Iron in PDB 8h28: Crystal Structure of the K87V Mutant of Cytochrome C' From Shewanella Benthica DB6705

The structure of Crystal Structure of the K87V Mutant of Cytochrome C' From Shewanella Benthica DB6705, PDB code: 8h28 was solved by S.Fujii, R.Sakaguchi, H.Oki, K.Kawahara, T.Ohkubo, S.Fujiyoshi, Y.Sambongi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	37.43 / 2.06
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	44.773, 68.259, 45.507, 90, 112.04, 90
R / Rfree (%)	20.2 / 25.5

The binding sites of Iron atom in the Crystal Structure of the K87V Mutant of Cytochrome C' From Shewanella Benthica DB6705 (pdb code 8h28). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Crystal Structure of the K87V Mutant of Cytochrome C' From Shewanella Benthica DB6705, PDB code: 8h28:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in the Crystal Structure of the K87V Mutant of Cytochrome C' From Shewanella Benthica DB6705


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of the K87V Mutant of Cytochrome C' From Shewanella Benthica DB6705 within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe201 b:31.5 occ:1.00 FE A:HEC201 0.0 31.5 1.0 NE2 A:HIS123 2.0 32.3 1.0 NC A:HEC201 2.0 29.1 1.0 ND A:HEC201 2.1 34.2 1.0 NA A:HEC201 2.1 33.5 1.0 NB A:HEC201 2.1 35.6 1.0 CD2 A:HIS123 2.9 30.4 1.0 CE1 A:HIS123 3.0 40.0 1.0 C1C A:HEC201 3.0 31.7 1.0 C4C A:HEC201 3.0 28.5 1.0 C1D A:HEC201 3.1 30.2 1.0 C4B A:HEC201 3.1 33.1 1.0 C1A A:HEC201 3.1 31.7 1.0 C4D A:HEC201 3.1 32.1 1.0 C4A A:HEC201 3.2 32.2 1.0 C1B A:HEC201 3.2 30.0 1.0 CD1 A:PHE17 3.3 34.1 1.0 CHD A:HEC201 3.4 28.5 1.0 CHC A:HEC201 3.4 29.7 1.0 CHA A:HEC201 3.5 30.0 1.0 CE1 A:PHE17 3.5 30.2 1.0 CHB A:HEC201 3.6 27.9 1.0 CG A:PHE17 3.8 30.4 1.0 CZ A:PHE17 4.0 29.2 1.0 CG A:HIS123 4.1 37.9 1.0 ND1 A:HIS123 4.1 35.0 1.0 CD2 A:PHE17 4.2 30.3 1.0 C2C A:HEC201 4.2 28.1 1.0 C3C A:HEC201 4.3 28.9 1.0 C2D A:HEC201 4.3 34.5 1.0 C3D A:HEC201 4.3 30.6 1.0 C2A A:HEC201 4.3 29.2 1.0 C3B A:HEC201 4.3 31.8 1.0 CE2 A:PHE17 4.4 32.1 1.0 C3A A:HEC201 4.4 30.7 1.0 C2B A:HEC201 4.4 34.4 1.0 CB A:PHE17 4.4 28.2 1.0

Iron binding site 2 out of 2 in the Crystal Structure of the K87V Mutant of Cytochrome C' From Shewanella Benthica DB6705


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure of the K87V Mutant of Cytochrome C' From Shewanella Benthica DB6705 within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe201 b:30.4 occ:1.00 FE B:HEC201 0.0 30.4 1.0 NB B:HEC201 2.0 30.5 1.0 NC B:HEC201 2.1 32.6 1.0 NE2 B:HIS123 2.1 28.7 1.0 NA B:HEC201 2.1 28.1 1.0 ND B:HEC201 2.1 24.7 1.0 C1B B:HEC201 3.0 27.2 1.0 CD2 B:HIS123 3.0 25.5 1.0 C4B B:HEC201 3.0 31.4 1.0 C4C B:HEC201 3.1 28.9 1.0 C1D B:HEC201 3.1 27.7 1.0 C4A B:HEC201 3.1 27.5 1.0 C1C B:HEC201 3.1 28.2 1.0 CE1 B:HIS123 3.2 36.5 1.0 C4D B:HEC201 3.2 28.3 1.0 C1A B:HEC201 3.2 24.4 1.0 CD1 B:PHE17 3.3 22.9 1.0 CE1 B:PHE17 3.4 27.2 1.0 CHB B:HEC201 3.4 24.9 1.0 CHD B:HEC201 3.4 27.6 1.0 CHC B:HEC201 3.4 27.0 1.0 CHA B:HEC201 3.6 27.9 1.0 CG B:PHE17 3.8 26.6 1.0 CZ B:PHE17 3.9 28.1 1.0 CG B:HIS123 4.2 31.4 1.0 C2B B:HEC201 4.2 31.8 1.0 ND1 B:HIS123 4.2 28.6 1.0 C3B B:HEC201 4.2 28.4 1.0 C3C B:HEC201 4.3 27.6 1.0 C2C B:HEC201 4.3 30.5 1.0 C2D B:HEC201 4.3 28.4 1.0 C3A B:HEC201 4.3 31.2 1.0 CD2 B:PHE17 4.4 24.7 1.0 C2A B:HEC201 4.4 28.1 1.0 C3D B:HEC201 4.4 31.6 1.0 CE2 B:PHE17 4.4 28.6 1.0 CB B:PHE17 4.5 28.8 1.0

S.Fujii, R.Sakaguchi, H.Oki, K.Kawahara, T.Ohkubo, S.Fujiyoshi, Y.Sambongi. Contribution of Salt Bridge and Solvent Interaction to Thermal Stability of Cytochromes C' From Deep-Sea Psychrophilic and Piezophilic Shewanella Species To Be Published.