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Iron in PDB 8emq: Mouse Apoferritin Heavy Chain with Zinc Determined Using Single- Particle Cryo-Em with Apollo Camera.

Other elements in 8emq:

The structure of Mouse Apoferritin Heavy Chain with Zinc Determined Using Single- Particle Cryo-Em with Apollo Camera. also contains other interesting chemical elements:

Zinc (Zn) 24 atoms

Iron Binding Sites:

The binding sites of Iron atom in the Mouse Apoferritin Heavy Chain with Zinc Determined Using Single- Particle Cryo-Em with Apollo Camera. (pdb code 8emq). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 6 binding sites of Iron where determined in the Mouse Apoferritin Heavy Chain with Zinc Determined Using Single- Particle Cryo-Em with Apollo Camera., PDB code: 8emq:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6;

Iron binding site 1 out of 6 in 8emq

Go back to Iron Binding Sites List in 8emq
Iron binding site 1 out of 6 in the Mouse Apoferritin Heavy Chain with Zinc Determined Using Single- Particle Cryo-Em with Apollo Camera.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Mouse Apoferritin Heavy Chain with Zinc Determined Using Single- Particle Cryo-Em with Apollo Camera. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe201

b:30.0
occ:0.22
NE2 B:HIS173 2.8 18.8 1.0
NE2 C:HIS173 2.9 18.8 1.0
NE2 A:HIS173 2.9 18.8 1.0
NE2 H:HIS173 2.9 18.8 1.0
CE1 B:HIS173 3.5 18.6 1.0
CE1 C:HIS173 3.5 18.6 1.0
CE1 A:HIS173 3.5 18.6 1.0
CE1 H:HIS173 3.5 18.6 1.0
CD2 B:LEU169 3.9 18.8 1.0
CD2 A:LEU169 3.9 18.8 1.0
CD2 C:LEU169 4.0 18.8 1.0
CD2 H:LEU169 4.0 18.8 1.0
CD2 B:HIS173 4.0 19.2 1.0
CD2 C:HIS173 4.0 19.2 1.0
CD2 A:HIS173 4.1 19.2 1.0
CD2 H:HIS173 4.1 19.2 1.0
ND1 B:HIS173 4.7 17.4 1.0
ND1 C:HIS173 4.7 17.4 1.0
CD1 B:LEU169 4.7 20.2 1.0
ND1 A:HIS173 4.8 17.4 1.0
CD1 A:LEU169 4.8 20.2 1.0
CD1 C:LEU169 4.8 20.2 1.0
ND1 H:HIS173 4.8 17.4 1.0
CD1 H:LEU169 4.8 20.2 1.0
CG B:LEU169 4.9 17.5 1.0
CG A:LEU169 4.9 17.5 1.0
CG C:LEU169 5.0 17.5 1.0
CG H:LEU169 5.0 17.5 1.0

Iron binding site 2 out of 6 in 8emq

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Iron binding site 2 out of 6 in the Mouse Apoferritin Heavy Chain with Zinc Determined Using Single- Particle Cryo-Em with Apollo Camera.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Mouse Apoferritin Heavy Chain with Zinc Determined Using Single- Particle Cryo-Em with Apollo Camera. within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Fe201

b:30.0
occ:0.23
NE2 E:HIS173 2.8 18.8 1.0
NE2 N:HIS173 2.9 18.8 1.0
NE2 D:HIS173 2.9 18.8 1.0
NE2 M:HIS173 2.9 18.8 1.0
CE1 E:HIS173 3.5 18.6 1.0
CE1 N:HIS173 3.5 18.6 1.0
CE1 D:HIS173 3.5 18.6 1.0
CE1 M:HIS173 3.5 18.6 1.0
CD2 E:LEU169 3.9 18.8 1.0
CD2 D:LEU169 3.9 18.8 1.0
CD2 N:LEU169 4.0 18.8 1.0
CD2 M:LEU169 4.0 18.8 1.0
CD2 E:HIS173 4.0 19.2 1.0
CD2 N:HIS173 4.0 19.2 1.0
CD2 D:HIS173 4.1 19.2 1.0
CD2 M:HIS173 4.1 19.2 1.0
ND1 E:HIS173 4.7 17.4 1.0
ND1 N:HIS173 4.7 17.4 1.0
CD1 E:LEU169 4.7 20.2 1.0
ND1 D:HIS173 4.8 17.4 1.0
CD1 D:LEU169 4.8 20.2 1.0
CD1 N:LEU169 4.8 20.2 1.0
ND1 M:HIS173 4.8 17.4 1.0
CD1 M:LEU169 4.8 20.2 1.0
CG E:LEU169 4.9 17.5 1.0
CG D:LEU169 4.9 17.5 1.0
CG N:LEU169 5.0 17.5 1.0
CG M:LEU169 5.0 17.5 1.0

Iron binding site 3 out of 6 in 8emq

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Iron binding site 3 out of 6 in the Mouse Apoferritin Heavy Chain with Zinc Determined Using Single- Particle Cryo-Em with Apollo Camera.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Mouse Apoferritin Heavy Chain with Zinc Determined Using Single- Particle Cryo-Em with Apollo Camera. within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Fe202

b:30.0
occ:0.22
NE2 V:HIS173 2.8 18.8 1.0
NE2 G:HIS173 2.9 18.8 1.0
NE2 X:HIS173 2.9 18.8 1.0
NE2 F:HIS173 2.9 18.8 1.0
CE1 V:HIS173 3.5 18.6 1.0
CE1 G:HIS173 3.5 18.6 1.0
CE1 X:HIS173 3.5 18.6 1.0
CE1 F:HIS173 3.5 18.6 1.0
CD2 V:LEU169 3.9 18.8 1.0
CD2 X:LEU169 3.9 18.8 1.0
CD2 G:LEU169 4.0 18.8 1.0
CD2 F:LEU169 4.0 18.8 1.0
CD2 V:HIS173 4.0 19.2 1.0
CD2 G:HIS173 4.0 19.2 1.0
CD2 X:HIS173 4.1 19.2 1.0
CD2 F:HIS173 4.1 19.2 1.0
ND1 V:HIS173 4.7 17.4 1.0
ND1 G:HIS173 4.7 17.4 1.0
CD1 V:LEU169 4.7 20.2 1.0
ND1 X:HIS173 4.8 17.4 1.0
CD1 X:LEU169 4.8 20.2 1.0
CD1 G:LEU169 4.8 20.2 1.0
ND1 F:HIS173 4.8 17.4 1.0
CD1 F:LEU169 4.8 20.2 1.0
CG V:LEU169 4.9 17.5 1.0
CG X:LEU169 4.9 17.5 1.0
CG G:LEU169 5.0 17.5 1.0
CG F:LEU169 5.0 17.5 1.0

Iron binding site 4 out of 6 in 8emq

Go back to Iron Binding Sites List in 8emq
Iron binding site 4 out of 6 in the Mouse Apoferritin Heavy Chain with Zinc Determined Using Single- Particle Cryo-Em with Apollo Camera.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Mouse Apoferritin Heavy Chain with Zinc Determined Using Single- Particle Cryo-Em with Apollo Camera. within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Fe201

b:30.0
occ:0.23
NE2 I:HIS173 2.8 18.8 1.0
NE2 K:HIS173 2.9 18.8 1.0
NE2 W:HIS173 2.9 18.8 1.0
NE2 O:HIS173 2.9 18.8 1.0
CE1 I:HIS173 3.5 18.6 1.0
CE1 K:HIS173 3.5 18.6 1.0
CE1 W:HIS173 3.5 18.6 1.0
CE1 O:HIS173 3.5 18.6 1.0
CD2 I:LEU169 3.9 18.8 1.0
CD2 W:LEU169 3.9 18.8 1.0
CD2 K:LEU169 4.0 18.8 1.0
CD2 O:LEU169 4.0 18.8 1.0
CD2 I:HIS173 4.0 19.2 1.0
CD2 K:HIS173 4.0 19.2 1.0
CD2 W:HIS173 4.1 19.2 1.0
CD2 O:HIS173 4.1 19.2 1.0
ND1 I:HIS173 4.7 17.4 1.0
ND1 K:HIS173 4.7 17.4 1.0
CD1 I:LEU169 4.7 20.2 1.0
ND1 W:HIS173 4.8 17.4 1.0
CD1 W:LEU169 4.8 20.2 1.0
CD1 K:LEU169 4.8 20.2 1.0
ND1 O:HIS173 4.8 17.4 1.0
CD1 O:LEU169 4.8 20.2 1.0
CG I:LEU169 4.9 17.5 1.0
CG W:LEU169 4.9 17.5 1.0
CG K:LEU169 5.0 17.5 1.0
CG O:LEU169 5.0 17.5 1.0

Iron binding site 5 out of 6 in 8emq

Go back to Iron Binding Sites List in 8emq
Iron binding site 5 out of 6 in the Mouse Apoferritin Heavy Chain with Zinc Determined Using Single- Particle Cryo-Em with Apollo Camera.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Mouse Apoferritin Heavy Chain with Zinc Determined Using Single- Particle Cryo-Em with Apollo Camera. within 5.0Å range:
probe atom residue distance (Å) B Occ
J:Fe201

b:30.0
occ:0.22
NE2 J:HIS173 2.8 18.8 1.0
NE2 L:HIS173 2.9 18.8 1.0
NE2 P:HIS173 2.9 18.8 1.0
NE2 Q:HIS173 2.9 18.8 1.0
CE1 J:HIS173 3.5 18.6 1.0
CE1 L:HIS173 3.5 18.6 1.0
CE1 P:HIS173 3.5 18.6 1.0
CE1 Q:HIS173 3.5 18.6 1.0
CD2 J:LEU169 3.9 18.8 1.0
CD2 P:LEU169 3.9 18.8 1.0
CD2 L:LEU169 4.0 18.8 1.0
CD2 Q:LEU169 4.0 18.8 1.0
CD2 J:HIS173 4.0 19.2 1.0
CD2 L:HIS173 4.0 19.2 1.0
CD2 P:HIS173 4.1 19.2 1.0
CD2 Q:HIS173 4.1 19.2 1.0
ND1 J:HIS173 4.7 17.4 1.0
ND1 L:HIS173 4.7 17.4 1.0
CD1 J:LEU169 4.7 20.2 1.0
ND1 P:HIS173 4.8 17.4 1.0
CD1 P:LEU169 4.8 20.2 1.0
CD1 L:LEU169 4.8 20.2 1.0
ND1 Q:HIS173 4.8 17.4 1.0
CD1 Q:LEU169 4.8 20.2 1.0
CG J:LEU169 4.9 17.5 1.0
CG P:LEU169 4.9 17.5 1.0
CG L:LEU169 5.0 17.5 1.0
CG Q:LEU169 5.0 17.5 1.0

Iron binding site 6 out of 6 in 8emq

Go back to Iron Binding Sites List in 8emq
Iron binding site 6 out of 6 in the Mouse Apoferritin Heavy Chain with Zinc Determined Using Single- Particle Cryo-Em with Apollo Camera.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Mouse Apoferritin Heavy Chain with Zinc Determined Using Single- Particle Cryo-Em with Apollo Camera. within 5.0Å range:
probe atom residue distance (Å) B Occ
R:Fe202

b:30.0
occ:0.22
NE2 U:HIS173 2.8 18.8 1.0
NE2 R:HIS173 2.9 18.8 1.0
NE2 T:HIS173 2.9 18.8 1.0
NE2 S:HIS173 2.9 18.8 1.0
CE1 U:HIS173 3.5 18.6 1.0
CE1 R:HIS173 3.5 18.6 1.0
CE1 T:HIS173 3.5 18.6 1.0
CE1 S:HIS173 3.5 18.6 1.0
CD2 U:LEU169 3.9 18.8 1.0
CD2 T:LEU169 3.9 18.8 1.0
CD2 R:LEU169 4.0 18.8 1.0
CD2 S:LEU169 4.0 18.8 1.0
CD2 U:HIS173 4.0 19.2 1.0
CD2 R:HIS173 4.0 19.2 1.0
CD2 T:HIS173 4.1 19.2 1.0
CD2 S:HIS173 4.1 19.2 1.0
ND1 U:HIS173 4.7 17.4 1.0
ND1 R:HIS173 4.7 17.4 1.0
CD1 U:LEU169 4.7 20.2 1.0
ND1 T:HIS173 4.8 17.4 1.0
CD1 T:LEU169 4.8 20.2 1.0
CD1 R:LEU169 4.8 20.2 1.0
ND1 S:HIS173 4.8 17.4 1.0
CD1 S:LEU169 4.8 20.2 1.0
CG U:LEU169 4.9 17.5 1.0
CG T:LEU169 4.9 17.5 1.0
CG R:LEU169 5.0 17.5 1.0
CG S:LEU169 5.0 17.5 1.0

Reference:

R.Peng, X.Fu, J.H.Mendez, P.S.Randolph, B.E.Bammes, S.M.Stagg. Characterizing the Resolution and Throughput of the Apollo Direct Electron Detector J Struct Biol X 2022.
ISSN: ESSN 2590-1524
DOI: 10.1016/J.YJSBX.2022.100080
Page generated: Sat Aug 10 01:36:16 2024

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