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Iron in PDB 8emt: Cryo-Em Analysis of the Human Aldehyde Oxidase From Liver

Enzymatic activity of Cryo-Em Analysis of the Human Aldehyde Oxidase From Liver

All present enzymatic activity of Cryo-Em Analysis of the Human Aldehyde Oxidase From Liver:
1.2.3.1;

Other elements in 8emt:

The structure of Cryo-Em Analysis of the Human Aldehyde Oxidase From Liver also contains other interesting chemical elements:

Molybdenum (Mo) 2 atoms

Iron Binding Sites:

The binding sites of Iron atom in the Cryo-Em Analysis of the Human Aldehyde Oxidase From Liver (pdb code 8emt). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 8 binding sites of Iron where determined in the Cryo-Em Analysis of the Human Aldehyde Oxidase From Liver, PDB code: 8emt:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Iron binding site 1 out of 8 in 8emt

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Iron binding site 1 out of 8 in the Cryo-Em Analysis of the Human Aldehyde Oxidase From Liver


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Cryo-Em Analysis of the Human Aldehyde Oxidase From Liver within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe3001

b:72.3
occ:1.00
 FE1 B:FES3001 0.0 72.3 1.0
S1 B:FES3001 2.2 72.3 1.0
S2 B:FES3001 2.2 72.3 1.0
SG B:CYS149 2.3 71.1 1.0
SG B:CYS117 2.3 62.0 1.0
FE2 B:FES3001 2.7 72.3 1.0
CB B:CYS117 3.0 62.0 1.0
CB B:CYS149 3.3 71.1 1.0
CA B:CYS149 3.7 71.1 1.0
CA B:CYS117 4.2 62.0 1.0
N B:CYS117 4.3 62.0 1.0
OG1 B:THR152 4.3 69.3 1.0
C B:CYS149 4.4 71.1 1.0
N B:ARG150 4.4 71.0 1.0
CB B:CYS151 4.5 70.0 1.0
N B:CYS151 4.5 70.0 1.0
SG B:CYS151 4.6 70.0 1.0
O B:LEU148 4.6 70.8 1.0
N B:THR152 4.6 69.3 1.0
N B:CYS149 4.9 71.1 1.0
C B:CYS117 4.9 62.0 1.0
CB B:THR152 5.0 69.3 1.0
CA B:CYS151 5.0 70.0 1.0

Iron binding site 2 out of 8 in 8emt

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Iron binding site 2 out of 8 in the Cryo-Em Analysis of the Human Aldehyde Oxidase From Liver


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Cryo-Em Analysis of the Human Aldehyde Oxidase From Liver within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe3001

b:72.3
occ:1.00
 FE2 B:FES3001 0.0 72.3 1.0
S2 B:FES3001 2.2 72.3 1.0
S1 B:FES3001 2.2 72.3 1.0
SG B:CYS151 2.3 70.0 1.0
FE1 B:FES3001 2.7 72.3 1.0
CB B:CYS114 3.1 57.2 1.0
CB B:CYS151 3.1 70.0 1.0
N B:CYS151 3.9 70.0 1.0
SG B:CYS114 3.9 57.2 1.0
SG B:CYS149 4.1 71.1 1.0
CA B:CYS151 4.2 70.0 1.0
N B:CYS114 4.2 57.2 1.0
CA B:CYS114 4.2 57.2 1.0
N B:ARG150 4.5 71.0 1.0
N B:GLY115 4.7 56.5 1.0
C B:ARG150 4.8 71.0 1.0
SG B:CYS117 4.8 62.0 1.0
C B:CYS114 4.8 57.2 1.0
CB B:CYS117 4.8 62.0 1.0
N B:PHE116 4.9 52.3 1.0
CG B:MET753 4.9 66.8 1.0

Iron binding site 3 out of 8 in 8emt

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Iron binding site 3 out of 8 in the Cryo-Em Analysis of the Human Aldehyde Oxidase From Liver


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Cryo-Em Analysis of the Human Aldehyde Oxidase From Liver within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe3002

b:71.0
occ:1.00
 FE1 B:FES3002 0.0 71.0 1.0
S1 B:FES3002 2.2 71.0 1.0
S2 B:FES3002 2.2 71.0 1.0
SG B:CYS49 2.3 67.7 1.0
SG B:CYS44 2.3 68.5 1.0
FE2 B:FES3002 2.7 71.0 1.0
N B:CYS44 2.8 68.5 1.0
CB B:CYS44 3.2 68.5 1.0
N B:GLY45 3.2 70.6 1.0
CB B:CYS49 3.3 67.7 1.0
CA B:CYS44 3.3 68.5 1.0
C B:CYS44 3.6 68.5 1.0
N B:CYS49 3.7 67.7 1.0
C B:GLY43 3.8 71.1 1.0
SG B:CYS74 3.8 66.9 1.0
CA B:CYS49 4.0 67.7 1.0
CA B:GLY43 4.1 71.1 1.0
N B:GLY50 4.2 62.9 1.0
N B:GLY47 4.2 67.3 1.0
N B:GLY46 4.3 68.0 1.0
CA B:GLY45 4.3 70.6 1.0
N B:GLY43 4.3 71.1 1.0
N B:GLY48 4.5 69.9 1.0
C B:CYS49 4.6 67.7 1.0
CA B:GLY47 4.6 67.3 1.0
C B:GLY47 4.7 67.3 1.0
C B:GLY45 4.7 70.6 1.0
O B:CYS44 4.8 68.5 1.0
SG B:CYS52 4.8 58.9 1.0
N B:ALA51 4.8 61.7 1.0
O B:GLY43 4.8 71.1 1.0
C B:GLY48 4.8 69.9 1.0
CB B:CYS74 4.9 66.9 1.0

Iron binding site 4 out of 8 in 8emt

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Iron binding site 4 out of 8 in the Cryo-Em Analysis of the Human Aldehyde Oxidase From Liver


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Cryo-Em Analysis of the Human Aldehyde Oxidase From Liver within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe3002

b:71.0
occ:1.00
 FE2 B:FES3002 0.0 71.0 1.0
S2 B:FES3002 2.2 71.0 1.0
S1 B:FES3002 2.2 71.0 1.0
SG B:CYS52 2.3 58.9 1.0
SG B:CYS74 2.3 66.9 1.0
FE1 B:FES3002 2.7 71.0 1.0
CB B:CYS74 3.0 66.9 1.0
CB B:CYS52 3.5 58.9 1.0
SG B:CYS49 3.7 67.7 1.0
N B:CYS52 4.1 58.9 1.0
N B:CYS74 4.1 66.9 1.0
CA B:CYS74 4.2 66.9 1.0
N B:GLY45 4.3 70.6 1.0
CA B:CYS52 4.4 58.9 1.0
CB B:ASN72 4.4 60.9 1.0
SG B:CYS44 4.7 68.5 1.0
ND2 B:ASN72 4.7 60.9 1.0
CG B:ASN72 4.7 60.9 1.0
N B:ALA51 4.7 61.7 1.0
N B:CYS44 4.7 68.5 1.0
CA B:GLY45 4.8 70.6 1.0
N B:GLY50 4.9 62.9 1.0
N B:GLY47 4.9 67.3 1.0
N B:GLY43 4.9 71.1 1.0
CD2 B:LEU28 5.0 61.5 1.0

Iron binding site 5 out of 8 in 8emt

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Iron binding site 5 out of 8 in the Cryo-Em Analysis of the Human Aldehyde Oxidase From Liver


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Cryo-Em Analysis of the Human Aldehyde Oxidase From Liver within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe3001

b:61.5
occ:1.00
 FE1 A:FES3001 0.0 61.5 1.0
S1 A:FES3001 2.2 61.5 1.0
S2 A:FES3001 2.2 61.5 1.0
SG A:CYS117 2.3 51.0 1.0
SG A:CYS149 2.3 58.0 1.0
FE2 A:FES3001 2.7 61.5 1.0
SG A:CYS151 2.9 56.1 1.0
CB A:CYS151 3.1 56.1 1.0
CB A:CYS149 3.5 58.0 1.0
N A:CYS151 3.7 56.1 1.0
CB A:CYS114 3.9 52.9 1.0
CA A:CYS149 3.9 58.0 1.0
CB A:CYS117 3.9 51.0 1.0
CA A:CYS151 4.0 56.1 1.0
CG2 A:THR152 4.2 57.4 1.0
N A:ARG150 4.3 54.0 1.0
N A:THR152 4.3 57.4 1.0
C A:CYS149 4.4 58.0 1.0
N A:CYS114 4.7 52.9 1.0
C A:CYS151 4.7 56.1 1.0
C A:ARG150 4.9 54.0 1.0
CA A:CYS114 4.9 52.9 1.0
N A:CYS117 4.9 51.0 1.0
CE A:MET121 4.9 56.8 1.0
CA A:CYS117 4.9 51.0 1.0
SG A:CYS114 5.0 52.9 1.0

Iron binding site 6 out of 8 in 8emt

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Iron binding site 6 out of 8 in the Cryo-Em Analysis of the Human Aldehyde Oxidase From Liver


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Cryo-Em Analysis of the Human Aldehyde Oxidase From Liver within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe3001

b:61.5
occ:1.00
 FE2 A:FES3001 0.0 61.5 1.0
CB A:CYS114 1.4 52.9 1.0
S2 A:FES3001 2.2 61.5 1.0
S1 A:FES3001 2.2 61.5 1.0
SG A:CYS114 2.3 52.9 1.0
SG A:CYS151 2.3 56.1 1.0
FE1 A:FES3001 2.7 61.5 1.0
CA A:CYS114 2.8 52.9 1.0
N A:CYS114 3.4 52.9 1.0
C A:CYS114 3.5 52.9 1.0
N A:GLY115 3.5 49.9 1.0
SG A:CYS117 3.6 51.0 1.0
CB A:CYS151 3.6 56.1 1.0
N A:PHE116 4.1 46.7 1.0
N A:CYS117 4.2 51.0 1.0
O A:CYS114 4.4 52.9 1.0
CB A:PHE116 4.5 46.7 1.0
CB A:CYS117 4.6 51.0 1.0
C A:GLN113 4.6 50.3 1.0
CA A:GLY115 4.7 49.9 1.0
CA A:PHE116 4.8 46.7 1.0
C A:GLY115 4.8 49.9 1.0
CA A:CYS151 4.9 56.1 1.0
SG A:CYS149 4.9 58.0 1.0

Iron binding site 7 out of 8 in 8emt

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Iron binding site 7 out of 8 in the Cryo-Em Analysis of the Human Aldehyde Oxidase From Liver


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Cryo-Em Analysis of the Human Aldehyde Oxidase From Liver within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe3002

b:63.4
occ:1.00
 FE1 A:FES3002 0.0 63.4 1.0
S2 A:FES3002 2.2 63.4 1.0
S1 A:FES3002 2.2 63.4 1.0
SG A:CYS44 2.3 62.2 1.0
SG A:CYS49 2.3 59.1 1.0
FE2 A:FES3002 2.7 63.4 1.0
N A:CYS44 3.1 62.2 1.0
N A:CYS49 3.3 59.1 1.0
CB A:CYS44 3.3 62.2 1.0
CB A:CYS49 3.4 59.1 1.0
N A:GLY45 3.4 65.8 1.0
CA A:CYS44 3.6 62.2 1.0
CA A:CYS49 3.8 59.1 1.0
C A:GLY48 4.0 59.6 1.0
C A:CYS44 4.1 62.2 1.0
SG A:CYS74 4.1 63.0 1.0
C A:GLY43 4.1 63.2 1.0
CA A:GLY43 4.3 63.2 1.0
C A:CYS49 4.4 59.1 1.0
N A:GLY50 4.4 56.6 1.0
N A:GLY43 4.5 63.2 1.0
CA A:GLY45 4.5 65.8 1.0
N A:GLY48 4.5 59.6 1.0
CA A:GLY48 4.5 59.6 1.0
C A:GLY47 4.6 61.8 1.0
N A:ALA51 4.6 56.0 1.0
O A:GLY47 4.6 61.8 1.0
O A:GLY48 4.7 59.6 1.0
SG A:CYS52 4.8 55.9 1.0
CB A:ALA51 4.8 56.0 1.0
N A:GLY47 4.8 61.8 1.0

Iron binding site 8 out of 8 in 8emt

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Iron binding site 8 out of 8 in the Cryo-Em Analysis of the Human Aldehyde Oxidase From Liver


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Cryo-Em Analysis of the Human Aldehyde Oxidase From Liver within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe3002

b:63.4
occ:1.00
 FE2 A:FES3002 0.0 63.4 1.0
S1 A:FES3002 2.2 63.4 1.0
S2 A:FES3002 2.2 63.4 1.0
SG A:CYS52 2.3 55.9 1.0
SG A:CYS74 2.3 63.0 1.0
FE1 A:FES3002 2.7 63.4 1.0
CB A:CYS74 3.2 63.0 1.0
CB A:CYS52 3.4 55.9 1.0
N A:CYS52 4.0 55.9 1.0
N A:CYS74 4.2 63.0 1.0
CA A:CYS52 4.3 55.9 1.0
CA A:CYS74 4.3 63.0 1.0
SG A:CYS49 4.5 59.1 1.0
SG A:CYS44 4.5 62.2 1.0
CB A:ASN72 4.5 57.4 1.0
O A:GLY47 4.7 61.8 1.0
N A:GLY45 4.7 65.8 1.0
CG A:ASN72 4.7 57.4 1.0
N A:ALA51 4.8 56.0 1.0
ND2 A:ASN72 4.9 57.4 1.0

Reference:

M.Lyu, C.Su, Z.Zhang, E.W.Yu. Cryo-Em Analysis of the Human Aldehyde Oxidase From Liver To Be Published.
Page generated: Sat Aug 10 01:41:09 2024

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