Iron in PDB 8hju: Cryo-Em Structure of Native Rc-Lh Complex From Roseiflexus Castenholzii at 10,000 Lux

The structure of Cryo-Em Structure of Native Rc-Lh Complex From Roseiflexus Castenholzii at 10,000 Lux also contains other interesting chemical elements:

Magnesium

(Mg)

48 atoms

The binding sites of Iron atom in the Cryo-Em Structure of Native Rc-Lh Complex From Roseiflexus Castenholzii at 10,000 Lux (pdb code 8hju). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 5 binding sites of Iron where determined in the Cryo-Em Structure of Native Rc-Lh Complex From Roseiflexus Castenholzii at 10,000 Lux, PDB code: 8hju:
Jump to Iron binding site number: 1; 2; 3; 4; 5;

Iron binding site 1 out of 5 in the Cryo-Em Structure of Native Rc-Lh Complex From Roseiflexus Castenholzii at 10,000 Lux


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Cryo-Em Structure of Native Rc-Lh Complex From Roseiflexus Castenholzii at 10,000 Lux within 5.0Å range: probe atom residue distance (Å) B Occ M:Fe702 b:27.0 occ:1.00 OE2 M:GLU557 1.8 23.3 1.0 NE2 L:HIS229 2.1 16.3 1.0 NE2 M:HIS542 2.2 16.8 1.0 NE2 M:HIS589 2.2 16.0 1.0 NE2 L:HIS264 2.4 18.1 1.0 CE1 L:HIS229 2.8 16.3 1.0 CD M:GLU557 2.8 23.3 1.0 CE1 M:HIS542 2.9 16.8 1.0 CD2 M:HIS589 3.2 16.0 1.0 CE1 M:HIS589 3.2 16.0 1.0 CD2 L:HIS229 3.2 16.3 1.0 CE1 L:HIS264 3.3 18.1 1.0 CD2 M:HIS542 3.3 16.8 1.0 CD2 L:HIS264 3.4 18.1 1.0 CG M:GLU557 3.6 23.3 1.0 OE1 M:GLU557 3.7 23.3 1.0 ND1 L:HIS229 4.0 16.3 1.0 ND1 M:HIS542 4.1 16.8 1.0 CG2 L:VAL233 4.2 16.5 1.0 CG L:HIS229 4.3 16.3 1.0 ND1 M:HIS589 4.3 16.0 1.0 CG M:HIS542 4.3 16.8 1.0 CG M:HIS589 4.4 16.0 1.0 ND1 L:HIS264 4.4 18.1 1.0 CG L:HIS264 4.5 18.1 1.0 CB M:GLU557 4.7 23.3 1.0 CG1 M:ILE546 4.8 17.0 1.0

Iron binding site 2 out of 5 in the Cryo-Em Structure of Native Rc-Lh Complex From Roseiflexus Castenholzii at 10,000 Lux


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Cryo-Em Structure of Native Rc-Lh Complex From Roseiflexus Castenholzii at 10,000 Lux within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe402 b:47.8 occ:1.00 FE C:HEM402 0.0 47.8 1.0 ND C:HEM402 2.0 47.8 1.0 NA C:HEM402 2.0 47.8 1.0 NC C:HEM402 2.0 47.8 1.0 NB C:HEM402 2.0 47.8 1.0 SD C:MET106 2.1 44.6 1.0 NE2 C:HIS122 2.1 50.3 1.0 C1A C:HEM402 2.9 47.8 1.0 C4D C:HEM402 2.9 47.8 1.0 C4C C:HEM402 3.0 47.8 1.0 C1D C:HEM402 3.0 47.8 1.0 C1B C:HEM402 3.0 47.8 1.0 C4B C:HEM402 3.0 47.8 1.0 CD2 C:HIS122 3.0 50.3 1.0 C1C C:HEM402 3.1 47.8 1.0 C4A C:HEM402 3.1 47.8 1.0 CE1 C:HIS122 3.1 50.3 1.0 CG C:MET106 3.2 44.6 1.0 CHA C:HEM402 3.3 47.8 1.0 CHD C:HEM402 3.4 47.8 1.0 CHC C:HEM402 3.5 47.8 1.0 CHB C:HEM402 3.5 47.8 1.0 CE C:MET106 3.7 44.6 1.0 C2A C:HEM402 4.2 47.8 1.0 CG C:HIS122 4.2 50.3 1.0 ND1 C:HIS122 4.2 50.3 1.0 C3C C:HEM402 4.2 47.8 1.0 C3D C:HEM402 4.2 47.8 1.0 C2D C:HEM402 4.2 47.8 1.0 C3A C:HEM402 4.2 47.8 1.0 C2C C:HEM402 4.2 47.8 1.0 C2B C:HEM402 4.2 47.8 1.0 C3B C:HEM402 4.3 47.8 1.0 CB C:MET106 4.4 44.6 1.0

Iron binding site 3 out of 5 in the Cryo-Em Structure of Native Rc-Lh Complex From Roseiflexus Castenholzii at 10,000 Lux


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Cryo-Em Structure of Native Rc-Lh Complex From Roseiflexus Castenholzii at 10,000 Lux within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe403 b:33.6 occ:1.00 FE C:HEM403 0.0 33.6 1.0 ND C:HEM403 2.0 33.6 1.0 NA C:HEM403 2.0 33.6 1.0 NC C:HEM403 2.0 33.6 1.0 NB C:HEM403 2.0 33.6 1.0 SD C:MET145 2.1 35.1 1.0 NE2 C:HIS175 2.2 32.0 1.0 CE1 C:HIS175 2.9 32.0 1.0 C4D C:HEM403 2.9 33.6 1.0 C1A C:HEM403 2.9 33.6 1.0 C4C C:HEM403 3.0 33.6 1.0 C1D C:HEM403 3.0 33.6 1.0 C1B C:HEM403 3.0 33.6 1.0 C4B C:HEM403 3.0 33.6 1.0 C1C C:HEM403 3.1 33.6 1.0 C4A C:HEM403 3.1 33.6 1.0 CD2 C:HIS175 3.3 32.0 1.0 CE C:MET145 3.3 35.1 1.0 CHA C:HEM403 3.3 33.6 1.0 CG C:MET145 3.3 35.1 1.0 CHD C:HEM403 3.4 33.6 1.0 CHB C:HEM403 3.5 33.6 1.0 CHC C:HEM403 3.5 33.6 1.0 CB C:MET145 4.0 35.1 1.0 ND1 C:HIS175 4.1 32.0 1.0 C2A C:HEM403 4.2 33.6 1.0 C3C C:HEM403 4.2 33.6 1.0 C3D C:HEM403 4.2 33.6 1.0 C2D C:HEM403 4.2 33.6 1.0 C2C C:HEM403 4.2 33.6 1.0 C3A C:HEM403 4.2 33.6 1.0 C2B C:HEM403 4.2 33.6 1.0 C3B C:HEM403 4.3 33.6 1.0 CG C:HIS175 4.3 32.0 1.0 CE C:MET148 4.9 32.6 1.0

Iron binding site 4 out of 5 in the Cryo-Em Structure of Native Rc-Lh Complex From Roseiflexus Castenholzii at 10,000 Lux


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Cryo-Em Structure of Native Rc-Lh Complex From Roseiflexus Castenholzii at 10,000 Lux within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe404 b:16.2 occ:1.00 FE C:HEM404 0.0 16.2 1.0 SD C:MET229 1.9 11.6 1.0 ND C:HEM404 2.0 16.2 1.0 NA C:HEM404 2.0 16.2 1.0 NC C:HEM404 2.0 16.2 1.0 NB C:HEM404 2.0 16.2 1.0 NE2 C:HIS244 2.2 11.2 1.0 C1A C:HEM404 2.9 16.2 1.0 C4D C:HEM404 2.9 16.2 1.0 C4C C:HEM404 2.9 16.2 1.0 CD2 C:HIS244 3.0 11.2 1.0 C1D C:HEM404 3.0 16.2 1.0 C4B C:HEM404 3.0 16.2 1.0 C1B C:HEM404 3.0 16.2 1.0 C4A C:HEM404 3.1 16.2 1.0 C1C C:HEM404 3.1 16.2 1.0 CG C:MET229 3.2 11.6 1.0 CE C:MET229 3.2 11.6 1.0 CE1 C:HIS244 3.3 11.2 1.0 CHA C:HEM404 3.3 16.2 1.0 CHD C:HEM404 3.4 16.2 1.0 CHB C:HEM404 3.5 16.2 1.0 CHC C:HEM404 3.5 16.2 1.0 CB C:MET229 4.1 11.6 1.0 C2A C:HEM404 4.1 16.2 1.0 C3C C:HEM404 4.2 16.2 1.0 CG C:HIS244 4.2 11.2 1.0 C3D C:HEM404 4.2 16.2 1.0 C3A C:HEM404 4.2 16.2 1.0 C2D C:HEM404 4.2 16.2 1.0 C2B C:HEM404 4.2 16.2 1.0 C2C C:HEM404 4.2 16.2 1.0 C3B C:HEM404 4.2 16.2 1.0 ND1 C:HIS244 4.3 11.2 1.0 CA C:MET229 4.9 11.6 1.0

Iron binding site 5 out of 5 in the Cryo-Em Structure of Native Rc-Lh Complex From Roseiflexus Castenholzii at 10,000 Lux


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Cryo-Em Structure of Native Rc-Lh Complex From Roseiflexus Castenholzii at 10,000 Lux within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe405 b:20.7 occ:1.00 FE C:HEM405 0.0 20.7 1.0 ND C:HEM405 2.0 20.7 1.0 NA C:HEM405 2.0 20.7 1.0 NC C:HEM405 2.0 20.7 1.0 NB C:HEM405 2.0 20.7 1.0 SD C:MET263 2.1 20.1 1.0 NE2 C:HIS297 2.1 20.7 1.0 C4D C:HEM405 2.9 20.7 1.0 C1A C:HEM405 2.9 20.7 1.0 CE1 C:HIS297 3.0 20.7 1.0 C4C C:HEM405 3.0 20.7 1.0 C1D C:HEM405 3.0 20.7 1.0 C1B C:HEM405 3.0 20.7 1.0 C4B C:HEM405 3.0 20.7 1.0 C1C C:HEM405 3.1 20.7 1.0 C4A C:HEM405 3.1 20.7 1.0 CG C:MET263 3.1 20.1 1.0 CD2 C:HIS297 3.2 20.7 1.0 CHA C:HEM405 3.3 20.7 1.0 CHD C:HEM405 3.4 20.7 1.0 CHC C:HEM405 3.5 20.7 1.0 CHB C:HEM405 3.5 20.7 1.0 CE C:MET263 3.7 20.1 1.0 CB C:MET263 3.8 20.1 1.0 ND1 C:HIS297 4.1 20.7 1.0 C2A C:HEM405 4.2 20.7 1.0 C3D C:HEM405 4.2 20.7 1.0 C3C C:HEM405 4.2 20.7 1.0 C2D C:HEM405 4.2 20.7 1.0 C3A C:HEM405 4.2 20.7 1.0 C2C C:HEM405 4.2 20.7 1.0 C2B C:HEM405 4.2 20.7 1.0 C3B C:HEM405 4.3 20.7 1.0 CG C:HIS297 4.3 20.7 1.0

X.Xu, J.Xin. Cryo-Em Structure of Carotenoid-Depleted Rc-Lh Complex From Roseiflexus Castenholzii To Be Published.