Iron in PDB 8enn: Homocitrate-Deficient Nitrogenase Mofe-Protein From Azotobacter Vinelandii Nifv Knockout

All present enzymatic activity of Homocitrate-Deficient Nitrogenase Mofe-Protein From Azotobacter Vinelandii Nifv Knockout:
1.18.6.1;

The structure of Homocitrate-Deficient Nitrogenase Mofe-Protein From Azotobacter Vinelandii Nifv Knockout also contains other interesting chemical elements:

Molybdenum

(Mo)

2 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 32;

Binding sites:

The binding sites of Iron atom in the Homocitrate-Deficient Nitrogenase Mofe-Protein From Azotobacter Vinelandii Nifv Knockout (pdb code 8enn). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 32 binding sites of Iron where determined in the Homocitrate-Deficient Nitrogenase Mofe-Protein From Azotobacter Vinelandii Nifv Knockout, PDB code: 8enn:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 32 in the Homocitrate-Deficient Nitrogenase Mofe-Protein From Azotobacter Vinelandii Nifv Knockout


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Homocitrate-Deficient Nitrogenase Mofe-Protein From Azotobacter Vinelandii Nifv Knockout within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe600 b:123.1 occ:1.00 FE1 A:ICS600 0.0 123.1 1.0 SG A:CYS275 2.0 85.8 1.0 S2A A:ICS600 2.3 105.5 1.0 S4A A:ICS600 2.3 107.0 1.0 S1A A:ICS600 2.3 105.5 1.0 FE4 A:ICS600 2.6 115.7 1.0 FE3 A:ICS600 2.7 110.1 1.0 FE2 A:ICS600 2.7 116.0 1.0 CB A:CYS275 3.2 67.4 1.0 CX A:ICS600 3.4 107.0 1.0 OG A:SER278 3.9 68.9 1.0 CB A:LEU358 4.1 87.8 1.0 CB A:SER278 4.2 64.4 1.0 CA A:CYS275 4.4 65.0 1.0 CE2 A:TYR229 4.6 49.2 1.0 N A:SER278 4.7 67.3 1.0 N A:LEU358 4.7 91.7 1.0 S3A A:ICS600 4.8 107.9 1.0 S5A A:ICS600 4.8 105.9 1.0 S2B A:ICS600 4.8 101.7 1.0 CB A:ARG277 4.9 79.0 1.0 CD2 A:LEU358 5.0 88.7 1.0 FE7 A:ICS600 5.0 109.7 1.0 FE5 A:ICS600 5.0 119.5 1.0

Iron binding site 2 out of 32 in the Homocitrate-Deficient Nitrogenase Mofe-Protein From Azotobacter Vinelandii Nifv Knockout


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Homocitrate-Deficient Nitrogenase Mofe-Protein From Azotobacter Vinelandii Nifv Knockout within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe600 b:116.0 occ:1.00 FE2 A:ICS600 0.0 116.0 1.0 CX A:ICS600 2.0 107.0 1.0 S2B A:ICS600 2.2 101.7 1.0 S2A A:ICS600 2.2 105.5 1.0 S1A A:ICS600 2.3 105.5 1.0 FE6 A:ICS600 2.6 116.1 1.0 FE4 A:ICS600 2.7 115.7 1.0 FE3 A:ICS600 2.7 110.1 1.0 FE1 A:ICS600 2.7 123.1 1.0 FE5 A:ICS600 3.7 119.5 1.0 FE7 A:ICS600 3.7 109.7 1.0 NE2 A:HIS195 3.8 50.5 1.0 CZ A:PHE381 3.8 91.6 1.0 S4A A:ICS600 3.9 107.0 1.0 S1B A:ICS600 4.2 106.6 1.0 S3B A:ICS600 4.3 103.5 1.0 CE1 A:HIS195 4.3 52.8 1.0 S3A A:ICS600 4.5 107.9 1.0 SG A:CYS275 4.5 85.8 1.0 S5A A:ICS600 4.5 105.9 1.0 CG1 A:VAL70 4.6 43.4 1.0 CE2 A:PHE381 4.6 90.4 1.0 CE1 A:PHE381 4.7 91.9 1.0 CD2 A:HIS195 4.7 48.0 1.0 CG2 A:VAL70 4.9 45.3 1.0 N A:GLY357 4.9 99.1 1.0 NH2 A:ARG96 5.0 60.0 1.0

Iron binding site 3 out of 32 in the Homocitrate-Deficient Nitrogenase Mofe-Protein From Azotobacter Vinelandii Nifv Knockout


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Homocitrate-Deficient Nitrogenase Mofe-Protein From Azotobacter Vinelandii Nifv Knockout within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe600 b:110.1 occ:1.00 FE3 A:ICS600 0.0 110.1 1.0 CX A:ICS600 2.0 107.0 1.0 S5A A:ICS600 2.2 105.9 1.0 S4A A:ICS600 2.2 107.0 1.0 S2A A:ICS600 2.3 105.5 1.0 FE7 A:ICS600 2.6 109.7 1.0 FE4 A:ICS600 2.6 115.7 1.0 FE1 A:ICS600 2.7 123.1 1.0 FE2 A:ICS600 2.7 116.0 1.0 FE6 A:ICS600 3.7 116.1 1.0 FE5 A:ICS600 3.7 119.5 1.0 NH2 A:ARG96 3.8 60.0 1.0 S1A A:ICS600 3.9 105.5 1.0 CD2 A:TYR229 4.1 51.7 1.0 S4B A:ICS600 4.2 111.4 1.0 S3B A:ICS600 4.2 103.5 1.0 CE2 A:TYR229 4.3 49.2 1.0 SG A:CYS275 4.5 85.8 1.0 S2B A:ICS600 4.5 101.7 1.0 S3A A:ICS600 4.5 107.9 1.0 CB A:CYS275 4.9 67.4 1.0 NE A:ARG359 4.9 82.2 1.0 CZ A:ARG96 5.0 60.1 1.0

Iron binding site 4 out of 32 in the Homocitrate-Deficient Nitrogenase Mofe-Protein From Azotobacter Vinelandii Nifv Knockout


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Homocitrate-Deficient Nitrogenase Mofe-Protein From Azotobacter Vinelandii Nifv Knockout within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe600 b:115.7 occ:1.00 FE4 A:ICS600 0.0 115.7 1.0 CX A:ICS600 2.0 107.0 1.0 S3A A:ICS600 2.2 107.9 1.0 S4A A:ICS600 2.3 107.0 1.0 S1A A:ICS600 2.3 105.5 1.0 FE5 A:ICS600 2.6 119.5 1.0 FE3 A:ICS600 2.6 110.1 1.0 FE1 A:ICS600 2.6 123.1 1.0 FE2 A:ICS600 2.7 116.0 1.0 FE7 A:ICS600 3.7 109.7 1.0 FE6 A:ICS600 3.7 116.1 1.0 N A:LEU358 3.7 91.7 1.0 S2A A:ICS600 3.8 105.5 1.0 N A:GLY357 3.8 99.1 1.0 CB A:LEU358 4.1 87.8 1.0 S4B A:ICS600 4.2 111.4 1.0 S1B A:ICS600 4.3 106.6 1.0 SG A:CYS275 4.4 85.8 1.0 CA A:GLY357 4.5 98.4 1.0 CA A:LEU358 4.5 91.5 1.0 S5A A:ICS600 4.5 105.9 1.0 C A:GLY357 4.5 100.8 1.0 S2B A:ICS600 4.5 101.7 1.0 N A:ARG359 4.5 88.6 1.0 CD A:ARG359 4.7 84.2 1.0 C A:GLY356 4.8 97.1 1.0 CA A:GLY356 4.9 95.4 1.0 NE A:ARG359 4.9 82.2 1.0

Iron binding site 5 out of 32 in the Homocitrate-Deficient Nitrogenase Mofe-Protein From Azotobacter Vinelandii Nifv Knockout


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Homocitrate-Deficient Nitrogenase Mofe-Protein From Azotobacter Vinelandii Nifv Knockout within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe600 b:119.5 occ:1.00 FE5 A:ICS600 0.0 119.5 1.0 CX A:ICS600 2.0 107.0 1.0 S4B A:ICS600 2.3 111.4 1.0 S3A A:ICS600 2.3 107.9 1.0 S1B A:ICS600 2.3 106.6 1.0 FE4 A:ICS600 2.6 115.7 1.0 FE6 A:ICS600 2.6 116.1 1.0 FE7 A:ICS600 2.6 109.7 1.0 MO1 A:ICS600 2.7 137.5 1.0 FE2 A:ICS600 3.7 116.0 1.0 FE3 A:ICS600 3.7 110.1 1.0 S3B A:ICS600 3.9 103.5 1.0 CG2 A:ILE355 3.9 93.1 1.0 N A:GLY356 4.0 95.3 1.0 ND1 A:HIS442 4.0 85.1 1.0 CE1 A:HIS442 4.0 84.7 1.0 CA A:GLY356 4.2 95.4 1.0 S1A A:ICS600 4.3 105.5 1.0 CD A:ARG359 4.3 84.2 1.0 S4A A:ICS600 4.3 107.0 1.0 S2B A:ICS600 4.5 101.7 1.0 S5A A:ICS600 4.5 105.9 1.0 N A:GLY357 4.5 99.1 1.0 CG A:HIS442 4.7 84.7 1.0 NE2 A:HIS442 4.8 87.7 1.0 NE A:ARG359 4.8 82.2 1.0 NH1 A:ARG359 4.8 88.3 1.0 C A:GLY356 4.9 97.1 1.0 FE1 A:ICS600 5.0 123.1 1.0

Iron binding site 6 out of 32 in the Homocitrate-Deficient Nitrogenase Mofe-Protein From Azotobacter Vinelandii Nifv Knockout


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Homocitrate-Deficient Nitrogenase Mofe-Protein From Azotobacter Vinelandii Nifv Knockout within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe600 b:116.1 occ:1.00 FE6 A:ICS600 0.0 116.1 1.0 CX A:ICS600 2.0 107.0 1.0 S2B A:ICS600 2.2 101.7 1.0 S3B A:ICS600 2.2 103.5 1.0 S1B A:ICS600 2.2 106.6 1.0 FE7 A:ICS600 2.6 109.7 1.0 FE2 A:ICS600 2.6 116.0 1.0 FE5 A:ICS600 2.6 119.5 1.0 MO1 A:ICS600 2.7 137.5 1.0 FE3 A:ICS600 3.7 110.1 1.0 FE4 A:ICS600 3.7 115.7 1.0 S4B A:ICS600 3.8 111.4 1.0 S2A A:ICS600 4.2 105.5 1.0 S1A A:ICS600 4.3 105.5 1.0 OE1 A:GLN191 4.4 63.6 1.0 S5A A:ICS600 4.4 105.9 1.0 CG2 A:VAL70 4.5 45.3 1.0 S3A A:ICS600 4.5 107.9 1.0 ND1 A:HIS442 4.6 85.1 1.0 CZ A:PHE381 4.6 91.6 1.0 CE2 A:PHE381 4.7 90.4 1.0 NH2 A:ARG96 4.7 60.0 1.0 CE1 A:HIS442 4.8 84.7 1.0 NE A:ARG96 4.8 55.7 1.0

Iron binding site 7 out of 32 in the Homocitrate-Deficient Nitrogenase Mofe-Protein From Azotobacter Vinelandii Nifv Knockout


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Homocitrate-Deficient Nitrogenase Mofe-Protein From Azotobacter Vinelandii Nifv Knockout within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe600 b:109.7 occ:1.00 FE7 A:ICS600 0.0 109.7 1.0 CX A:ICS600 2.0 107.0 1.0 S5A A:ICS600 2.2 105.9 1.0 S4B A:ICS600 2.2 111.4 1.0 S3B A:ICS600 2.3 103.5 1.0 FE3 A:ICS600 2.6 110.1 1.0 FE6 A:ICS600 2.6 116.1 1.0 FE5 A:ICS600 2.6 119.5 1.0 MO1 A:ICS600 2.7 137.5 1.0 NH2 A:ARG96 3.6 60.0 1.0 FE4 A:ICS600 3.7 115.7 1.0 FE2 A:ICS600 3.7 116.0 1.0 S1B A:ICS600 3.8 106.6 1.0 NE A:ARG96 4.0 55.7 1.0 S2A A:ICS600 4.3 105.5 1.0 S4A A:ICS600 4.3 107.0 1.0 CZ A:ARG96 4.3 60.1 1.0 NH1 A:ARG359 4.4 88.3 1.0 S2B A:ICS600 4.4 101.7 1.0 CZ A:ARG359 4.4 85.0 1.0 S3A A:ICS600 4.5 107.9 1.0 NE A:ARG359 4.8 82.2 1.0 NH2 A:ARG359 4.8 87.7 1.0 ND1 A:HIS442 4.8 85.1 1.0 O A:HIS442 4.9 80.7 1.0 FE1 A:ICS600 5.0 123.1 1.0

Iron binding site 8 out of 32 in the Homocitrate-Deficient Nitrogenase Mofe-Protein From Azotobacter Vinelandii Nifv Knockout


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Homocitrate-Deficient Nitrogenase Mofe-Protein From Azotobacter Vinelandii Nifv Knockout within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe601 b:68.2 occ:1.00 FE1 B:CLF601 0.0 68.2 1.0 SG A:CYS154 2.3 41.8 1.0 S2A B:CLF601 2.3 39.9 1.0 S3A B:CLF601 2.3 47.6 1.0 S1 B:CLF601 2.4 53.4 1.0 FE2 B:CLF601 2.5 73.8 1.0 FE4 B:CLF601 2.6 62.9 1.0 FE3 B:CLF601 2.8 60.5 1.0 CB A:CYS154 3.3 19.7 1.0 O B:HOH784 3.8 45.4 1.0 S4A B:CLF601 3.8 39.1 1.0 N A:CYS154 3.8 40.2 1.0 CA A:GLY185 3.9 35.1 1.0 SG B:CYS95 3.9 38.3 1.0 N A:GLY185 4.0 36.6 1.0 CA A:CYS154 4.1 33.7 1.0 FE8 B:CLF601 4.4 65.1 1.0 SG A:CYS88 4.4 50.4 1.0 SG B:CYS153 4.6 48.9 1.0 CB B:SER92 4.6 39.3 1.0 FE5 B:CLF601 4.7 68.1 1.0 C A:GLY185 4.7 40.2 1.0 OG B:SER92 4.8 46.1 1.0 N A:PHE186 4.8 43.1 1.0 FE6 B:CLF601 4.9 68.7 1.0 SG A:CYS62 4.9 33.8 1.0 C A:GLU153 4.9 34.1 1.0

Iron binding site 9 out of 32 in the Homocitrate-Deficient Nitrogenase Mofe-Protein From Azotobacter Vinelandii Nifv Knockout


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Homocitrate-Deficient Nitrogenase Mofe-Protein From Azotobacter Vinelandii Nifv Knockout within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe601 b:73.8 occ:1.00 FE2 B:CLF601 0.0 73.8 1.0 SG B:CYS95 2.1 38.3 1.0 S4A B:CLF601 2.3 39.1 1.0 S2A B:CLF601 2.3 39.9 1.0 S1 B:CLF601 2.5 53.4 1.0 FE1 B:CLF601 2.5 68.2 1.0 FE4 B:CLF601 2.6 62.9 1.0 FE3 B:CLF601 2.7 60.5 1.0 FE8 B:CLF601 3.0 65.1 1.0 N B:CYS95 3.2 39.1 1.0 CB B:CYS95 3.3 24.4 1.0 CA B:CYS95 3.4 26.1 1.0 S3A B:CLF601 3.8 47.6 1.0 FE5 B:CLF601 3.8 68.1 1.0 C B:GLY94 3.9 31.1 1.0 S4B B:CLF601 4.0 27.7 1.0 SG A:CYS88 4.3 50.4 1.0 O B:HOH784 4.4 45.4 1.0 SG A:CYS154 4.5 41.8 1.0 CA B:GLY94 4.6 14.3 1.0 O B:GLY94 4.6 40.8 1.0 FE6 B:CLF601 4.6 68.7 1.0 SG A:CYS62 4.6 33.8 1.0 CB B:SER92 4.8 39.3 1.0 C B:CYS95 4.9 24.8 1.0 N B:GLY94 5.0 27.7 1.0

Iron binding site 10 out of 32 in the Homocitrate-Deficient Nitrogenase Mofe-Protein From Azotobacter Vinelandii Nifv Knockout


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Homocitrate-Deficient Nitrogenase Mofe-Protein From Azotobacter Vinelandii Nifv Knockout within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe601 b:60.5 occ:1.00 FE3 B:CLF601 0.0 60.5 1.0 S4A B:CLF601 2.3 39.1 1.0 S2A B:CLF601 2.3 39.9 1.0 SG A:CYS62 2.3 33.8 1.0 S3A B:CLF601 2.3 47.6 1.0 FE4 B:CLF601 2.7 62.9 1.0 FE2 B:CLF601 2.7 73.8 1.0 FE1 B:CLF601 2.8 68.2 1.0 CB A:CYS62 3.3 46.4 1.0 CA A:GLY185 3.7 35.1 1.0 CB A:TYR64 3.8 40.0 1.0 S1 B:CLF601 4.2 53.4 1.0 CD2 A:TYR64 4.3 37.8 1.0 N A:GLY185 4.4 36.6 1.0 CG A:TYR64 4.4 39.4 1.0 CA B:GLY94 4.5 14.3 1.0 C B:GLY94 4.6 31.1 1.0 N B:CYS95 4.6 39.1 1.0 SG A:CYS154 4.7 41.8 1.0 CA A:CYS62 4.7 37.8 1.0 SG A:CYS88 4.8 50.4 1.0 N A:TYR64 4.8 30.6 1.0 SG B:CYS95 4.8 38.3 1.0 C A:GLY185 4.9 40.2 1.0 CA A:TYR64 4.9 40.0 1.0 CE2 B:TYR98 4.9 28.6 1.0 O B:HOH846 4.9 41.9 1.0

R.A.Warmack, A.O.Maggiolo, A.Orta, B.B.Wenke, J.B.Howard, D.C.Rees. Structural Consequences of Turnover-Induced Homocitrate Loss in Nitrogenase. Nat Commun V. 14 1091 2023.
ISSN: ESSN 2041-1723
PubMed: 36841829
DOI: 10.1038/S41467-023-36636-4