Iron in PDB 8hua: Serial Synchrotron Crystallography Structure of BA3-Type Cytochrome C Oxidase From Thermus Thermophilus Using A Goniometer Compatible Flow- Cell

Enzymatic activity of Serial Synchrotron Crystallography Structure of BA3-Type Cytochrome C Oxidase From Thermus Thermophilus Using A Goniometer Compatible Flow- Cell

All present enzymatic activity of Serial Synchrotron Crystallography Structure of BA3-Type Cytochrome C Oxidase From Thermus Thermophilus Using A Goniometer Compatible Flow- Cell:
7.1.1.9;

Protein crystallography data

The structure of Serial Synchrotron Crystallography Structure of BA3-Type Cytochrome C Oxidase From Thermus Thermophilus Using A Goniometer Compatible Flow- Cell, PDB code: 8hua was solved by S.Ghosh, D.Zoric, M.Bjelcic, J.Johannesson, E.Sandelin, G.Branden, R.Neutze, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 25.80 / 2.12
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 146.06, 100.17, 96.62, 90, 126.76, 90
R / Rfree (%) 15.2 / 18.4

Other elements in 8hua:

The structure of Serial Synchrotron Crystallography Structure of BA3-Type Cytochrome C Oxidase From Thermus Thermophilus Using A Goniometer Compatible Flow- Cell also contains other interesting chemical elements:

Copper (Cu) 3 atoms

Iron Binding Sites:

The binding sites of Iron atom in the Serial Synchrotron Crystallography Structure of BA3-Type Cytochrome C Oxidase From Thermus Thermophilus Using A Goniometer Compatible Flow- Cell (pdb code 8hua). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Serial Synchrotron Crystallography Structure of BA3-Type Cytochrome C Oxidase From Thermus Thermophilus Using A Goniometer Compatible Flow- Cell, PDB code: 8hua:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 8hua

Go back to Iron Binding Sites List in 8hua
Iron binding site 1 out of 2 in the Serial Synchrotron Crystallography Structure of BA3-Type Cytochrome C Oxidase From Thermus Thermophilus Using A Goniometer Compatible Flow- Cell


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Serial Synchrotron Crystallography Structure of BA3-Type Cytochrome C Oxidase From Thermus Thermophilus Using A Goniometer Compatible Flow- Cell within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe602

b:33.4
occ:1.00
 FE A:HEM602 0.0 33.4 1.0
ND A:HEM602 1.9 36.1 1.0
NA A:HEM602 2.0 35.7 1.0
NE2 A:HIS386 2.0 33.1 1.0
NC A:HEM602 2.1 34.3 1.0
NB A:HEM602 2.1 36.5 1.0
NE2 A:HIS72 2.1 33.7 1.0
C1D A:HEM602 2.9 31.6 1.0
CE1 A:HIS386 3.0 36.5 1.0
C4D A:HEM602 3.0 35.5 1.0
C4B A:HEM602 3.0 35.0 1.0
C1A A:HEM602 3.0 36.6 1.0
C4C A:HEM602 3.0 36.6 1.0
C4A A:HEM602 3.0 34.4 1.0
C1B A:HEM602 3.1 34.8 1.0
C1C A:HEM602 3.1 37.0 1.0
CD2 A:HIS72 3.1 33.4 1.0
CE1 A:HIS72 3.1 34.6 1.0
CD2 A:HIS386 3.1 33.4 1.0
CHD A:HEM602 3.4 33.1 1.0
CHC A:HEM602 3.4 33.0 1.0
CHA A:HEM602 3.4 34.9 1.0
CHB A:HEM602 3.5 32.1 1.0
ND1 A:HIS386 4.1 32.6 1.0
C2D A:HEM602 4.2 34.5 1.0
C3A A:HEM602 4.2 36.1 1.0
C2A A:HEM602 4.2 35.2 1.0
CG A:HIS386 4.2 32.7 1.0
C3D A:HEM602 4.2 32.0 1.0
C3C A:HEM602 4.2 34.6 1.0
ND1 A:HIS72 4.2 33.4 1.0
C2C A:HEM602 4.2 34.3 1.0
CG A:HIS72 4.2 31.1 1.0
C3B A:HEM602 4.3 33.6 1.0
C2B A:HEM602 4.3 34.8 1.0
OE1 A:GLN42 4.6 38.1 1.0

Iron binding site 2 out of 2 in 8hua

Go back to Iron Binding Sites List in 8hua
Iron binding site 2 out of 2 in the Serial Synchrotron Crystallography Structure of BA3-Type Cytochrome C Oxidase From Thermus Thermophilus Using A Goniometer Compatible Flow- Cell


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Serial Synchrotron Crystallography Structure of BA3-Type Cytochrome C Oxidase From Thermus Thermophilus Using A Goniometer Compatible Flow- Cell within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe603

b:36.3
occ:1.00
 FE A:HAS603 0.0 36.3 1.0
ND A:HAS603 2.1 35.7 1.0
NB A:HAS603 2.1 35.5 1.0
NC A:HAS603 2.1 34.1 1.0
NA A:HAS603 2.1 33.1 1.0
NE2 A:HIS384 2.3 33.9 1.0
C1D A:HAS603 3.1 35.8 1.0
C1B A:HAS603 3.1 34.6 1.0
C4B A:HAS603 3.1 34.6 1.0
C4D A:HAS603 3.1 30.7 1.0
C4A A:HAS603 3.1 29.2 1.0
C1A A:HAS603 3.1 30.4 1.0
O A:HOH752 3.1 21.6 1.0
C4C A:HAS603 3.1 31.1 1.0
C1C A:HAS603 3.1 31.9 1.0
CD2 A:HIS384 3.2 43.6 1.0
CE1 A:HIS384 3.3 43.7 1.0
CHA A:HAS603 3.5 31.6 1.0
CHC A:HAS603 3.5 33.5 1.0
CHB A:HAS603 3.5 34.8 1.0
CHD A:HAS603 3.5 31.6 1.0
C2D A:HAS603 4.3 34.8 1.0
C3C A:HAS603 4.4 32.8 1.0
C3D A:HAS603 4.4 33.2 1.0
ND1 A:HIS384 4.4 37.5 1.0
CG A:HIS384 4.4 39.7 1.0
C2B A:HAS603 4.4 34.1 1.0
C2C A:HAS603 4.4 33.6 1.0
C3B A:HAS603 4.4 37.2 1.0
C2A A:HAS603 4.4 31.2 1.0
C3A A:HAS603 4.4 30.4 1.0
ND2 A:ASN366 5.0 41.4 1.0
CU A:CU601 5.0 36.6 1.0

Reference:

S.Ghosh, D.Zoric, M.Bjelcic, J.Johannesson, E.Sandelin, P.Borjesson, P.Dahl, G.Branden, R.Neutze. A Simple Goniometer-Compatible Flow-Cell For Serial Synchrotron Crystallography J.Appl.Crystallogr. 2023.
ISSN: ESSN 1600-5767
Page generated: Wed Apr 5 08:59:11 2023

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy