0 C3A A:HEC303 4.3 100.2 1.0 C3D A:HEC303 4.3 100.2 1.0 C2D A:HEC303 4.3 100.2 1.0

Iron binding site 4 out of 4 in the Cryo-Em of A. Veneficus Cytochrome Filament


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Cryo-Em of A. Veneficus Cytochrome Filament within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe304 b:91.7 occ:1.00 FE A:HEC304 0.0 91.7 1.0 NC A:HEC304 2.0 91.7 1.0 NA A:HEC304 2.0 91.7 1.0 NE2 A:HIS189 2.0 89.7 1.0 NB A:HEC304 2.1 91.7 1.0 ND A:HEC304 2.1 91.7 1.0 CE1 A:HIS189 3.0 89.7 1.0 C4C A:HEC304 3.0 91.7 1.0 C4A A:HEC304 3.0 91.7 1.0 C1C A:HEC304 3.0 91.7 1.0 C1B A:HEC304 3.0 91.7 1.0 C1D A:HEC304 3.1 91.7 1.0 CD2 A:HIS189 3.1 89.7 1.0 C1A A:HEC304 3.1 91.7 1.0 C4B A:HEC304 3.1 91.7 1.0 C4D A:HEC304 3.1 91.7 1.0 CHD A:HEC304 3.4 91.7 1.0 CHB A:HEC304 3.4 91.7 1.0 CHC A:HEC304 3.4 91.7 1.0 CHA A:HEC304 3.5 91.7 1.0 ND1 A:HIS189 4.1 89.7 1.0 CG A:HIS189 4.2 89.7 1.0 C3C A:HEC304 4.2 91.7 1.0 C2C A:HEC304 4.3 91.7 1.0 C3A A:HEC304 4.3 91.7 1.0 C2B A:HEC304 4.3 91.7 1.0 C2A A:HEC304 4.3 91.7 1.0 C2D A:HEC304 4.3 91.7 1.0 C3B A:HEC304 4.3 91.7 1.0 C3D A:HEC304 4.3 91.7 1.0

F.Wang, D.P.Baquero, M.Krupovic, E.H.Egelman. Cryo-Em of A. Veneficus Cytochrome Filament To Be Published.