Iron in PDB 8emq: Mouse Apoferritin Heavy Chain with Zinc Determined Using Single- Particle Cryo-Em with Apollo Camera.
Other elements in 8emq:
The structure of Mouse Apoferritin Heavy Chain with Zinc Determined Using Single- Particle Cryo-Em with Apollo Camera. also contains other interesting chemical elements:
Iron Binding Sites:
The binding sites of Iron atom in the Mouse Apoferritin Heavy Chain with Zinc Determined Using Single- Particle Cryo-Em with Apollo Camera.
(pdb code 8emq). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 6 binding sites of Iron where determined in the
Mouse Apoferritin Heavy Chain with Zinc Determined Using Single- Particle Cryo-Em with Apollo Camera., PDB code: 8emq:
Jump to Iron binding site number:
1;
2;
3;
4;
5;
6;
Iron binding site 1 out
of 6 in 8emq
Go back to
Iron Binding Sites List in 8emq
Iron binding site 1 out
of 6 in the Mouse Apoferritin Heavy Chain with Zinc Determined Using Single- Particle Cryo-Em with Apollo Camera.
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Mouse Apoferritin Heavy Chain with Zinc Determined Using Single- Particle Cryo-Em with Apollo Camera. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe201
b:30.0
occ:0.22
|
NE2
|
B:HIS173
|
2.8
|
18.8
|
1.0
|
NE2
|
C:HIS173
|
2.9
|
18.8
|
1.0
|
NE2
|
A:HIS173
|
2.9
|
18.8
|
1.0
|
NE2
|
H:HIS173
|
2.9
|
18.8
|
1.0
|
CE1
|
B:HIS173
|
3.5
|
18.6
|
1.0
|
CE1
|
C:HIS173
|
3.5
|
18.6
|
1.0
|
CE1
|
A:HIS173
|
3.5
|
18.6
|
1.0
|
CE1
|
H:HIS173
|
3.5
|
18.6
|
1.0
|
CD2
|
B:LEU169
|
3.9
|
18.8
|
1.0
|
CD2
|
A:LEU169
|
3.9
|
18.8
|
1.0
|
CD2
|
C:LEU169
|
4.0
|
18.8
|
1.0
|
CD2
|
H:LEU169
|
4.0
|
18.8
|
1.0
|
CD2
|
B:HIS173
|
4.0
|
19.2
|
1.0
|
CD2
|
C:HIS173
|
4.0
|
19.2
|
1.0
|
CD2
|
A:HIS173
|
4.1
|
19.2
|
1.0
|
CD2
|
H:HIS173
|
4.1
|
19.2
|
1.0
|
ND1
|
B:HIS173
|
4.7
|
17.4
|
1.0
|
ND1
|
C:HIS173
|
4.7
|
17.4
|
1.0
|
CD1
|
B:LEU169
|
4.7
|
20.2
|
1.0
|
ND1
|
A:HIS173
|
4.8
|
17.4
|
1.0
|
CD1
|
A:LEU169
|
4.8
|
20.2
|
1.0
|
CD1
|
C:LEU169
|
4.8
|
20.2
|
1.0
|
ND1
|
H:HIS173
|
4.8
|
17.4
|
1.0
|
CD1
|
H:LEU169
|
4.8
|
20.2
|
1.0
|
CG
|
B:LEU169
|
4.9
|
17.5
|
1.0
|
CG
|
A:LEU169
|
4.9
|
17.5
|
1.0
|
CG
|
C:LEU169
|
5.0
|
17.5
|
1.0
|
CG
|
H:LEU169
|
5.0
|
17.5
|
1.0
|
|
Iron binding site 2 out
of 6 in 8emq
Go back to
Iron Binding Sites List in 8emq
Iron binding site 2 out
of 6 in the Mouse Apoferritin Heavy Chain with Zinc Determined Using Single- Particle Cryo-Em with Apollo Camera.
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Mouse Apoferritin Heavy Chain with Zinc Determined Using Single- Particle Cryo-Em with Apollo Camera. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Fe201
b:30.0
occ:0.23
|
NE2
|
E:HIS173
|
2.8
|
18.8
|
1.0
|
NE2
|
N:HIS173
|
2.9
|
18.8
|
1.0
|
NE2
|
D:HIS173
|
2.9
|
18.8
|
1.0
|
NE2
|
M:HIS173
|
2.9
|
18.8
|
1.0
|
CE1
|
E:HIS173
|
3.5
|
18.6
|
1.0
|
CE1
|
N:HIS173
|
3.5
|
18.6
|
1.0
|
CE1
|
D:HIS173
|
3.5
|
18.6
|
1.0
|
CE1
|
M:HIS173
|
3.5
|
18.6
|
1.0
|
CD2
|
E:LEU169
|
3.9
|
18.8
|
1.0
|
CD2
|
D:LEU169
|
3.9
|
18.8
|
1.0
|
CD2
|
N:LEU169
|
4.0
|
18.8
|
1.0
|
CD2
|
M:LEU169
|
4.0
|
18.8
|
1.0
|
CD2
|
E:HIS173
|
4.0
|
19.2
|
1.0
|
CD2
|
N:HIS173
|
4.0
|
19.2
|
1.0
|
CD2
|
D:HIS173
|
4.1
|
19.2
|
1.0
|
CD2
|
M:HIS173
|
4.1
|
19.2
|
1.0
|
ND1
|
E:HIS173
|
4.7
|
17.4
|
1.0
|
ND1
|
N:HIS173
|
4.7
|
17.4
|
1.0
|
CD1
|
E:LEU169
|
4.7
|
20.2
|
1.0
|
ND1
|
D:HIS173
|
4.8
|
17.4
|
1.0
|
CD1
|
D:LEU169
|
4.8
|
20.2
|
1.0
|
CD1
|
N:LEU169
|
4.8
|
20.2
|
1.0
|
ND1
|
M:HIS173
|
4.8
|
17.4
|
1.0
|
CD1
|
M:LEU169
|
4.8
|
20.2
|
1.0
|
CG
|
E:LEU169
|
4.9
|
17.5
|
1.0
|
CG
|
D:LEU169
|
4.9
|
17.5
|
1.0
|
CG
|
N:LEU169
|
5.0
|
17.5
|
1.0
|
CG
|
M:LEU169
|
5.0
|
17.5
|
1.0
|
|
Iron binding site 3 out
of 6 in 8emq
Go back to
Iron Binding Sites List in 8emq
Iron binding site 3 out
of 6 in the Mouse Apoferritin Heavy Chain with Zinc Determined Using Single- Particle Cryo-Em with Apollo Camera.
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Mouse Apoferritin Heavy Chain with Zinc Determined Using Single- Particle Cryo-Em with Apollo Camera. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Fe202
b:30.0
occ:0.22
|
NE2
|
V:HIS173
|
2.8
|
18.8
|
1.0
|
NE2
|
G:HIS173
|
2.9
|
18.8
|
1.0
|
NE2
|
X:HIS173
|
2.9
|
18.8
|
1.0
|
NE2
|
F:HIS173
|
2.9
|
18.8
|
1.0
|
CE1
|
V:HIS173
|
3.5
|
18.6
|
1.0
|
CE1
|
G:HIS173
|
3.5
|
18.6
|
1.0
|
CE1
|
X:HIS173
|
3.5
|
18.6
|
1.0
|
CE1
|
F:HIS173
|
3.5
|
18.6
|
1.0
|
CD2
|
V:LEU169
|
3.9
|
18.8
|
1.0
|
CD2
|
X:LEU169
|
3.9
|
18.8
|
1.0
|
CD2
|
G:LEU169
|
4.0
|
18.8
|
1.0
|
CD2
|
F:LEU169
|
4.0
|
18.8
|
1.0
|
CD2
|
V:HIS173
|
4.0
|
19.2
|
1.0
|
CD2
|
G:HIS173
|
4.0
|
19.2
|
1.0
|
CD2
|
X:HIS173
|
4.1
|
19.2
|
1.0
|
CD2
|
F:HIS173
|
4.1
|
19.2
|
1.0
|
ND1
|
V:HIS173
|
4.7
|
17.4
|
1.0
|
ND1
|
G:HIS173
|
4.7
|
17.4
|
1.0
|
CD1
|
V:LEU169
|
4.7
|
20.2
|
1.0
|
ND1
|
X:HIS173
|
4.8
|
17.4
|
1.0
|
CD1
|
X:LEU169
|
4.8
|
20.2
|
1.0
|
CD1
|
G:LEU169
|
4.8
|
20.2
|
1.0
|
ND1
|
F:HIS173
|
4.8
|
17.4
|
1.0
|
CD1
|
F:LEU169
|
4.8
|
20.2
|
1.0
|
CG
|
V:LEU169
|
4.9
|
17.5
|
1.0
|
CG
|
X:LEU169
|
4.9
|
17.5
|
1.0
|
CG
|
G:LEU169
|
5.0
|
17.5
|
1.0
|
CG
|
F:LEU169
|
5.0
|
17.5
|
1.0
|
|
Iron binding site 4 out
of 6 in 8emq
Go back to
Iron Binding Sites List in 8emq
Iron binding site 4 out
of 6 in the Mouse Apoferritin Heavy Chain with Zinc Determined Using Single- Particle Cryo-Em with Apollo Camera.
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Mouse Apoferritin Heavy Chain with Zinc Determined Using Single- Particle Cryo-Em with Apollo Camera. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
I:Fe201
b:30.0
occ:0.23
|
NE2
|
I:HIS173
|
2.8
|
18.8
|
1.0
|
NE2
|
K:HIS173
|
2.9
|
18.8
|
1.0
|
NE2
|
W:HIS173
|
2.9
|
18.8
|
1.0
|
NE2
|
O:HIS173
|
2.9
|
18.8
|
1.0
|
CE1
|
I:HIS173
|
3.5
|
18.6
|
1.0
|
CE1
|
K:HIS173
|
3.5
|
18.6
|
1.0
|
CE1
|
W:HIS173
|
3.5
|
18.6
|
1.0
|
CE1
|
O:HIS173
|
3.5
|
18.6
|
1.0
|
CD2
|
I:LEU169
|
3.9
|
18.8
|
1.0
|
CD2
|
W:LEU169
|
3.9
|
18.8
|
1.0
|
CD2
|
K:LEU169
|
4.0
|
18.8
|
1.0
|
CD2
|
O:LEU169
|
4.0
|
18.8
|
1.0
|
CD2
|
I:HIS173
|
4.0
|
19.2
|
1.0
|
CD2
|
K:HIS173
|
4.0
|
19.2
|
1.0
|
CD2
|
W:HIS173
|
4.1
|
19.2
|
1.0
|
CD2
|
O:HIS173
|
4.1
|
19.2
|
1.0
|
ND1
|
I:HIS173
|
4.7
|
17.4
|
1.0
|
ND1
|
K:HIS173
|
4.7
|
17.4
|
1.0
|
CD1
|
I:LEU169
|
4.7
|
20.2
|
1.0
|
ND1
|
W:HIS173
|
4.8
|
17.4
|
1.0
|
CD1
|
W:LEU169
|
4.8
|
20.2
|
1.0
|
CD1
|
K:LEU169
|
4.8
|
20.2
|
1.0
|
ND1
|
O:HIS173
|
4.8
|
17.4
|
1.0
|
CD1
|
O:LEU169
|
4.8
|
20.2
|
1.0
|
CG
|
I:LEU169
|
4.9
|
17.5
|
1.0
|
CG
|
W:LEU169
|
4.9
|
17.5
|
1.0
|
CG
|
K:LEU169
|
5.0
|
17.5
|
1.0
|
CG
|
O:LEU169
|
5.0
|
17.5
|
1.0
|
|
Iron binding site 5 out
of 6 in 8emq
Go back to
Iron Binding Sites List in 8emq
Iron binding site 5 out
of 6 in the Mouse Apoferritin Heavy Chain with Zinc Determined Using Single- Particle Cryo-Em with Apollo Camera.
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of Mouse Apoferritin Heavy Chain with Zinc Determined Using Single- Particle Cryo-Em with Apollo Camera. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
J:Fe201
b:30.0
occ:0.22
|
NE2
|
J:HIS173
|
2.8
|
18.8
|
1.0
|
NE2
|
L:HIS173
|
2.9
|
18.8
|
1.0
|
NE2
|
P:HIS173
|
2.9
|
18.8
|
1.0
|
NE2
|
Q:HIS173
|
2.9
|
18.8
|
1.0
|
CE1
|
J:HIS173
|
3.5
|
18.6
|
1.0
|
CE1
|
L:HIS173
|
3.5
|
18.6
|
1.0
|
CE1
|
P:HIS173
|
3.5
|
18.6
|
1.0
|
CE1
|
Q:HIS173
|
3.5
|
18.6
|
1.0
|
CD2
|
J:LEU169
|
3.9
|
18.8
|
1.0
|
CD2
|
P:LEU169
|
3.9
|
18.8
|
1.0
|
CD2
|
L:LEU169
|
4.0
|
18.8
|
1.0
|
CD2
|
Q:LEU169
|
4.0
|
18.8
|
1.0
|
CD2
|
J:HIS173
|
4.0
|
19.2
|
1.0
|
CD2
|
L:HIS173
|
4.0
|
19.2
|
1.0
|
CD2
|
P:HIS173
|
4.1
|
19.2
|
1.0
|
CD2
|
Q:HIS173
|
4.1
|
19.2
|
1.0
|
ND1
|
J:HIS173
|
4.7
|
17.4
|
1.0
|
ND1
|
L:HIS173
|
4.7
|
17.4
|
1.0
|
CD1
|
J:LEU169
|
4.7
|
20.2
|
1.0
|
ND1
|
P:HIS173
|
4.8
|
17.4
|
1.0
|
CD1
|
P:LEU169
|
4.8
|
20.2
|
1.0
|
CD1
|
L:LEU169
|
4.8
|
20.2
|
1.0
|
ND1
|
Q:HIS173
|
4.8
|
17.4
|
1.0
|
CD1
|
Q:LEU169
|
4.8
|
20.2
|
1.0
|
CG
|
J:LEU169
|
4.9
|
17.5
|
1.0
|
CG
|
P:LEU169
|
4.9
|
17.5
|
1.0
|
CG
|
L:LEU169
|
5.0
|
17.5
|
1.0
|
CG
|
Q:LEU169
|
5.0
|
17.5
|
1.0
|
|
Iron binding site 6 out
of 6 in 8emq
Go back to
Iron Binding Sites List in 8emq
Iron binding site 6 out
of 6 in the Mouse Apoferritin Heavy Chain with Zinc Determined Using Single- Particle Cryo-Em with Apollo Camera.
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of Mouse Apoferritin Heavy Chain with Zinc Determined Using Single- Particle Cryo-Em with Apollo Camera. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
R:Fe202
b:30.0
occ:0.22
|
NE2
|
U:HIS173
|
2.8
|
18.8
|
1.0
|
NE2
|
R:HIS173
|
2.9
|
18.8
|
1.0
|
NE2
|
T:HIS173
|
2.9
|
18.8
|
1.0
|
NE2
|
S:HIS173
|
2.9
|
18.8
|
1.0
|
CE1
|
U:HIS173
|
3.5
|
18.6
|
1.0
|
CE1
|
R:HIS173
|
3.5
|
18.6
|
1.0
|
CE1
|
T:HIS173
|
3.5
|
18.6
|
1.0
|
CE1
|
S:HIS173
|
3.5
|
18.6
|
1.0
|
CD2
|
U:LEU169
|
3.9
|
18.8
|
1.0
|
CD2
|
T:LEU169
|
3.9
|
18.8
|
1.0
|
CD2
|
R:LEU169
|
4.0
|
18.8
|
1.0
|
CD2
|
S:LEU169
|
4.0
|
18.8
|
1.0
|
CD2
|
U:HIS173
|
4.0
|
19.2
|
1.0
|
CD2
|
R:HIS173
|
4.0
|
19.2
|
1.0
|
CD2
|
T:HIS173
|
4.1
|
19.2
|
1.0
|
CD2
|
S:HIS173
|
4.1
|
19.2
|
1.0
|
ND1
|
U:HIS173
|
4.7
|
17.4
|
1.0
|
ND1
|
R:HIS173
|
4.7
|
17.4
|
1.0
|
CD1
|
U:LEU169
|
4.7
|
20.2
|
1.0
|
ND1
|
T:HIS173
|
4.8
|
17.4
|
1.0
|
CD1
|
T:LEU169
|
4.8
|
20.2
|
1.0
|
CD1
|
R:LEU169
|
4.8
|
20.2
|
1.0
|
ND1
|
S:HIS173
|
4.8
|
17.4
|
1.0
|
CD1
|
S:LEU169
|
4.8
|
20.2
|
1.0
|
CG
|
U:LEU169
|
4.9
|
17.5
|
1.0
|
CG
|
T:LEU169
|
4.9
|
17.5
|
1.0
|
CG
|
R:LEU169
|
5.0
|
17.5
|
1.0
|
CG
|
S:LEU169
|
5.0
|
17.5
|
1.0
|
|
Reference:
R.Peng,
X.Fu,
J.H.Mendez,
P.S.Randolph,
B.E.Bammes,
S.M.Stagg.
Characterizing the Resolution and Throughput of the Apollo Direct Electron Detector J Struct Biol X 2022.
ISSN: ESSN 2590-1524
DOI: 10.1016/J.YJSBX.2022.100080
Page generated: Sat Aug 10 01:36:16 2024
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