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Iron in PDB 8go3: Cryo-Em Structure of Escherichia Coli Cytochrome BO3 in Ddm Detergent

Enzymatic activity of Cryo-Em Structure of Escherichia Coli Cytochrome BO3 in Ddm Detergent

All present enzymatic activity of Cryo-Em Structure of Escherichia Coli Cytochrome BO3 in Ddm Detergent:
7.1.1.3;

Other elements in 8go3:

The structure of Cryo-Em Structure of Escherichia Coli Cytochrome BO3 in Ddm Detergent also contains other interesting chemical elements:

Copper (Cu) 1 atom

Iron Binding Sites:

The binding sites of Iron atom in the Cryo-Em Structure of Escherichia Coli Cytochrome BO3 in Ddm Detergent (pdb code 8go3). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Cryo-Em Structure of Escherichia Coli Cytochrome BO3 in Ddm Detergent, PDB code: 8go3:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 8go3

Go back to Iron Binding Sites List in 8go3
Iron binding site 1 out of 2 in the Cryo-Em Structure of Escherichia Coli Cytochrome BO3 in Ddm Detergent


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Cryo-Em Structure of Escherichia Coli Cytochrome BO3 in Ddm Detergent within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe701

b:60.5
occ:1.00
FE A:HEM701 0.0 60.5 1.0
ND A:HEM701 1.9 60.5 1.0
NA A:HEM701 2.0 60.5 1.0
NC A:HEM701 2.1 60.5 1.0
NB A:HEM701 2.1 60.5 1.0
NE2 A:HIS421 2.2 60.8 1.0
NE2 A:HIS106 2.3 59.2 1.0
C4D A:HEM701 2.8 60.5 1.0
C1D A:HEM701 2.9 60.5 1.0
C1A A:HEM701 2.9 60.5 1.0
C4C A:HEM701 3.0 60.5 1.0
C4A A:HEM701 3.0 60.5 1.0
C4B A:HEM701 3.1 60.5 1.0
C1B A:HEM701 3.1 60.5 1.0
C1C A:HEM701 3.1 60.5 1.0
CD2 A:HIS421 3.1 60.8 1.0
CD2 A:HIS106 3.1 59.2 1.0
CE1 A:HIS421 3.2 60.8 1.0
CHA A:HEM701 3.3 60.5 1.0
CHD A:HEM701 3.4 60.5 1.0
CE1 A:HIS106 3.4 59.2 1.0
CHB A:HEM701 3.5 60.5 1.0
CHC A:HEM701 3.5 60.5 1.0
C3D A:HEM701 4.1 60.5 1.0
C2D A:HEM701 4.1 60.5 1.0
C2A A:HEM701 4.1 60.5 1.0
C3A A:HEM701 4.2 60.5 1.0
C3C A:HEM701 4.2 60.5 1.0
C2C A:HEM701 4.3 60.5 1.0
C2B A:HEM701 4.3 60.5 1.0
CG A:HIS421 4.3 60.8 1.0
C3B A:HEM701 4.3 60.5 1.0
ND1 A:HIS421 4.3 60.8 1.0
CG A:HIS106 4.4 59.2 1.0
ND1 A:HIS106 4.4 59.2 1.0

Iron binding site 2 out of 2 in 8go3

Go back to Iron Binding Sites List in 8go3
Iron binding site 2 out of 2 in the Cryo-Em Structure of Escherichia Coli Cytochrome BO3 in Ddm Detergent


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Cryo-Em Structure of Escherichia Coli Cytochrome BO3 in Ddm Detergent within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe702

b:64.3
occ:1.00
FE A:HEO702 0.0 64.3 1.0
NA A:HEO702 1.9 64.3 1.0
ND A:HEO702 2.0 64.3 1.0
NB A:HEO702 2.0 64.3 1.0
NC A:HEO702 2.0 64.3 1.0
NE2 A:HIS419 2.0 61.7 1.0
CD2 A:HIS419 2.9 61.7 1.0
C1A A:HEO702 3.0 64.3 1.0
C4D A:HEO702 3.0 64.3 1.0
C4A A:HEO702 3.0 64.3 1.0
C1B A:HEO702 3.0 64.3 1.0
C4B A:HEO702 3.0 64.3 1.0
C1C A:HEO702 3.0 64.3 1.0
C1D A:HEO702 3.0 64.3 1.0
C4C A:HEO702 3.0 64.3 1.0
CE1 A:HIS419 3.1 61.7 1.0
CHA A:HEO702 3.3 64.3 1.0
CHC A:HEO702 3.4 64.3 1.0
CHB A:HEO702 3.4 64.3 1.0
CHD A:HEO702 3.4 64.3 1.0
CG A:HIS419 4.1 61.7 1.0
ND1 A:HIS419 4.1 61.7 1.0
C2A A:HEO702 4.2 64.3 1.0
C3B A:HEO702 4.2 64.3 1.0
C3A A:HEO702 4.2 64.3 1.0
C3D A:HEO702 4.2 64.3 1.0
C2B A:HEO702 4.2 64.3 1.0
C2D A:HEO702 4.2 64.3 1.0
C2C A:HEO702 4.3 64.3 1.0
C3C A:HEO702 4.3 64.3 1.0
CU A:CU703 4.7 82.7 1.0
CB A:PHE420 4.8 60.5 1.0
CG2 A:VAL423 5.0 61.3 1.0

Reference:

H.Y.Cao, K.Li, C.Y.Li. Cryo-Em Structure of Escherichia Coli Cytochrome BO3 in Ddm Detergent To Be Published.
Page generated: Thu Dec 28 06:00:21 2023

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