Iron in PDB 8gm3: Vibrio Harveyi Holo Hpha

The structure of Vibrio Harveyi Holo Hpha, PDB code: 8gm3 was solved by C.Pan, M.Shah, T.F.Moraes, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	69.59 / 1.73
Space group	P 2 21 21
Cell size a, b, c (Å), α, β, γ (°)	39.438, 81.08, 135.577, 90, 90, 90
R / Rfree (%)	21 / 25.5

The binding sites of Iron atom in the Vibrio Harveyi Holo Hpha (pdb code 8gm3). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Vibrio Harveyi Holo Hpha, PDB code: 8gm3:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in the Vibrio Harveyi Holo Hpha


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Vibrio Harveyi Holo Hpha within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe301 b:16.8 occ:1.00 FE A:HEB301 0.0 16.8 1.0 NC A:HEB301 2.0 15.6 1.0 ND A:HEB301 2.0 15.3 1.0 NA A:HEB301 2.0 16.2 1.0 NB A:HEB301 2.1 16.5 1.0 NE2 A:HIS64 2.1 14.7 1.0 NE2 A:HIS25 2.2 14.3 1.0 C1C A:HEB301 3.0 19.7 1.0 C1A A:HEB301 3.0 15.7 1.0 CD2 A:HIS64 3.0 17.0 1.0 C4C A:HEB301 3.0 16.4 1.0 C4D A:HEB301 3.0 15.0 1.0 C1D A:HEB301 3.0 17.4 1.0 CD2 A:HIS25 3.0 17.4 1.0 C4B A:HEB301 3.1 18.0 1.0 C4A A:HEB301 3.1 17.4 1.0 C1B A:HEB301 3.1 14.3 1.0 CE1 A:HIS64 3.2 17.9 1.0 CE1 A:HIS25 3.3 19.0 1.0 CHA A:HEB301 3.4 14.9 1.0 CHC A:HEB301 3.4 20.0 1.0 CHD A:HEB301 3.4 17.6 1.0 CHB A:HEB301 3.5 18.1 1.0 CG A:HIS64 4.2 14.8 1.0 C2C A:HEB301 4.2 19.5 1.0 C3C A:HEB301 4.2 18.9 1.0 ND1 A:HIS64 4.2 16.7 1.0 C2D A:HEB301 4.2 16.5 1.0 C3D A:HEB301 4.3 14.2 1.0 C2A A:HEB301 4.3 17.5 1.0 CG A:HIS25 4.3 15.4 1.0 C3A A:HEB301 4.3 16.2 1.0 C3B A:HEB301 4.3 21.0 1.0 C2B A:HEB301 4.3 19.8 1.0 ND1 A:HIS25 4.3 17.8 1.0 HHA A:HEB301 4.4 17.9 1.0 HHC A:HEB301 4.4 24.0 1.0 HHD A:HEB301 4.4 21.1 1.0 HHB A:HEB301 4.5 21.7 1.0 CG1 A:VAL40 4.8 16.0 1.0

Iron binding site 2 out of 2 in the Vibrio Harveyi Holo Hpha


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Vibrio Harveyi Holo Hpha within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe301 b:15.7 occ:1.00 FE B:HEB301 0.0 15.7 1.0 NA B:HEB301 2.0 14.8 1.0 ND B:HEB301 2.0 16.1 1.0 NC B:HEB301 2.0 16.8 1.0 NB B:HEB301 2.1 17.4 1.0 NE2 B:HIS64 2.1 17.3 1.0 NE2 B:HIS25 2.2 16.1 1.0 C1A B:HEB301 3.0 15.8 1.0 C4D B:HEB301 3.0 14.7 1.0 C1D B:HEB301 3.0 16.4 1.0 C4C B:HEB301 3.0 17.6 1.0 C1C B:HEB301 3.0 19.8 1.0 C4A B:HEB301 3.1 16.5 1.0 CD2 B:HIS64 3.1 18.0 1.0 C4B B:HEB301 3.1 20.5 1.0 CD2 B:HIS25 3.1 19.5 1.0 C1B B:HEB301 3.1 15.9 1.0 CE1 B:HIS64 3.1 17.6 1.0 CE1 B:HIS25 3.2 18.1 1.0 CHA B:HEB301 3.3 16.3 1.0 CHD B:HEB301 3.4 17.5 1.0 CHC B:HEB301 3.4 21.1 1.0 CHB B:HEB301 3.5 16.5 1.0 C2A B:HEB301 4.2 19.6 1.0 C3D B:HEB301 4.2 11.9 1.0 ND1 B:HIS64 4.2 14.5 1.0 C2D B:HEB301 4.2 14.7 1.0 CG B:HIS64 4.2 15.4 1.0 C3A B:HEB301 4.2 16.3 1.0 C3C B:HEB301 4.3 22.1 1.0 C2C B:HEB301 4.3 18.6 1.0 CG B:HIS25 4.3 19.9 1.0 ND1 B:HIS25 4.3 17.2 1.0 C3B B:HEB301 4.3 20.5 1.0 HHA B:HEB301 4.3 19.6 1.0 C2B B:HEB301 4.3 20.6 1.0 HHD B:HEB301 4.4 21.0 1.0 HHC B:HEB301 4.4 25.3 1.0 HHB B:HEB301 4.5 19.8 1.0 CG1 B:VAL40 4.8 15.8 1.0

H.E.Shin, T.F.Moraes. Heme Acquisition By Slam-Dependent Hemophores in Gram-Negative Bacteria To Be Published.