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Iron in PDB 8hua: Serial Synchrotron Crystallography Structure of BA3-Type Cytochrome C Oxidase From Thermus Thermophilus Using A Goniometer Compatible Flow- Cell

Enzymatic activity of Serial Synchrotron Crystallography Structure of BA3-Type Cytochrome C Oxidase From Thermus Thermophilus Using A Goniometer Compatible Flow- Cell

All present enzymatic activity of Serial Synchrotron Crystallography Structure of BA3-Type Cytochrome C Oxidase From Thermus Thermophilus Using A Goniometer Compatible Flow- Cell:
7.1.1.9;

Protein crystallography data

The structure of Serial Synchrotron Crystallography Structure of BA3-Type Cytochrome C Oxidase From Thermus Thermophilus Using A Goniometer Compatible Flow- Cell, PDB code: 8hua was solved by S.Ghosh, D.Zoric, M.Bjelcic, J.Johannesson, E.Sandelin, G.Branden, R.Neutze, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 25.80 / 2.12
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 146.06, 100.17, 96.62, 90, 126.76, 90
R / Rfree (%) 15.2 / 18.4

Other elements in 8hua:

The structure of Serial Synchrotron Crystallography Structure of BA3-Type Cytochrome C Oxidase From Thermus Thermophilus Using A Goniometer Compatible Flow- Cell also contains other interesting chemical elements:

Copper (Cu) 3 atoms

Iron Binding Sites:

The binding sites of Iron atom in the Serial Synchrotron Crystallography Structure of BA3-Type Cytochrome C Oxidase From Thermus Thermophilus Using A Goniometer Compatible Flow- Cell (pdb code 8hua). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Serial Synchrotron Crystallography Structure of BA3-Type Cytochrome C Oxidase From Thermus Thermophilus Using A Goniometer Compatible Flow- Cell, PDB code: 8hua:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 8hua

Go back to Iron Binding Sites List in 8hua
Iron binding site 1 out of 2 in the Serial Synchrotron Crystallography Structure of BA3-Type Cytochrome C Oxidase From Thermus Thermophilus Using A Goniometer Compatible Flow- Cell


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Serial Synchrotron Crystallography Structure of BA3-Type Cytochrome C Oxidase From Thermus Thermophilus Using A Goniometer Compatible Flow- Cell within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe602

b:33.4
occ:1.00
 FE A:HEM602 0.0 33.4 1.0
ND A:HEM602 1.9 36.1 1.0
NA A:HEM602 2.0 35.7 1.0
NE2 A:HIS386 2.0 33.1 1.0
NC A:HEM602 2.1 34.3 1.0
NB A:HEM602 2.1 36.5 1.0
NE2 A:HIS72 2.1 33.7 1.0
C1D A:HEM602 2.9 31.6 1.0
CE1 A:HIS386 3.0 36.5 1.0
C4D A:HEM602 3.0 35.5 1.0
C4B A:HEM602 3.0 35.0 1.0
C1A A:HEM602 3.0 36.6 1.0
C4C A:HEM602 3.0 36.6 1.0
C4A A:HEM602 3.0 34.4 1.0
C1B A:HEM602 3.1 34.8 1.0
C1C A:HEM602 3.1 37.0 1.0
CD2 A:HIS72 3.1 33.4 1.0
CE1 A:HIS72 3.1 34.6 1.0
CD2 A:HIS386 3.1 33.4 1.0
CHD A:HEM602 3.4 33.1 1.0
CHC A:HEM602 3.4 33.0 1.0
CHA A:HEM602 3.4 34.9 1.0
CHB A:HEM602 3.5 32.1 1.0
ND1 A:HIS386 4.1 32.6 1.0
C2D A:HEM602 4.2 34.5 1.0
C3A A:HEM602 4.2 36.1 1.0
C2A A:HEM602 4.2 35.2 1.0
CG A:HIS386 4.2 32.7 1.0
C3D A:HEM602 4.2 32.0 1.0
C3C A:HEM602 4.2 34.6 1.0
ND1 A:HIS72 4.2 33.4 1.0
C2C A:HEM602 4.2 34.3 1.0
CG A:HIS72 4.2 31.1 1.0
C3B A:HEM602 4.3 33.6 1.0
C2B A:HEM602 4.3 34.8 1.0
OE1 A:GLN42 4.6 38.1 1.0

Iron binding site 2 out of 2 in 8hua

Go back to Iron Binding Sites List in 8hua
Iron binding site 2 out of 2 in the Serial Synchrotron Crystallography Structure of BA3-Type Cytochrome C Oxidase From Thermus Thermophilus Using A Goniometer Compatible Flow- Cell


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Serial Synchrotron Crystallography Structure of BA3-Type Cytochrome C Oxidase From Thermus Thermophilus Using A Goniometer Compatible Flow- Cell within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe603

b:36.3
occ:1.00
 FE A:HAS603 0.0 36.3 1.0
ND A:HAS603 2.1 35.7 1.0
NB A:HAS603 2.1 35.5 1.0
NC A:HAS603 2.1 34.1 1.0
NA A:HAS603 2.1 33.1 1.0
NE2 A:HIS384 2.3 33.9 1.0
C1D A:HAS603 3.1 35.8 1.0
C1B A:HAS603 3.1 34.6 1.0
C4B A:HAS603 3.1 34.6 1.0
C4D A:HAS603 3.1 30.7 1.0
C4A A:HAS603 3.1 29.2 1.0
C1A A:HAS603 3.1 30.4 1.0
O A:HOH752 3.1 21.6 1.0
C4C A:HAS603 3.1 31.1 1.0
C1C A:HAS603 3.1 31.9 1.0
CD2 A:HIS384 3.2 43.6 1.0
CE1 A:HIS384 3.3 43.7 1.0
CHA A:HAS603 3.5 31.6 1.0
CHC A:HAS603 3.5 33.5 1.0
CHB A:HAS603 3.5 34.8 1.0
CHD A:HAS603 3.5 31.6 1.0
C2D A:HAS603 4.3 34.8 1.0
C3C A:HAS603 4.4 32.8 1.0
C3D A:HAS603 4.4 33.2 1.0
ND1 A:HIS384 4.4 37.5 1.0
CG A:HIS384 4.4 39.7 1.0
C2B A:HAS603 4.4 34.1 1.0
C2C A:HAS603 4.4 33.6 1.0
C3B A:HAS603 4.4 37.2 1.0
C2A A:HAS603 4.4 31.2 1.0
C3A A:HAS603 4.4 30.4 1.0
ND2 A:ASN366 5.0 41.4 1.0
CU A:CU601 5.0 36.6 1.0

Reference:

S.Ghosh, D.Zoric, M.Bjelcic, J.Johannesson, E.Sandelin, P.Borjesson, P.Dahl, G.Branden, R.Neutze. A Simple Goniometer-Compatible Flow-Cell For Serial Synchrotron Crystallography J.Appl.Crystallogr. 2023.
ISSN: ESSN 1600-5767
Page generated: Sat Aug 10 05:31:07 2024

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