Iron in PDB 8gth: Crystal Strucuture of Cyt C551 From Anoxygenic Phototrophic Bacterium Roseiflexus Castenholzii

The structure of Crystal Strucuture of Cyt C551 From Anoxygenic Phototrophic Bacterium Roseiflexus Castenholzii, PDB code: 8gth was solved by Z.Z.Min, H.L.Meng, X.L.Xu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	31.43 / 3.10
Space group	P 41 21 2
Cell size a, b, c (Å), α, β, γ (°)	71.63, 71.63, 349.76, 90, 90, 90
R / Rfree (%)	24.2 / 27.2

The binding sites of Iron atom in the Crystal Strucuture of Cyt C551 From Anoxygenic Phototrophic Bacterium Roseiflexus Castenholzii (pdb code 8gth). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 6 binding sites of Iron where determined in the Crystal Strucuture of Cyt C551 From Anoxygenic Phototrophic Bacterium Roseiflexus Castenholzii, PDB code: 8gth:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6;

Iron binding site 1 out of 6 in the Crystal Strucuture of Cyt C551 From Anoxygenic Phototrophic Bacterium Roseiflexus Castenholzii


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Strucuture of Cyt C551 From Anoxygenic Phototrophic Bacterium Roseiflexus Castenholzii within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe201 b:51.9 occ:1.00 FE A:HEC201 0.0 51.9 1.0 NC A:HEC201 2.1 40.6 1.0 NA A:HEC201 2.1 44.1 1.0 NB A:HEC201 2.1 38.2 1.0 ND A:HEC201 2.1 35.9 1.0 NE2 A:HIS65 2.1 43.6 1.0 SD A:MET124 2.2 44.7 1.0 CD2 A:HIS65 2.7 42.9 1.0 C4C A:HEC201 3.1 39.5 1.0 C4A A:HEC201 3.1 42.5 1.0 C1B A:HEC201 3.1 41.8 1.0 C1A A:HEC201 3.1 43.1 1.0 C1D A:HEC201 3.1 39.5 1.0 C1C A:HEC201 3.1 41.1 1.0 C4B A:HEC201 3.1 45.4 1.0 C4D A:HEC201 3.1 37.8 1.0 CE1 A:HIS65 3.3 46.8 1.0 CG A:MET124 3.4 50.3 1.0 CHD A:HEC201 3.4 39.3 1.0 CHA A:HEC201 3.4 41.9 1.0 CHB A:HEC201 3.4 43.6 1.0 CHC A:HEC201 3.5 46.3 1.0 CE A:MET124 3.6 41.7 1.0 CG A:HIS65 4.0 44.0 1.0 ND1 A:HIS65 4.2 44.1 1.0 C2C A:HEC201 4.3 40.1 1.0 C2B A:HEC201 4.3 45.5 1.0 C3C A:HEC201 4.3 41.0 1.0 C3A A:HEC201 4.3 37.4 1.0 C2A A:HEC201 4.3 41.6 1.0 C3B A:HEC201 4.3 49.9 1.0 C2D A:HEC201 4.3 40.5 1.0 C3D A:HEC201 4.3 37.1 1.0 CB A:MET124 4.7 48.6 1.0

Iron binding site 2 out of 6 in the Crystal Strucuture of Cyt C551 From Anoxygenic Phototrophic Bacterium Roseiflexus Castenholzii


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Strucuture of Cyt C551 From Anoxygenic Phototrophic Bacterium Roseiflexus Castenholzii within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe201 b:42.9 occ:1.00 FE B:HEC201 0.0 42.9 1.0 NC B:HEC201 2.0 41.5 1.0 NA B:HEC201 2.1 45.4 1.0 NB B:HEC201 2.1 43.4 1.0 ND B:HEC201 2.1 41.9 1.0 NE2 B:HIS65 2.1 44.4 1.0 SD B:MET124 2.2 44.9 1.0 CD2 B:HIS65 2.8 44.9 1.0 C4C B:HEC201 3.0 42.9 1.0 C1D B:HEC201 3.1 43.8 1.0 C1B B:HEC201 3.1 47.6 1.0 C4A B:HEC201 3.1 46.4 1.0 C1C B:HEC201 3.1 45.1 1.0 C4D B:HEC201 3.1 42.3 1.0 C1A B:HEC201 3.1 46.1 1.0 C4B B:HEC201 3.1 43.1 1.0 CE1 B:HIS65 3.3 48.0 1.0 CG B:MET124 3.3 44.9 1.0 CHD B:HEC201 3.4 43.7 1.0 CHB B:HEC201 3.4 48.7 1.0 CHA B:HEC201 3.4 47.7 1.0 CHC B:HEC201 3.5 45.4 1.0 CE B:MET124 3.8 52.3 1.0 CG B:HIS65 4.1 47.1 1.0 C3C B:HEC201 4.2 39.1 1.0 C2C B:HEC201 4.3 37.8 1.0 ND1 B:HIS65 4.3 50.0 1.0 C2B B:HEC201 4.3 48.1 1.0 C3A B:HEC201 4.3 48.4 1.0 C3B B:HEC201 4.3 47.1 1.0 C2D B:HEC201 4.3 42.3 1.0 C3D B:HEC201 4.3 41.5 1.0 C2A B:HEC201 4.3 48.2 1.0 CB B:MET124 4.4 41.3 1.0

Iron binding site 3 out of 6 in the Crystal Strucuture of Cyt C551 From Anoxygenic Phototrophic Bacterium Roseiflexus Castenholzii


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Crystal Strucuture of Cyt C551 From Anoxygenic Phototrophic Bacterium Roseiflexus Castenholzii within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe201 b:46.7 occ:1.00 FE C:HEC201 0.0 46.7 1.0 NA C:HEC201 2.1 46.8 1.0 NC C:HEC201 2.1 52.1 1.0 NB C:HEC201 2.1 52.6 1.0 ND C:HEC201 2.1 45.6 1.0 NE2 C:HIS65 2.1 46.6 1.0 SD C:MET124 2.2 53.9 1.0 CD2 C:HIS65 2.8 47.5 1.0 C4D C:HEC201 3.1 47.1 1.0 C1A C:HEC201 3.1 48.6 1.0 C1B C:HEC201 3.1 54.5 1.0 C4A C:HEC201 3.1 48.3 1.0 C4C C:HEC201 3.1 52.7 1.0 C1C C:HEC201 3.1 53.0 1.0 C4B C:HEC201 3.1 54.1 1.0 C1D C:HEC201 3.1 49.2 1.0 CE C:MET124 3.2 55.5 1.0 CE1 C:HIS65 3.3 48.4 1.0 CHA C:HEC201 3.4 52.0 1.0 CHD C:HEC201 3.4 49.0 1.0 CHB C:HEC201 3.5 54.2 1.0 CHC C:HEC201 3.5 56.6 1.0 CG C:MET124 3.6 53.9 1.0 CG C:HIS65 4.1 48.0 1.0 CB C:MET124 4.2 50.7 1.0 ND1 C:HIS65 4.2 47.5 1.0 C2B C:HEC201 4.3 58.4 1.0 C2A C:HEC201 4.3 50.3 1.0 C3A C:HEC201 4.3 48.5 1.0 C3B C:HEC201 4.3 55.5 1.0 C2C C:HEC201 4.3 52.8 1.0 C3C C:HEC201 4.3 55.7 1.0 C3D C:HEC201 4.3 45.3 1.0 C2D C:HEC201 4.3 50.8 1.0

Iron binding site 4 out of 6 in the Crystal Strucuture of Cyt C551 From Anoxygenic Phototrophic Bacterium Roseiflexus Castenholzii


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Crystal Strucuture of Cyt C551 From Anoxygenic Phototrophic Bacterium Roseiflexus Castenholzii within 5.0Å range: probe atom residue distance (Å) B Occ E:Fe201 b:83.0 occ:1.00 FE E:HEC201 0.0 83.0 1.0 NC E:HEC201 2.1 78.5 1.0 NA E:HEC201 2.1 80.7 1.0 NB E:HEC201 2.1 78.0 1.0 ND E:HEC201 2.1 77.3 1.0 NE2 E:HIS65 2.2 73.7 1.0 SD E:MET124 2.2 76.2 1.0 CD2 E:HIS65 3.0 72.6 1.0 C4C E:HEC201 3.1 80.6 1.0 C4D E:HEC201 3.1 80.6 1.0 C1A E:HEC201 3.1 84.2 1.0 C1D E:HEC201 3.1 79.4 1.0 C4A E:HEC201 3.1 79.0 1.0 C1B E:HEC201 3.1 78.3 1.0 C1C E:HEC201 3.1 79.8 1.0 C4B E:HEC201 3.1 78.8 1.0 CG E:MET124 3.3 88.9 1.0 CE1 E:HIS65 3.3 75.8 1.0 CHD E:HEC201 3.4 77.7 1.0 CHA E:HEC201 3.4 81.5 1.0 CHB E:HEC201 3.4 79.2 1.0 CHC E:HEC201 3.5 81.2 1.0 CE E:MET124 3.8 80.7 1.0 CG E:HIS65 4.2 70.9 1.0 CB E:MET124 4.2 89.5 1.0 C2C E:HEC201 4.3 78.5 1.0 C3C E:HEC201 4.3 83.0 1.0 C3A E:HEC201 4.3 78.8 1.0 C2A E:HEC201 4.3 83.5 1.0 C2B E:HEC201 4.3 77.8 1.0 C3D E:HEC201 4.3 83.9 1.0 C2D E:HEC201 4.3 82.6 1.0 C3B E:HEC201 4.3 77.0 1.0 ND1 E:HIS65 4.3 73.8 1.0

Iron binding site 5 out of 6 in the Crystal Strucuture of Cyt C551 From Anoxygenic Phototrophic Bacterium Roseiflexus Castenholzii


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Crystal Strucuture of Cyt C551 From Anoxygenic Phototrophic Bacterium Roseiflexus Castenholzii within 5.0Å range: probe atom residue distance (Å) B Occ F:Fe201 b:77.6 occ:1.00 FE F:HEC201 0.0 77.6 1.0 NC F:HEC201 2.1 77.0 1.0 NA F:HEC201 2.1 80.7 1.0 NB F:HEC201 2.1 79.0 1.0 ND F:HEC201 2.1 74.2 1.0 NE2 F:HIS65 2.2 75.6 1.0 SD F:MET124 2.2 78.4 1.0 CD2 F:HIS65 3.0 75.4 1.0 C4C F:HEC201 3.1 73.1 1.0 C4A F:HEC201 3.1 81.7 1.0 C1D F:HEC201 3.1 75.4 1.0 C1A F:HEC201 3.1 80.7 1.0 C4D F:HEC201 3.1 76.2 1.0 C1B F:HEC201 3.1 76.8 1.0 C1C F:HEC201 3.1 75.2 1.0 C4B F:HEC201 3.1 77.5 1.0 CE1 F:HIS65 3.2 76.9 1.0 CE F:MET124 3.3 76.2 1.0 CHD F:HEC201 3.4 72.0 1.0 CHA F:HEC201 3.4 79.2 1.0 CHB F:HEC201 3.4 79.5 1.0 CHC F:HEC201 3.5 74.2 1.0 CG F:MET124 3.6 84.3 1.0 CG F:HIS65 4.2 74.7 1.0 CB F:MET124 4.2 82.1 1.0 C3A F:HEC201 4.3 81.8 1.0 C2A F:HEC201 4.3 82.8 1.0 C3C F:HEC201 4.3 77.7 1.0 ND1 F:HIS65 4.3 75.4 1.0 C2C F:HEC201 4.3 76.4 1.0 C2B F:HEC201 4.3 75.5 1.0 C2D F:HEC201 4.3 74.5 1.0 C3D F:HEC201 4.3 75.0 1.0 C3B F:HEC201 4.3 77.5 1.0

Iron binding site 6 out of 6 in the Crystal Strucuture of Cyt C551 From Anoxygenic Phototrophic Bacterium Roseiflexus Castenholzii


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Crystal Strucuture of Cyt C551 From Anoxygenic Phototrophic Bacterium Roseiflexus Castenholzii within 5.0Å range: probe atom residue distance (Å) B Occ D:Fe201 b:41.0 occ:1.00 FE D:HEC201 0.0 41.0 1.0 NC D:HEC201 2.0 52.0 1.0 ND D:HEC201 2.1 49.5 1.0 NB D:HEC201 2.1 49.8 1.0 NA D:HEC201 2.1 51.0 1.0 SD D:MET124 2.2 58.1 1.0 NE2 D:HIS65 2.2 54.9 1.0 CD2 D:HIS65 2.9 50.5 1.0 C4C D:HEC201 3.0 56.6 1.0 C1D D:HEC201 3.1 56.6 1.0 C4D D:HEC201 3.1 53.6 1.0 C1C D:HEC201 3.1 56.2 1.0 C1A D:HEC201 3.1 52.1 1.0 C1B D:HEC201 3.1 55.5 1.0 C4A D:HEC201 3.1 53.1 1.0 C4B D:HEC201 3.1 52.1 1.0 CE D:MET124 3.2 48.0 1.0 CHD D:HEC201 3.4 56.1 1.0 CE1 D:HIS65 3.4 56.2 1.0 CHA D:HEC201 3.4 56.7 1.0 CHB D:HEC201 3.5 56.6 1.0 CHC D:HEC201 3.5 59.5 1.0 CG D:MET124 3.5 56.4 1.0 CG D:HIS65 4.1 52.7 1.0 C2C D:HEC201 4.3 55.4 1.0 C3C D:HEC201 4.3 59.5 1.0 C2B D:HEC201 4.3 56.3 1.0 C2A D:HEC201 4.3 52.1 1.0 C3A D:HEC201 4.3 51.3 1.0 C2D D:HEC201 4.3 53.3 1.0 C3D D:HEC201 4.3 52.0 1.0 C3B D:HEC201 4.3 51.8 1.0 CB D:MET124 4.3 60.0 1.0 ND1 D:HIS65 4.4 54.4 1.0

Z.Z.Min, H.L.Meng, X.L.Xu. Crystal Strucuture of Cyt C551 From Anoxygenic Phototrophic Bacterium Roseiflexus Castenholzii To Be Published.