Iron in PDB 8hjv: Cryo-Em Structure of Carotenoid-Depleted Rc-Lh Complex From Roseiflexus Castenholzii at 10,000 Lux

The structure of Cryo-Em Structure of Carotenoid-Depleted Rc-Lh Complex From Roseiflexus Castenholzii at 10,000 Lux also contains other interesting chemical elements:

Magnesium

(Mg)

48 atoms

The binding sites of Iron atom in the Cryo-Em Structure of Carotenoid-Depleted Rc-Lh Complex From Roseiflexus Castenholzii at 10,000 Lux (pdb code 8hjv). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 5 binding sites of Iron where determined in the Cryo-Em Structure of Carotenoid-Depleted Rc-Lh Complex From Roseiflexus Castenholzii at 10,000 Lux, PDB code: 8hjv:
Jump to Iron binding site number: 1; 2; 3; 4; 5;

Iron binding site 1 out of 5 in the Cryo-Em Structure of Carotenoid-Depleted Rc-Lh Complex From Roseiflexus Castenholzii at 10,000 Lux


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Cryo-Em Structure of Carotenoid-Depleted Rc-Lh Complex From Roseiflexus Castenholzii at 10,000 Lux within 5.0Å range: probe atom residue distance (Å) B Occ M:Fe1004 b:53.6 occ:1.00 OE2 M:GLU557 2.0 40.5 1.0 OE1 M:GLU557 2.0 40.5 1.0 NE2 M:HIS589 2.1 27.9 1.0 CD M:GLU557 2.2 40.5 1.0 NE2 M:HIS542 2.3 26.2 1.0 NE2 L:HIS229 2.6 28.1 1.0 CE1 M:HIS542 2.7 26.2 1.0 CE1 M:HIS589 3.0 27.9 1.0 CD2 M:HIS589 3.1 27.9 1.0 NE2 L:HIS264 3.5 29.5 1.0 CD2 M:HIS542 3.5 26.2 1.0 CE1 L:HIS229 3.5 28.1 1.0 CD2 L:HIS229 3.6 28.1 1.0 CG M:GLU557 3.6 40.5 1.0 ND1 M:HIS542 3.9 26.2 1.0 ND1 M:HIS589 4.1 27.9 1.0 CG M:HIS589 4.2 27.9 1.0 CG M:HIS542 4.3 26.2 1.0 CD2 L:HIS264 4.4 29.5 1.0 CE1 L:HIS264 4.5 29.5 1.0 CB M:GLU557 4.5 40.5 1.0 CG2 L:VAL233 4.6 28.4 1.0 ND1 L:HIS229 4.7 28.1 1.0 CG L:HIS229 4.7 28.1 1.0

Iron binding site 2 out of 5 in the Cryo-Em Structure of Carotenoid-Depleted Rc-Lh Complex From Roseiflexus Castenholzii at 10,000 Lux


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Cryo-Em Structure of Carotenoid-Depleted Rc-Lh Complex From Roseiflexus Castenholzii at 10,000 Lux within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe501 b:67.5 occ:1.00 FE C:HEM501 0.0 67.5 1.0 NC C:HEM501 2.0 67.5 1.0 NA C:HEM501 2.0 67.5 1.0 ND C:HEM501 2.0 67.5 1.0 NB C:HEM501 2.0 67.5 1.0 NE2 C:HIS122 2.1 69.0 1.0 SD C:MET106 2.2 61.7 1.0 CD2 C:HIS122 2.6 69.0 1.0 C1A C:HEM501 3.0 67.5 1.0 C4D C:HEM501 3.0 67.5 1.0 C4C C:HEM501 3.0 67.5 1.0 C1D C:HEM501 3.0 67.5 1.0 C1B C:HEM501 3.0 67.5 1.0 C4B C:HEM501 3.0 67.5 1.0 C1C C:HEM501 3.1 67.5 1.0 CE C:MET106 3.1 61.7 1.0 C4A C:HEM501 3.1 67.5 1.0 CE1 C:HIS122 3.3 69.0 1.0 CHA C:HEM501 3.4 67.5 1.0 CHD C:HEM501 3.4 67.5 1.0 CHB C:HEM501 3.5 67.5 1.0 CHC C:HEM501 3.5 67.5 1.0 CG C:MET106 3.8 61.7 1.0 CG C:HIS122 3.9 69.0 1.0 CB C:MET106 4.1 61.7 1.0 C2A C:HEM501 4.2 67.5 1.0 C3C C:HEM501 4.2 67.5 1.0 ND1 C:HIS122 4.2 69.0 1.0 C2C C:HEM501 4.2 67.5 1.0 C2D C:HEM501 4.2 67.5 1.0 C3D C:HEM501 4.2 67.5 1.0 C3A C:HEM501 4.2 67.5 1.0 C2B C:HEM501 4.2 67.5 1.0 C3B C:HEM501 4.3 67.5 1.0

Iron binding site 3 out of 5 in the Cryo-Em Structure of Carotenoid-Depleted Rc-Lh Complex From Roseiflexus Castenholzii at 10,000 Lux


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Cryo-Em Structure of Carotenoid-Depleted Rc-Lh Complex From Roseiflexus Castenholzii at 10,000 Lux within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe502 b:51.8 occ:1.00 FE C:HEM502 0.0 51.8 1.0 ND C:HEM502 2.0 51.8 1.0 NA C:HEM502 2.0 51.8 1.0 NC C:HEM502 2.0 51.8 1.0 NB C:HEM502 2.0 51.8 1.0 SD C:MET145 2.1 54.1 1.0 NE2 C:HIS175 2.2 46.2 1.0 C1A C:HEM502 3.0 51.8 1.0 C4D C:HEM502 3.0 51.8 1.0 C4C C:HEM502 3.0 51.8 1.0 C1D C:HEM502 3.0 51.8 1.0 C1B C:HEM502 3.0 51.8 1.0 CE1 C:HIS175 3.0 46.2 1.0 C4B C:HEM502 3.0 51.8 1.0 C1C C:HEM502 3.1 51.8 1.0 C4A C:HEM502 3.1 51.8 1.0 CD2 C:HIS175 3.3 46.2 1.0 CHA C:HEM502 3.3 51.8 1.0 CE C:MET145 3.4 54.1 1.0 CHD C:HEM502 3.4 51.8 1.0 CG C:MET145 3.4 54.1 1.0 CHB C:HEM502 3.5 51.8 1.0 CHC C:HEM502 3.5 51.8 1.0 CB C:MET145 4.0 54.1 1.0 C2A C:HEM502 4.2 51.8 1.0 C3C C:HEM502 4.2 51.8 1.0 C3D C:HEM502 4.2 51.8 1.0 ND1 C:HIS175 4.2 46.2 1.0 C2D C:HEM502 4.2 51.8 1.0 C2C C:HEM502 4.2 51.8 1.0 C3A C:HEM502 4.2 51.8 1.0 C2B C:HEM502 4.2 51.8 1.0 C3B C:HEM502 4.3 51.8 1.0 CG C:HIS175 4.4 46.2 1.0

Iron binding site 4 out of 5 in the Cryo-Em Structure of Carotenoid-Depleted Rc-Lh Complex From Roseiflexus Castenholzii at 10,000 Lux


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Cryo-Em Structure of Carotenoid-Depleted Rc-Lh Complex From Roseiflexus Castenholzii at 10,000 Lux within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe503 b:16.2 occ:1.00 FE C:HEM503 0.0 16.2 1.0 ND C:HEM503 2.0 16.2 1.0 NA C:HEM503 2.0 16.2 1.0 NC C:HEM503 2.0 16.2 1.0 NB C:HEM503 2.0 16.2 1.0 NE2 C:HIS244 2.0 16.9 1.0 SD C:MET229 2.1 16.9 1.0 C1A C:HEM503 2.9 16.2 1.0 C4D C:HEM503 2.9 16.2 1.0 C4C C:HEM503 2.9 16.2 1.0 CD2 C:HIS244 2.9 16.9 1.0 C1D C:HEM503 3.0 16.2 1.0 C4B C:HEM503 3.0 16.2 1.0 C1B C:HEM503 3.0 16.2 1.0 CE1 C:HIS244 3.1 16.9 1.0 C4A C:HEM503 3.1 16.2 1.0 C1C C:HEM503 3.1 16.2 1.0 CG C:MET229 3.2 16.9 1.0 CHA C:HEM503 3.3 16.2 1.0 CHD C:HEM503 3.4 16.2 1.0 CE C:MET229 3.4 16.9 1.0 CHB C:HEM503 3.5 16.2 1.0 CHC C:HEM503 3.5 16.2 1.0 CB C:MET229 4.0 16.9 1.0 CG C:HIS244 4.1 16.9 1.0 ND1 C:HIS244 4.1 16.9 1.0 C2A C:HEM503 4.1 16.2 1.0 C3C C:HEM503 4.2 16.2 1.0 C3D C:HEM503 4.2 16.2 1.0 C3A C:HEM503 4.2 16.2 1.0 C2D C:HEM503 4.2 16.2 1.0 C2B C:HEM503 4.2 16.2 1.0 C2C C:HEM503 4.2 16.2 1.0 C3B C:HEM503 4.2 16.2 1.0 CA C:MET229 4.8 16.9 1.0

Iron binding site 5 out of 5 in the Cryo-Em Structure of Carotenoid-Depleted Rc-Lh Complex From Roseiflexus Castenholzii at 10,000 Lux


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Cryo-Em Structure of Carotenoid-Depleted Rc-Lh Complex From Roseiflexus Castenholzii at 10,000 Lux within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe504 b:34.6 occ:1.00 FE C:HEM504 0.0 34.6 1.0 ND C:HEM504 2.0 34.6 1.0 NA C:HEM504 2.0 34.6 1.0 NC C:HEM504 2.0 34.6 1.0 NB C:HEM504 2.0 34.6 1.0 NE2 C:HIS297 2.1 30.7 1.0 SD C:MET263 2.1 31.8 1.0 C1A C:HEM504 3.0 34.6 1.0 C1D C:HEM504 3.0 34.6 1.0 C4D C:HEM504 3.0 34.6 1.0 C4C C:HEM504 3.0 34.6 1.0 CE1 C:HIS297 3.0 30.7 1.0 C1B C:HEM504 3.0 34.6 1.0 C4B C:HEM504 3.0 34.6 1.0 C4A C:HEM504 3.1 34.6 1.0 C1C C:HEM504 3.1 34.6 1.0 CD2 C:HIS297 3.2 30.7 1.0 CHD C:HEM504 3.3 34.6 1.0 CHA C:HEM504 3.3 34.6 1.0 CHB C:HEM504 3.5 34.6 1.0 CHC C:HEM504 3.5 34.6 1.0 CG C:MET263 3.5 31.8 1.0 CE C:MET263 3.5 31.8 1.0 ND1 C:HIS297 4.1 30.7 1.0 C2A C:HEM504 4.2 34.6 1.0 C3C C:HEM504 4.2 34.6 1.0 C2D C:HEM504 4.2 34.6 1.0 C3D C:HEM504 4.2 34.6 1.0 C3A C:HEM504 4.2 34.6 1.0 C2C C:HEM504 4.2 34.6 1.0 C2B C:HEM504 4.2 34.6 1.0 CG C:HIS297 4.3 30.7 1.0 C3B C:HEM504 4.3 34.6 1.0 CB C:MET263 4.4 31.8 1.0

X.Xu, J.Xin. Cryo-Em Structure of Carotenoid-Depleted Rc-Lh Complex From Roseiflexus Castenholzii To Be Published.