Atomistry » Iron » PDB 8ess-8f9i » 8f4c
Atomistry »
  Iron »
    PDB 8ess-8f9i »
      8f4c »

Iron in PDB 8f4c: Rt Xfel Structure of the Two-Flash State of Photosystem II (2F, S3- Rich) at 2.00 Angstrom Resolution

Enzymatic activity of Rt Xfel Structure of the Two-Flash State of Photosystem II (2F, S3- Rich) at 2.00 Angstrom Resolution

All present enzymatic activity of Rt Xfel Structure of the Two-Flash State of Photosystem II (2F, S3- Rich) at 2.00 Angstrom Resolution:
1.10.3.9;

Protein crystallography data

The structure of Rt Xfel Structure of the Two-Flash State of Photosystem II (2F, S3- Rich) at 2.00 Angstrom Resolution, PDB code: 8f4c was solved by A.Bhowmick, R.Hussein, I.Bogacz, P.S.Simon, M.Ibrahim, R.Chatterjee, M.D.Doyle, M.H.Cheah, T.Fransson, P.Chernev, I.-S.Kim, H.Makita, M.Dasgupta, C.J.Kaminsky, M.Zhang, J.Gatcke, S.Haupt, I.I.Nangca, S.M.Keable, O.Aydin, K.Tono, S.Owada, L.B.Gee, F.D.Fuller, A.Batyuk, R.Alonso-Mori, J.M.Holton, D.W.Paley, N.W.Moriarty, F.Mamedov, P.D.Adams, A.S.Brewster, H.Dobbek, N.K.Sauter, U.Bergmann, A.Zouni, J.Messinger, J.Kern, J.Yano, V.K.Yachandra, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.80 / 2.00
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 117.328, 222.786, 309.116, 90, 90, 90
R / Rfree (%) 18 / 22.4

Other elements in 8f4c:

The structure of Rt Xfel Structure of the Two-Flash State of Photosystem II (2F, S3- Rich) at 2.00 Angstrom Resolution also contains other interesting chemical elements:

Chlorine (Cl) 4 atoms
Manganese (Mn) 16 atoms
Magnesium (Mg) 70 atoms
Calcium (Ca) 4 atoms

Iron Binding Sites:

The binding sites of Iron atom in the Rt Xfel Structure of the Two-Flash State of Photosystem II (2F, S3- Rich) at 2.00 Angstrom Resolution (pdb code 8f4c). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 6 binding sites of Iron where determined in the Rt Xfel Structure of the Two-Flash State of Photosystem II (2F, S3- Rich) at 2.00 Angstrom Resolution, PDB code: 8f4c:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6;

Iron binding site 1 out of 6 in 8f4c

Go back to Iron Binding Sites List in 8f4c
Iron binding site 1 out of 6 in the Rt Xfel Structure of the Two-Flash State of Photosystem II (2F, S3- Rich) at 2.00 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Rt Xfel Structure of the Two-Flash State of Photosystem II (2F, S3- Rich) at 2.00 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe603

b:27.5
occ:1.00
 NE2 A:HIS215 2.1 29.4 1.0
O2 D:BCT401 2.1 32.8 1.0
O1 D:BCT401 2.2 29.4 1.0
NE2 D:HIS214 2.2 30.4 1.0
NE2 D:HIS268 2.3 30.2 1.0
NE2 A:HIS272 2.3 30.1 1.0
C D:BCT401 2.4 34.9 1.0
CE1 D:HIS214 3.0 29.2 1.0
CE1 A:HIS215 3.1 28.4 1.0
CD2 A:HIS215 3.2 29.6 1.0
CE1 A:HIS272 3.2 27.6 1.0
CE1 D:HIS268 3.2 27.4 1.0
CD2 D:HIS268 3.3 29.2 1.0
CD2 A:HIS272 3.3 29.7 1.0
CD2 D:HIS214 3.3 23.9 1.0
O3 D:BCT401 3.8 35.4 1.0
ND1 A:HIS215 4.2 25.5 1.0
ND1 D:HIS214 4.2 28.3 1.0
CG A:HIS215 4.3 26.3 1.0
ND1 D:HIS268 4.3 26.3 1.0
ND1 A:HIS272 4.3 28.0 1.0
CG D:HIS214 4.4 28.1 1.0
CG D:HIS268 4.4 28.8 1.0
CG A:HIS272 4.4 31.5 1.0
CG2 A:VAL219 4.8 29.7 1.0
OH D:TYR244 4.9 32.5 1.0
CG2 D:VAL218 4.9 25.4 1.0

Iron binding site 2 out of 6 in 8f4c

Go back to Iron Binding Sites List in 8f4c
Iron binding site 2 out of 6 in the Rt Xfel Structure of the Two-Flash State of Photosystem II (2F, S3- Rich) at 2.00 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Rt Xfel Structure of the Two-Flash State of Photosystem II (2F, S3- Rich) at 2.00 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Fe101

b:47.2
occ:1.00
 FE F:HEM101 0.0 47.2 1.0
ND F:HEM101 2.0 42.5 1.0
NC F:HEM101 2.0 44.2 1.0
NB F:HEM101 2.1 39.5 1.0
NE2 E:HIS23 2.1 46.1 1.0
NA F:HEM101 2.1 45.6 1.0
NE2 F:HIS24 2.1 43.3 1.0
CD2 F:HIS24 2.9 40.8 1.0
C4D F:HEM101 3.0 45.9 1.0
C1D F:HEM101 3.0 44.2 1.0
CE1 E:HIS23 3.0 49.8 1.0
C1A F:HEM101 3.0 47.8 1.0
C1C F:HEM101 3.0 40.5 1.0
C4B F:HEM101 3.0 41.3 1.0
C4C F:HEM101 3.0 42.7 1.0
CD2 E:HIS23 3.1 46.9 1.0
C1B F:HEM101 3.1 46.1 1.0
C4A F:HEM101 3.1 42.7 1.0
CE1 F:HIS24 3.3 44.2 1.0
CHA F:HEM101 3.4 44.7 1.0
CHD F:HEM101 3.4 41.4 1.0
CHC F:HEM101 3.4 41.2 1.0
CHB F:HEM101 3.5 44.3 1.0
CG F:HIS24 4.1 42.6 1.0
ND1 E:HIS23 4.1 49.8 1.0
C3D F:HEM101 4.2 45.2 1.0
C2D F:HEM101 4.2 43.8 1.0
CG E:HIS23 4.2 50.4 1.0
C2A F:HEM101 4.2 49.1 1.0
ND1 F:HIS24 4.2 45.3 1.0
C2C F:HEM101 4.2 44.9 1.0
C3C F:HEM101 4.3 39.8 1.0
C3B F:HEM101 4.3 43.7 1.0
C3A F:HEM101 4.3 48.3 1.0
C2B F:HEM101 4.3 43.7 1.0
CD1 E:ILE22 4.5 49.3 0.1
NE1 F:TRP20 4.8 44.9 1.0

Iron binding site 3 out of 6 in 8f4c

Go back to Iron Binding Sites List in 8f4c
Iron binding site 3 out of 6 in the Rt Xfel Structure of the Two-Flash State of Photosystem II (2F, S3- Rich) at 2.00 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Rt Xfel Structure of the Two-Flash State of Photosystem II (2F, S3- Rich) at 2.00 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
V:Fe201

b:31.6
occ:1.00
 FE V:HEC201 0.0 31.6 1.0
NA V:HEC201 2.0 28.1 1.0
NB V:HEC201 2.0 29.1 1.0
NC V:HEC201 2.1 28.7 1.0
ND V:HEC201 2.1 29.7 1.0
NE2 V:HIS92 2.1 34.3 1.0
NE2 V:HIS41 2.1 30.9 1.0
CD2 V:HIS41 3.0 27.1 1.0
C4A V:HEC201 3.0 31.3 1.0
C1B V:HEC201 3.0 28.9 1.0
CD2 V:HIS92 3.0 33.8 1.0
C1A V:HEC201 3.0 32.6 1.0
CE1 V:HIS92 3.0 28.8 1.0
C4C V:HEC201 3.1 27.9 1.0
C1D V:HEC201 3.1 28.7 1.0
C4D V:HEC201 3.1 33.5 1.0
C1C V:HEC201 3.1 31.5 1.0
C4B V:HEC201 3.1 28.9 1.0
CE1 V:HIS41 3.2 30.0 1.0
CHB V:HEC201 3.4 31.6 1.0
CHD V:HEC201 3.4 25.5 1.0
CHA V:HEC201 3.4 29.1 1.0
CHC V:HEC201 3.5 27.4 1.0
ND1 V:HIS92 4.1 30.4 1.0
CG V:HIS92 4.1 35.2 1.0
CG V:HIS41 4.2 30.9 1.0
C3A V:HEC201 4.2 30.6 1.0
C2A V:HEC201 4.2 30.2 1.0
ND1 V:HIS41 4.2 32.6 1.0
C2B V:HEC201 4.3 31.8 1.0
C3C V:HEC201 4.3 29.8 1.0
C3D V:HEC201 4.3 27.3 1.0
C3B V:HEC201 4.3 28.0 1.0
C2C V:HEC201 4.3 30.2 1.0
C2D V:HEC201 4.3 25.9 1.0
CE1 V:TYR75 4.9 30.4 1.0

Iron binding site 4 out of 6 in 8f4c

Go back to Iron Binding Sites List in 8f4c
Iron binding site 4 out of 6 in the Rt Xfel Structure of the Two-Flash State of Photosystem II (2F, S3- Rich) at 2.00 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Rt Xfel Structure of the Two-Flash State of Photosystem II (2F, S3- Rich) at 2.00 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
a:Fe603

b:33.8
occ:1.00
 NE2 a:HIS215 2.1 31.6 1.0
O1 a:BCT606 2.2 35.4 1.0
NE2 d:HIS214 2.2 31.0 1.0
O2 a:BCT606 2.2 32.3 1.0
NE2 d:HIS268 2.3 36.7 1.0
NE2 a:HIS272 2.3 39.1 1.0
C a:BCT606 2.4 39.5 1.0
CE1 a:HIS215 3.0 35.0 1.0
CE1 a:HIS272 3.1 35.4 1.0
CE1 d:HIS214 3.1 30.5 1.0
CE1 d:HIS268 3.2 33.4 1.0
CD2 a:HIS215 3.2 33.1 1.0
CD2 d:HIS214 3.2 29.3 1.0
CD2 d:HIS268 3.3 29.3 1.0
CD2 a:HIS272 3.4 28.5 1.0
O3 a:BCT606 3.9 44.3 1.0
ND1 a:HIS215 4.2 33.0 1.0
ND1 a:HIS272 4.3 36.3 1.0
CG a:HIS215 4.3 27.5 1.0
ND1 d:HIS214 4.3 32.0 1.0
ND1 d:HIS268 4.3 35.2 1.0
CG d:HIS214 4.3 29.5 1.0
CG d:HIS268 4.4 33.1 1.0
CG a:HIS272 4.4 35.5 1.0
CG2 a:VAL219 4.7 35.6 1.0

Iron binding site 5 out of 6 in 8f4c

Go back to Iron Binding Sites List in 8f4c
Iron binding site 5 out of 6 in the Rt Xfel Structure of the Two-Flash State of Photosystem II (2F, S3- Rich) at 2.00 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Rt Xfel Structure of the Two-Flash State of Photosystem II (2F, S3- Rich) at 2.00 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
f:Fe101

b:53.2
occ:1.00
 FE f:HEM101 0.0 53.2 1.0
NC f:HEM101 2.0 47.3 1.0
ND f:HEM101 2.0 49.6 1.0
NB f:HEM101 2.1 50.8 1.0
NE2 e:HIS23 2.1 55.4 1.0
NE2 f:HIS24 2.1 52.9 1.0
NA f:HEM101 2.1 52.0 1.0
C4C f:HEM101 2.9 46.6 1.0
C1D f:HEM101 3.0 51.3 1.0
CD2 e:HIS23 3.0 55.3 1.0
C1C f:HEM101 3.0 49.6 1.0
C4D f:HEM101 3.0 51.8 1.0
CE1 f:HIS24 3.1 47.8 1.0
C4B f:HEM101 3.1 53.7 1.0
C1A f:HEM101 3.1 55.3 1.0
C1B f:HEM101 3.1 52.5 1.0
CD2 f:HIS24 3.1 49.2 1.0
C4A f:HEM101 3.1 52.5 1.0
CE1 e:HIS23 3.2 56.9 1.0
CHD f:HEM101 3.3 50.6 1.0
CHC f:HEM101 3.4 52.9 1.0
CHA f:HEM101 3.5 53.6 1.0
CHB f:HEM101 3.5 56.1 1.0
C2D f:HEM101 4.1 50.4 1.0
C3D f:HEM101 4.2 53.3 1.0
CG e:HIS23 4.2 58.7 1.0
ND1 f:HIS24 4.2 51.3 1.0
C3C f:HEM101 4.2 49.3 1.0
ND1 e:HIS23 4.2 58.2 1.0
C2C f:HEM101 4.2 50.8 1.0
CG f:HIS24 4.2 53.0 1.0
C2A f:HEM101 4.3 57.2 1.0
C2B f:HEM101 4.3 55.2 1.0
C3B f:HEM101 4.3 53.0 1.0
C3A f:HEM101 4.3 60.0 1.0
NE1 f:TRP20 4.9 52.7 1.0
CE1 e:TYR19 5.0 59.2 1.0

Iron binding site 6 out of 6 in 8f4c

Go back to Iron Binding Sites List in 8f4c
Iron binding site 6 out of 6 in the Rt Xfel Structure of the Two-Flash State of Photosystem II (2F, S3- Rich) at 2.00 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Rt Xfel Structure of the Two-Flash State of Photosystem II (2F, S3- Rich) at 2.00 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
v:Fe201

b:34.7
occ:1.00
 FE v:HEC201 0.0 34.7 1.0
ND v:HEC201 2.0 33.0 1.0
NB v:HEC201 2.0 30.6 1.0
NC v:HEC201 2.0 35.3 1.0
NE2 v:HIS41 2.1 32.9 1.0
NE2 v:HIS92 2.1 37.0 1.0
NA v:HEC201 2.1 34.3 1.0
CD2 v:HIS92 2.9 31.9 1.0
C1D v:HEC201 3.0 31.4 1.0
CE1 v:HIS41 3.0 33.3 1.0
C4C v:HEC201 3.0 33.1 1.0
C1B v:HEC201 3.0 33.9 1.0
C4D v:HEC201 3.0 33.4 1.0
C4B v:HEC201 3.1 32.1 1.0
CD2 v:HIS41 3.1 30.6 1.0
C1C v:HEC201 3.1 32.8 1.0
C4A v:HEC201 3.1 32.2 1.0
C1A v:HEC201 3.1 32.0 1.0
CE1 v:HIS92 3.2 31.7 1.0
CHD v:HEC201 3.3 29.6 1.0
CHB v:HEC201 3.4 34.9 1.0
CHC v:HEC201 3.5 33.9 1.0
CHA v:HEC201 3.5 31.8 1.0
ND1 v:HIS41 4.1 33.2 1.0
CG v:HIS92 4.1 37.4 1.0
CG v:HIS41 4.2 34.5 1.0
C2D v:HEC201 4.2 30.0 1.0
ND1 v:HIS92 4.2 37.5 1.0
C3D v:HEC201 4.2 32.6 1.0
C3C v:HEC201 4.3 33.5 1.0
C2B v:HEC201 4.3 35.1 1.0
C2C v:HEC201 4.3 34.9 1.0
C3B v:HEC201 4.3 31.3 1.0
C3A v:HEC201 4.4 37.0 1.0
C2A v:HEC201 4.4 30.7 1.0
CE1 v:TYR75 4.9 34.5 1.0

Reference:

A.Bhowmick, R.Hussein, I.Bogacz, P.S.Simon, M.Ibrahim, R.Chatterjee, M.D.Doyle, M.H.Cheah, T.Fransson, P.Chernev, I.-S.Kim, H.Makita, M.Dasgupta, C.J.Kaminsky, M.Zhang, J.Gatcke, S.Haupt, I.I.Nangca, S.M.Keable, O.Aydin, K.Tono, S.Owada, L.B.Gee, F.D.Fuller, A.Batyuk, R.Alonso-Mori, J.M.Holton, D.W.Paley, N.W.Moriarty, F.Mamedov, P.D.Adams, A.S.Brewster, H.Dobbek, N.K.Sauter, U.Bergmann, A.Zouni, J.Messinger, J.Kern, J.Yano, V.K.Yachandra. Structural Evidence For Intermediates During O2 Formation in Photosystem II To Be Published.
Page generated: Sat Aug 10 02:29:37 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy