Iron in PDB 8gmm: Stenotrophomonas Maltophilia Holo Hpha

The structure of Stenotrophomonas Maltophilia Holo Hpha, PDB code: 8gmm was solved by H.E.Shin, T.F.Moraes, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.25 / 1.80
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	46.618, 76.663, 62.264, 90, 94.33, 90
R / Rfree (%)	15.2 / 17.9

The binding sites of Iron atom in the Stenotrophomonas Maltophilia Holo Hpha (pdb code 8gmm). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Stenotrophomonas Maltophilia Holo Hpha, PDB code: 8gmm:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in the Stenotrophomonas Maltophilia Holo Hpha


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Stenotrophomonas Maltophilia Holo Hpha within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe301 b:19.2 occ:1.00 FE A:HEB301 0.0 19.2 1.0 NA A:HEB301 2.0 29.3 1.0 ND A:HEB301 2.0 28.0 1.0 NB A:HEB301 2.1 27.7 1.0 NC A:HEB301 2.1 28.0 1.0 NE2 A:HIS80 2.2 35.3 1.0 NE2 A:HIS29 2.2 27.4 1.0 C4A A:HEB301 3.0 29.4 1.0 C1A A:HEB301 3.0 30.6 1.0 C4D A:HEB301 3.0 32.2 1.0 C1B A:HEB301 3.1 29.2 1.0 C1D A:HEB301 3.1 30.3 1.0 CD2 A:HIS29 3.1 26.0 1.0 C4B A:HEB301 3.1 29.6 1.0 C1C A:HEB301 3.1 30.2 1.0 CD2 A:HIS80 3.1 31.7 1.0 C4C A:HEB301 3.1 29.8 1.0 CE1 A:HIS29 3.2 21.8 1.0 CE1 A:HIS80 3.2 35.2 1.0 HD2 A:HIS29 3.2 31.3 1.0 HD2 A:HIS80 3.2 38.2 1.0 HE1 A:HIS80 3.4 42.3 1.0 HE1 A:HIS29 3.4 26.2 1.0 CHA A:HEB301 3.4 32.0 1.0 CHB A:HEB301 3.4 28.6 1.0 CHC A:HEB301 3.5 28.4 1.0 CHD A:HEB301 3.5 28.2 1.0 HG11 A:VAL47 3.8 30.1 1.0 C2A A:HEB301 4.2 34.6 1.0 C3A A:HEB301 4.2 32.7 1.0 HD2 A:PRO77 4.2 43.2 1.0 ND1 A:HIS29 4.3 24.2 1.0 CG A:HIS29 4.3 23.9 1.0 C3D A:HEB301 4.3 35.6 1.0 CG A:HIS80 4.3 34.3 1.0 ND1 A:HIS80 4.3 35.2 1.0 C2D A:HEB301 4.3 34.0 1.0 C2B A:HEB301 4.3 32.6 1.0 C3B A:HEB301 4.3 34.2 1.0 C2C A:HEB301 4.3 31.0 1.0 HD2 A:PRO28 4.3 33.1 1.0 C3C A:HEB301 4.3 32.1 1.0 HHA A:HEB301 4.4 38.5 1.0 HHB A:HEB301 4.4 34.4 1.0 HHD A:HEB301 4.4 33.9 1.0 HHC A:HEB301 4.4 34.1 1.0 HG2 A:PRO77 4.7 44.7 1.0 HG21 A:VAL47 4.8 28.0 1.0 HG11 A:VAL41 4.8 43.6 1.0 HD3 A:PRO77 4.8 43.2 1.0 CG1 A:VAL47 4.8 25.1 1.0 CD A:PRO77 4.9 35.9 1.0 HG2 A:PRO28 4.9 32.9 1.0

Iron binding site 2 out of 2 in the Stenotrophomonas Maltophilia Holo Hpha


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Stenotrophomonas Maltophilia Holo Hpha within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe301 b:20.2 occ:1.00 FE B:HEB301 0.0 20.2 1.0 NC B:HEB301 2.0 25.6 1.0 NA B:HEB301 2.1 20.2 1.0 NB B:HEB301 2.1 21.0 1.0 ND B:HEB301 2.1 21.1 1.0 NE2 B:HIS29 2.1 16.5 1.0 NE2 B:HIS80 2.2 26.2 1.0 CD2 B:HIS80 2.9 23.7 1.0 HD2 B:HIS80 3.0 28.6 1.0 C1D B:HEB301 3.0 23.8 1.0 C4A B:HEB301 3.0 20.7 1.0 CD2 B:HIS29 3.0 15.7 1.0 C1B B:HEB301 3.0 19.8 1.0 C4C B:HEB301 3.1 26.5 1.0 C1C B:HEB301 3.1 26.1 1.0 C4B B:HEB301 3.1 21.2 1.0 C1A B:HEB301 3.1 22.7 1.0 C4D B:HEB301 3.1 23.3 1.0 HD2 B:HIS29 3.2 18.9 1.0 CE1 B:HIS29 3.2 16.8 1.0 CE1 B:HIS80 3.3 23.7 1.0 CHD B:HEB301 3.4 24.6 1.0 CHB B:HEB301 3.4 19.8 1.0 HE1 B:HIS29 3.4 20.2 1.0 CHC B:HEB301 3.4 21.3 1.0 CHA B:HEB301 3.5 21.5 1.0 HE1 B:HIS80 3.6 28.6 1.0 HG11 B:VAL47 3.9 18.7 1.0 CG B:HIS80 4.2 25.3 1.0 CG B:HIS29 4.2 16.3 1.0 HD2 B:PRO28 4.2 21.3 1.0 ND1 B:HIS29 4.2 15.6 1.0 C3A B:HEB301 4.3 22.3 1.0 C2D B:HEB301 4.3 27.6 1.0 C2C B:HEB301 4.3 28.1 1.0 C3C B:HEB301 4.3 30.2 1.0 C2B B:HEB301 4.3 18.8 1.0 ND1 B:HIS80 4.3 25.9 1.0 C3B B:HEB301 4.3 20.2 1.0 C2A B:HEB301 4.3 26.5 1.0 HHD B:HEB301 4.3 29.6 1.0 C3D B:HEB301 4.3 27.1 1.0 HHB B:HEB301 4.3 23.8 1.0 HHC B:HEB301 4.4 25.6 1.0 HD2 B:PRO77 4.4 45.3 1.0 HHA B:HEB301 4.5 25.9 1.0 HG2 B:PRO28 4.6 23.9 1.0 HG2 B:PRO77 4.7 45.7 1.0 HG11 B:VAL41 4.8 33.9 1.0 CG1 B:VAL47 4.9 15.6 1.0 HG21 B:VAL47 4.9 19.4 1.0 HD3 B:PRO77 5.0 45.3 1.0

H.E.Shin, T.F.Moraes. Heme Acquisition By Slam-Dependent Hemophores in Gram-Negative Bacteria To Be Published.