Iron in PDB 8el9: Cryo-Em Structure of Human Catalase

All present enzymatic activity of Cryo-Em Structure of Human Catalase:
1.11.1.6;

The binding sites of Iron atom in the Cryo-Em Structure of Human Catalase (pdb code 8el9). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the Cryo-Em Structure of Human Catalase, PDB code: 8el9:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in the Cryo-Em Structure of Human Catalase


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Cryo-Em Structure of Human Catalase within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe601 b:11.9 occ:1.00 FE A:HEM601 0.0 11.9 1.0 OH A:TYR358 1.9 11.1 1.0 NB A:HEM601 2.0 11.9 1.0 NC A:HEM601 2.1 11.9 1.0 NA A:HEM601 2.1 11.9 1.0 ND A:HEM601 2.1 11.9 1.0 C1C A:HEM601 3.0 11.9 1.0 C4C A:HEM601 3.0 11.9 1.0 C4B A:HEM601 3.0 11.9 1.0 C1B A:HEM601 3.1 11.9 1.0 C4A A:HEM601 3.1 11.9 1.0 CZ A:TYR358 3.1 11.1 1.0 C1D A:HEM601 3.1 11.9 1.0 C1A A:HEM601 3.1 11.9 1.0 C4D A:HEM601 3.1 11.9 1.0 CHC A:HEM601 3.4 11.9 1.0 CHB A:HEM601 3.4 11.9 1.0 CHD A:HEM601 3.4 11.9 1.0 CHA A:HEM601 3.4 11.9 1.0 CE1 A:TYR358 3.9 11.1 1.0 CE2 A:TYR358 3.9 11.1 1.0 NE A:ARG354 4.0 12.0 1.0 NH2 A:ARG354 4.1 12.0 1.0 C2C A:HEM601 4.2 11.9 1.0 C3C A:HEM601 4.2 11.9 1.0 O A:HOH801 4.3 12.1 1.0 C2B A:HEM601 4.3 11.9 1.0 C3B A:HEM601 4.3 11.9 1.0 C3A A:HEM601 4.3 11.9 1.0 C2A A:HEM601 4.3 11.9 1.0 C2D A:HEM601 4.3 11.9 1.0 C3D A:HEM601 4.3 11.9 1.0 CZ A:PHE161 4.5 11.7 1.0 CZ A:ARG354 4.5 12.0 1.0 CG2 A:VAL74 4.7 12.2 1.0 NE2 A:HIS75 4.9 12.2 1.0 CD2 A:HIS75 4.9 12.2 1.0 CE1 A:PHE161 5.0 11.7 1.0

Iron binding site 2 out of 4 in the Cryo-Em Structure of Human Catalase


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Cryo-Em Structure of Human Catalase within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe601 b:11.9 occ:1.00 FE B:HEM601 0.0 11.9 1.0 OH B:TYR358 1.9 11.1 1.0 NB B:HEM601 2.0 11.9 1.0 ND B:HEM601 2.1 11.9 1.0 NA B:HEM601 2.1 11.9 1.0 NC B:HEM601 2.1 11.9 1.0 C1B B:HEM601 3.0 11.9 1.0 C4B B:HEM601 3.0 11.9 1.0 C1C B:HEM601 3.0 11.9 1.0 C4C B:HEM601 3.0 11.9 1.0 C4A B:HEM601 3.1 11.9 1.0 C1D B:HEM601 3.1 11.9 1.0 C4D B:HEM601 3.1 11.9 1.0 C1A B:HEM601 3.1 11.9 1.0 CZ B:TYR358 3.1 11.1 1.0 CHC B:HEM601 3.4 11.9 1.0 CHB B:HEM601 3.4 11.9 1.0 CHD B:HEM601 3.4 11.9 1.0 CHA B:HEM601 3.4 11.9 1.0 CE1 B:TYR358 3.9 11.1 1.0 CE2 B:TYR358 3.9 11.1 1.0 NE B:ARG354 4.1 12.2 1.0 NH2 B:ARG354 4.1 12.2 1.0 O B:HOH811 4.2 12.3 1.0 C2B B:HEM601 4.2 11.9 1.0 C2C B:HEM601 4.2 11.9 1.0 C3C B:HEM601 4.2 11.9 1.0 C3B B:HEM601 4.2 11.9 1.0 C3A B:HEM601 4.3 11.9 1.0 C2D B:HEM601 4.3 11.9 1.0 C3D B:HEM601 4.3 11.9 1.0 C2A B:HEM601 4.3 11.9 1.0 CZ B:PHE161 4.5 11.6 1.0 CZ B:ARG354 4.5 12.2 1.0 CG2 B:VAL74 4.7 12.0 1.0 NE2 B:HIS75 4.8 12.0 1.0 CD2 B:HIS75 4.9 12.0 1.0

Iron binding site 3 out of 4 in the Cryo-Em Structure of Human Catalase


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Cryo-Em Structure of Human Catalase within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe601 b:11.4 occ:1.00 FE C:HEM601 0.0 11.4 1.0 OH C:TYR358 1.9 10.7 1.0 NB C:HEM601 2.0 11.4 1.0 ND C:HEM601 2.1 11.4 1.0 NC C:HEM601 2.1 11.4 1.0 NA C:HEM601 2.1 11.4 1.0 C1B C:HEM601 3.0 11.4 1.0 C4B C:HEM601 3.0 11.4 1.0 C1C C:HEM601 3.0 11.4 1.0 C4C C:HEM601 3.0 11.4 1.0 C4A C:HEM601 3.1 11.4 1.0 C1D C:HEM601 3.1 11.4 1.0 C4D C:HEM601 3.1 11.4 1.0 C1A C:HEM601 3.1 11.4 1.0 CZ C:TYR358 3.1 10.7 1.0 CHC C:HEM601 3.4 11.4 1.0 CHB C:HEM601 3.4 11.4 1.0 CHD C:HEM601 3.4 11.4 1.0 CHA C:HEM601 3.4 11.4 1.0 CE1 C:TYR358 3.9 10.7 1.0 CE2 C:TYR358 4.0 10.7 1.0 NE C:ARG354 4.0 11.5 1.0 NH2 C:ARG354 4.1 11.5 1.0 O C:HOH797 4.2 12.4 1.0 C2B C:HEM601 4.2 11.4 1.0 C2C C:HEM601 4.2 11.4 1.0 C3C C:HEM601 4.2 11.4 1.0 C3B C:HEM601 4.2 11.4 1.0 C2D C:HEM601 4.3 11.4 1.0 C3A C:HEM601 4.3 11.4 1.0 C3D C:HEM601 4.3 11.4 1.0 C2A C:HEM601 4.3 11.4 1.0 CZ C:ARG354 4.5 11.5 1.0 CZ C:PHE161 4.5 11.4 1.0 CG2 C:VAL74 4.7 11.8 1.0 NE2 C:HIS75 4.8 11.8 1.0 CD2 C:HIS75 4.9 11.8 1.0

Iron binding site 4 out of 4 in the Cryo-Em Structure of Human Catalase


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Cryo-Em Structure of Human Catalase within 5.0Å range: probe atom residue distance (Å) B Occ D:Fe601 b:11.5 occ:1.00 FE D:HEM601 0.0 11.5 1.0 OH D:TYR358 1.9 11.2 1.0 NB D:HEM601 2.0 11.5 1.0 ND D:HEM601 2.1 11.5 1.0 NC D:HEM601 2.1 11.5 1.0 NA D:HEM601 2.1 11.5 1.0 C1B D:HEM601 3.0 11.5 1.0 C4B D:HEM601 3.0 11.5 1.0 C4C D:HEM601 3.0 11.5 1.0 C1C D:HEM601 3.0 11.5 1.0 C1D D:HEM601 3.1 11.5 1.0 C4A D:HEM601 3.1 11.5 1.0 C4D D:HEM601 3.1 11.5 1.0 C1A D:HEM601 3.1 11.5 1.0 CZ D:TYR358 3.1 11.2 1.0 CHC D:HEM601 3.4 11.5 1.0 CHB D:HEM601 3.4 11.5 1.0 CHD D:HEM601 3.4 11.5 1.0 CHA D:HEM601 3.4 11.5 1.0 CE1 D:TYR358 3.9 11.2 1.0 CE2 D:TYR358 4.0 11.2 1.0 NE D:ARG354 4.1 11.8 1.0 NH2 D:ARG354 4.1 11.8 1.0 O D:HOH797 4.2 12.3 1.0 C2B D:HEM601 4.2 11.5 1.0 C3B D:HEM601 4.2 11.5 1.0 C2C D:HEM601 4.2 11.5 1.0 C3C D:HEM601 4.2 11.5 1.0 C2D D:HEM601 4.3 11.5 1.0 C3A D:HEM601 4.3 11.5 1.0 C3D D:HEM601 4.3 11.5 1.0 C2A D:HEM601 4.3 11.5 1.0 CZ D:PHE161 4.5 11.9 1.0 CZ D:ARG354 4.5 11.8 1.0 CG2 D:VAL74 4.7 12.4 1.0 NE2 D:HIS75 4.8 12.3 1.0 CD2 D:HIS75 4.9 12.3 1.0

C.-C.Su, E.Yu. Cryo-Em Structure of Human Catalase To Be Published.