Iron in PDB 8emq: Mouse Apoferritin Heavy Chain with Zinc Determined Using Single- Particle Cryo-Em with Apollo Camera.

Other elements in 8emq:

The structure of Mouse Apoferritin Heavy Chain with Zinc Determined Using Single- Particle Cryo-Em with Apollo Camera. also contains other interesting chemical elements:

Zinc (Zn) 24 atoms

Iron Binding Sites:

The binding sites of Iron atom in the Mouse Apoferritin Heavy Chain with Zinc Determined Using Single- Particle Cryo-Em with Apollo Camera. (pdb code 8emq). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 6 binding sites of Iron where determined in the Mouse Apoferritin Heavy Chain with Zinc Determined Using Single- Particle Cryo-Em with Apollo Camera., PDB code: 8emq:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6;

Iron binding site 1 out of 6 in 8emq

Go back to Iron Binding Sites List in 8emq
Iron binding site 1 out of 6 in the Mouse Apoferritin Heavy Chain with Zinc Determined Using Single- Particle Cryo-Em with Apollo Camera.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Mouse Apoferritin Heavy Chain with Zinc Determined Using Single- Particle Cryo-Em with Apollo Camera. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe201

b:30.0
occ:0.22
NE2 B:HIS173 2.8 18.8 1.0
NE2 C:HIS173 2.9 18.8 1.0
NE2 A:HIS173 2.9 18.8 1.0
NE2 H:HIS173 2.9 18.8 1.0
CE1 B:HIS173 3.5 18.6 1.0
CE1 C:HIS173 3.5 18.6 1.0
CE1 A:HIS173 3.5 18.6 1.0
CE1 H:HIS173 3.5 18.6 1.0
CD2 B:LEU169 3.9 18.8 1.0
CD2 A:LEU169 3.9 18.8 1.0
CD2 C:LEU169 4.0 18.8 1.0
CD2 H:LEU169 4.0 18.8 1.0
CD2 B:HIS173 4.0 19.2 1.0
CD2 C:HIS173 4.0 19.2 1.0
CD2 A:HIS173 4.1 19.2 1.0
CD2 H:HIS173 4.1 19.2 1.0
ND1 B:HIS173 4.7 17.4 1.0
ND1 C:HIS173 4.7 17.4 1.0
CD1 B:LEU169 4.7 20.2 1.0
ND1 A:HIS173 4.8 17.4 1.0
CD1 A:LEU169 4.8 20.2 1.0
CD1 C:LEU169 4.8 20.2 1.0
ND1 H:HIS173 4.8 17.4 1.0
CD1 H:LEU169 4.8 20.2 1.0
CG B:LEU169 4.9 17.5 1.0
CG A:LEU169 4.9 17.5 1.0
CG C:LEU169 5.0 17.5 1.0
CG H:LEU169 5.0 17.5 1.0

Iron binding site 2 out of 6 in 8emq

Go back to Iron Binding Sites List in 8emq
Iron binding site 2 out of 6 in the Mouse Apoferritin Heavy Chain with Zinc Determined Using Single- Particle Cryo-Em with Apollo Camera.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Mouse Apoferritin Heavy Chain with Zinc Determined Using Single- Particle Cryo-Em with Apollo Camera. within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Fe201

b:30.0
occ:0.23
NE2 E:HIS173 2.8 18.8 1.0
NE2 N:HIS173 2.9 18.8 1.0
NE2 D:HIS173 2.9 18.8 1.0
NE2 M:HIS173 2.9 18.8 1.0
CE1 E:HIS173 3.5 18.6 1.0
CE1 N:HIS173 3.5 18.6 1.0
CE1 D:HIS173 3.5 18.6 1.0
CE1 M:HIS173 3.5 18.6 1.0
CD2 E:LEU169 3.9 18.8 1.0
CD2 D:LEU169 3.9 18.8 1.0
CD2 N:LEU169 4.0 18.8 1.0
CD2 M:LEU169 4.0 18.8 1.0
CD2 E:HIS173 4.0 19.2 1.0
CD2 N:HIS173 4.0 19.2 1.0
CD2 D:HIS173 4.1 19.2 1.0
CD2 M:HIS173 4.1 19.2 1.0
ND1 E:HIS173 4.7 17.4 1.0
ND1 N:HIS173 4.7 17.4 1.0
CD1 E:LEU169 4.7 20.2 1.0
ND1 D:HIS173 4.8 17.4 1.0
CD1 D:LEU169 4.8 20.2 1.0
CD1 N:LEU169 4.8 20.2 1.0
ND1 M:HIS173 4.8 17.4 1.0
CD1 M:LEU169 4.8 20.2 1.0
CG E:LEU169 4.9 17.5 1.0
CG D:LEU169 4.9 17.5 1.0
CG N:LEU169 5.0 17.5 1.0
CG M:LEU169 5.0 17.5 1.0

Iron binding site 3 out of 6 in 8emq

Go back to Iron Binding Sites List in 8emq
Iron binding site 3 out of 6 in the Mouse Apoferritin Heavy Chain with Zinc Determined Using Single- Particle Cryo-Em with Apollo Camera.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Mouse Apoferritin Heavy Chain with Zinc Determined Using Single- Particle Cryo-Em with Apollo Camera. within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Fe202

b:30.0
occ:0.22
NE2 V:HIS173 2.8 18.8 1.0
NE2 G:HIS173 2.9 18.8 1.0
NE2 X:HIS173 2.9 18.8 1.0
NE2 F:HIS173 2.9 18.8 1.0
CE1 V:HIS173 3.5 18.6 1.0
CE1 G:HIS173 3.5 18.6 1.0
CE1 X:HIS173 3.5 18.6 1.0
CE1 F:HIS173 3.5 18.6 1.0
CD2 V:LEU169 3.9 18.8 1.0
CD2 X:LEU169 3.9 18.8 1.0
CD2 G:LEU169 4.0 18.8 1.0
CD2 F:LEU169 4.0 18.8 1.0
CD2 V:HIS173 4.0 19.2 1.0
CD2 G:HIS173 4.0 19.2 1.0
CD2 X:HIS173 4.1 19.2 1.0
CD2 F:HIS173 4.1 19.2 1.0
ND1 V:HIS173 4.7 17.4 1.0
ND1 G:HIS173 4.7 17.4 1.0
CD1 V:LEU169 4.7 20.2 1.0
ND1 X:HIS173 4.8 17.4 1.0
CD1 X:LEU169 4.8 20.2 1.0
CD1 G:LEU169 4.8 20.2 1.0
ND1 F:HIS173 4.8 17.4 1.0
CD1 F:LEU169 4.8 20.2 1.0
CG V:LEU169 4.9 17.5 1.0
CG X:LEU169 4.9 17.5 1.0
CG G:LEU169 5.0 17.5 1.0
CG F:LEU169 5.0 17.5 1.0

Iron binding site 4 out of 6 in 8emq

Go back to Iron Binding Sites List in 8emq
Iron binding site 4 out of 6 in the Mouse Apoferritin Heavy Chain with Zinc Determined Using Single- Particle Cryo-Em with Apollo Camera.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Mouse Apoferritin Heavy Chain with Zinc Determined Using Single- Particle Cryo-Em with Apollo Camera. within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Fe201

b:30.0
occ:0.23
NE2 I:HIS173 2.8 18.8 1.0
NE2 K:HIS173 2.9 18.8 1.0
NE2 W:HIS173 2.9 18.8 1.0
NE2 O:HIS173 2.9 18.8 1.0
CE1 I:HIS173 3.5 18.6 1.0
CE1 K:HIS173 3.5 18.6 1.0
CE1 W:HIS173 3.5 18.6 1.0
CE1 O:HIS173 3.5 18.6 1.0
CD2 I:LEU169 3.9 18.8 1.0
CD2 W:LEU169 3.9 18.8 1.0
CD2 K:LEU169 4.0 18.8 1.0
CD2 O:LEU169 4.0 18.8 1.0
CD2 I:HIS173 4.0 19.2 1.0
CD2 K:HIS173 4.0 19.2 1.0
CD2 W:HIS173 4.1 19.2 1.0
CD2 O:HIS173 4.1 19.2 1.0
ND1 I:HIS173 4.7 17.4 1.0
ND1 K:HIS173 4.7 17.4 1.0
CD1 I:LEU169 4.7 20.2 1.0
ND1 W:HIS173 4.8 17.4 1.0
CD1 W:LEU169 4.8 20.2 1.0
CD1 K:LEU169 4.8 20.2 1.0
ND1 O:HIS173 4.8 17.4 1.0
CD1 O:LEU169 4.8 20.2 1.0
CG I:LEU169 4.9 17.5 1.0
CG W:LEU169 4.9 17.5 1.0
CG K:LEU169 5.0 17.5 1.0
CG O:LEU169 5.0 17.5 1.0

Iron binding site 5 out of 6 in 8emq

Go back to Iron Binding Sites List in 8emq
Iron binding site 5 out of 6 in the Mouse Apoferritin Heavy Chain with Zinc Determined Using Single- Particle Cryo-Em with Apollo Camera.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Mouse Apoferritin Heavy Chain with Zinc Determined Using Single- Particle Cryo-Em with Apollo Camera. within 5.0Å range:
probe atom residue distance (Å) B Occ
J:Fe201

b:30.0
occ:0.22
NE2 J:HIS173 2.8 18.8 1.0
NE2 L:HIS173 2.9 18.8 1.0
NE2 P:HIS173 2.9 18.8 1.0
NE2 Q:HIS173 2.9 18.8 1.0
CE1 J:HIS173 3.5 18.6 1.0
CE1 L:HIS173 3.5 18.6 1.0
CE1 P:HIS173 3.5 18.6 1.0
CE1 Q:HIS173 3.5 18.6 1.0
CD2 J:LEU169 3.9 18.8 1.0
CD2 P:LEU169 3.9 18.8 1.0
CD2 L:LEU169 4.0 18.8 1.0
CD2 Q:LEU169 4.0 18.8 1.0
CD2 J:HIS173 4.0 19.2 1.0
CD2 L:HIS173 4.0 19.2 1.0
CD2 P:HIS173 4.1 19.2 1.0
CD2 Q:HIS173 4.1 19.2 1.0
ND1 J:HIS173 4.7 17.4 1.0
ND1 L:HIS173 4.7 17.4 1.0
CD1 J:LEU169 4.7 20.2 1.0
ND1 P:HIS173 4.8 17.4 1.0
CD1 P:LEU169 4.8 20.2 1.0
CD1 L:LEU169 4.8 20.2 1.0
ND1 Q:HIS173 4.8 17.4 1.0
CD1 Q:LEU169 4.8 20.2 1.0
CG J:LEU169 4.9 17.5 1.0
CG P:LEU169 4.9 17.5 1.0
CG L:LEU169 5.0 17.5 1.0
CG Q:LEU169 5.0 17.5 1.0

Iron binding site 6 out of 6 in 8emq

Go back to Iron Binding Sites List in 8emq
Iron binding site 6 out of 6 in the Mouse Apoferritin Heavy Chain with Zinc Determined Using Single- Particle Cryo-Em with Apollo Camera.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Mouse Apoferritin Heavy Chain with Zinc Determined Using Single- Particle Cryo-Em with Apollo Camera. within 5.0Å range:
probe atom residue distance (Å) B Occ
R:Fe202

b:30.0
occ:0.22
NE2 U:HIS173 2.8 18.8 1.0
NE2 R:HIS173 2.9 18.8 1.0
NE2 T:HIS173 2.9 18.8 1.0
NE2 S:HIS173 2.9 18.8 1.0
CE1 U:HIS173 3.5 18.6 1.0
CE1 R:HIS173 3.5 18.6 1.0
CE1 T:HIS173 3.5 18.6 1.0
CE1 S:HIS173 3.5 18.6 1.0
CD2 U:LEU169 3.9 18.8 1.0
CD2 T:LEU169 3.9 18.8 1.0
CD2 R:LEU169 4.0 18.8 1.0
CD2 S:LEU169 4.0 18.8 1.0
CD2 U:HIS173 4.0 19.2 1.0
CD2 R:HIS173 4.0 19.2 1.0
CD2 T:HIS173 4.1 19.2 1.0
CD2 S:HIS173 4.1 19.2 1.0
ND1 U:HIS173 4.7 17.4 1.0
ND1 R:HIS173 4.7 17.4 1.0
CD1 U:LEU169 4.7 20.2 1.0
ND1 T:HIS173 4.8 17.4 1.0
CD1 T:LEU169 4.8 20.2 1.0
CD1 R:LEU169 4.8 20.2 1.0
ND1 S:HIS173 4.8 17.4 1.0
CD1 S:LEU169 4.8 20.2 1.0
CG U:LEU169 4.9 17.5 1.0
CG T:LEU169 4.9 17.5 1.0
CG R:LEU169 5.0 17.5 1.0
CG S:LEU169 5.0 17.5 1.0

Reference:

R.Peng, X.Fu, J.H.Mendez, P.S.Randolph, B.E.Bammes, S.M.Stagg. Characterizing the Resolution and Throughput of the Apollo Direct Electron Detector J Struct Biol X 2022.
ISSN: ESSN 2590-1524
DOI: 10.1016/J.YJSBX.2022.100080
Page generated: Wed Apr 5 08:39:25 2023

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy