Iron in PDB 8iun: Cryo-Em Structure of the Crt-Less Rc-Lh Core Complex From Roseiflexus Castenholzii
Other elements in 8iun:
The structure of Cryo-Em Structure of the Crt-Less Rc-Lh Core Complex From Roseiflexus Castenholzii also contains other interesting chemical elements:
Iron Binding Sites:
The binding sites of Iron atom in the Cryo-Em Structure of the Crt-Less Rc-Lh Core Complex From Roseiflexus Castenholzii
(pdb code 8iun). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the
Cryo-Em Structure of the Crt-Less Rc-Lh Core Complex From Roseiflexus Castenholzii, PDB code: 8iun:
Jump to Iron binding site number:
1;
2;
3;
4;
Iron binding site 1 out
of 4 in 8iun
Go back to
Iron Binding Sites List in 8iun
Iron binding site 1 out
of 4 in the Cryo-Em Structure of the Crt-Less Rc-Lh Core Complex From Roseiflexus Castenholzii
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Cryo-Em Structure of the Crt-Less Rc-Lh Core Complex From Roseiflexus Castenholzii within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe501
b:41.0
occ:1.00
|
FE
|
C:HEC501
|
0.0
|
41.0
|
1.0
|
NC
|
C:HEC501
|
2.0
|
41.0
|
1.0
|
NA
|
C:HEC501
|
2.1
|
41.0
|
1.0
|
NE2
|
C:HIS122
|
2.1
|
43.0
|
1.0
|
NB
|
C:HEC501
|
2.1
|
41.0
|
1.0
|
ND
|
C:HEC501
|
2.1
|
41.0
|
1.0
|
CD2
|
C:HIS122
|
2.6
|
43.0
|
1.0
|
SD
|
C:MET106
|
2.7
|
34.0
|
1.0
|
C1A
|
C:HEC501
|
3.1
|
41.0
|
1.0
|
C1C
|
C:HEC501
|
3.1
|
41.0
|
1.0
|
C4D
|
C:HEC501
|
3.1
|
41.0
|
1.0
|
C4B
|
C:HEC501
|
3.1
|
41.0
|
1.0
|
C4C
|
C:HEC501
|
3.1
|
41.0
|
1.0
|
C1D
|
C:HEC501
|
3.1
|
41.0
|
1.0
|
C4A
|
C:HEC501
|
3.1
|
41.0
|
1.0
|
C1B
|
C:HEC501
|
3.1
|
41.0
|
1.0
|
CE1
|
C:HIS122
|
3.3
|
43.0
|
1.0
|
CHA
|
C:HEC501
|
3.4
|
41.0
|
1.0
|
CHC
|
C:HEC501
|
3.4
|
41.0
|
1.0
|
CHD
|
C:HEC501
|
3.4
|
41.0
|
1.0
|
CHB
|
C:HEC501
|
3.5
|
41.0
|
1.0
|
CG
|
C:MET106
|
3.7
|
34.0
|
1.0
|
CG
|
C:HIS122
|
3.9
|
43.0
|
1.0
|
CE
|
C:MET106
|
3.9
|
34.0
|
1.0
|
ND1
|
C:HIS122
|
4.2
|
43.0
|
1.0
|
CB
|
C:MET106
|
4.2
|
34.0
|
1.0
|
C2A
|
C:HEC501
|
4.3
|
41.0
|
1.0
|
C2C
|
C:HEC501
|
4.3
|
41.0
|
1.0
|
C3A
|
C:HEC501
|
4.3
|
41.0
|
1.0
|
C3C
|
C:HEC501
|
4.3
|
41.0
|
1.0
|
C3B
|
C:HEC501
|
4.3
|
41.0
|
1.0
|
C2B
|
C:HEC501
|
4.3
|
41.0
|
1.0
|
C3D
|
C:HEC501
|
4.3
|
41.0
|
1.0
|
C2D
|
C:HEC501
|
4.3
|
41.0
|
1.0
|
|
Iron binding site 2 out
of 4 in 8iun
Go back to
Iron Binding Sites List in 8iun
Iron binding site 2 out
of 4 in the Cryo-Em Structure of the Crt-Less Rc-Lh Core Complex From Roseiflexus Castenholzii
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Cryo-Em Structure of the Crt-Less Rc-Lh Core Complex From Roseiflexus Castenholzii within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe502
b:29.8
occ:1.00
|
FE
|
C:HEC502
|
0.0
|
29.8
|
1.0
|
NC
|
C:HEC502
|
2.1
|
29.8
|
1.0
|
NA
|
C:HEC502
|
2.1
|
29.8
|
1.0
|
ND
|
C:HEC502
|
2.1
|
29.8
|
1.0
|
NB
|
C:HEC502
|
2.1
|
29.8
|
1.0
|
NE2
|
C:HIS175
|
2.3
|
23.4
|
1.0
|
SD
|
C:MET145
|
3.0
|
26.4
|
1.0
|
C4D
|
C:HEC502
|
3.1
|
29.8
|
1.0
|
C1A
|
C:HEC502
|
3.1
|
29.8
|
1.0
|
C1C
|
C:HEC502
|
3.1
|
29.8
|
1.0
|
C4C
|
C:HEC502
|
3.1
|
29.8
|
1.0
|
C1D
|
C:HEC502
|
3.1
|
29.8
|
1.0
|
C4B
|
C:HEC502
|
3.1
|
29.8
|
1.0
|
C4A
|
C:HEC502
|
3.1
|
29.8
|
1.0
|
C1B
|
C:HEC502
|
3.1
|
29.8
|
1.0
|
CD2
|
C:HIS175
|
3.2
|
23.4
|
1.0
|
CE1
|
C:HIS175
|
3.3
|
23.4
|
1.0
|
CHA
|
C:HEC502
|
3.4
|
29.8
|
1.0
|
CHD
|
C:HEC502
|
3.4
|
29.8
|
1.0
|
CHC
|
C:HEC502
|
3.4
|
29.8
|
1.0
|
CHB
|
C:HEC502
|
3.5
|
29.8
|
1.0
|
CG
|
C:MET145
|
3.8
|
26.4
|
1.0
|
CE
|
C:MET145
|
3.9
|
26.4
|
1.0
|
C3D
|
C:HEC502
|
4.3
|
29.8
|
1.0
|
C2A
|
C:HEC502
|
4.3
|
29.8
|
1.0
|
CB
|
C:MET145
|
4.3
|
26.4
|
1.0
|
C2C
|
C:HEC502
|
4.3
|
29.8
|
1.0
|
C3C
|
C:HEC502
|
4.3
|
29.8
|
1.0
|
C2D
|
C:HEC502
|
4.3
|
29.8
|
1.0
|
C3A
|
C:HEC502
|
4.3
|
29.8
|
1.0
|
C3B
|
C:HEC502
|
4.3
|
29.8
|
1.0
|
C2B
|
C:HEC502
|
4.3
|
29.8
|
1.0
|
CG
|
C:HIS175
|
4.4
|
23.4
|
1.0
|
ND1
|
C:HIS175
|
4.4
|
23.4
|
1.0
|
|
Iron binding site 3 out
of 4 in 8iun
Go back to
Iron Binding Sites List in 8iun
Iron binding site 3 out
of 4 in the Cryo-Em Structure of the Crt-Less Rc-Lh Core Complex From Roseiflexus Castenholzii
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Cryo-Em Structure of the Crt-Less Rc-Lh Core Complex From Roseiflexus Castenholzii within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe503
b:29.8
occ:1.00
|
FE
|
C:HEC503
|
0.0
|
29.8
|
1.0
|
ND
|
C:HEC503
|
2.1
|
29.8
|
1.0
|
NC
|
C:HEC503
|
2.1
|
29.8
|
1.0
|
NB
|
C:HEC503
|
2.1
|
29.8
|
1.0
|
NA
|
C:HEC503
|
2.1
|
29.8
|
1.0
|
NE2
|
C:HIS244
|
2.2
|
17.5
|
1.0
|
CD2
|
C:HIS244
|
2.9
|
17.5
|
1.0
|
SD
|
C:MET229
|
3.0
|
16.7
|
1.0
|
C4D
|
C:HEC503
|
3.1
|
29.8
|
1.0
|
C1D
|
C:HEC503
|
3.1
|
29.8
|
1.0
|
C1B
|
C:HEC503
|
3.1
|
29.8
|
1.0
|
C1C
|
C:HEC503
|
3.1
|
29.8
|
1.0
|
C4B
|
C:HEC503
|
3.1
|
29.8
|
1.0
|
C4C
|
C:HEC503
|
3.1
|
29.8
|
1.0
|
C4A
|
C:HEC503
|
3.1
|
29.8
|
1.0
|
C1A
|
C:HEC503
|
3.1
|
29.8
|
1.0
|
CE1
|
C:HIS244
|
3.3
|
17.5
|
1.0
|
CHD
|
C:HEC503
|
3.4
|
29.8
|
1.0
|
CHA
|
C:HEC503
|
3.4
|
29.8
|
1.0
|
CHC
|
C:HEC503
|
3.4
|
29.8
|
1.0
|
CHB
|
C:HEC503
|
3.5
|
29.8
|
1.0
|
CG
|
C:MET229
|
3.9
|
16.7
|
1.0
|
CE
|
C:MET229
|
4.0
|
16.7
|
1.0
|
CG
|
C:HIS244
|
4.1
|
17.5
|
1.0
|
ND1
|
C:HIS244
|
4.2
|
17.5
|
1.0
|
C2B
|
C:HEC503
|
4.3
|
29.8
|
1.0
|
C3D
|
C:HEC503
|
4.3
|
29.8
|
1.0
|
C3A
|
C:HEC503
|
4.3
|
29.8
|
1.0
|
C2D
|
C:HEC503
|
4.3
|
29.8
|
1.0
|
C3B
|
C:HEC503
|
4.3
|
29.8
|
1.0
|
C2A
|
C:HEC503
|
4.3
|
29.8
|
1.0
|
C2C
|
C:HEC503
|
4.3
|
29.8
|
1.0
|
C3C
|
C:HEC503
|
4.3
|
29.8
|
1.0
|
CB
|
C:MET229
|
4.6
|
16.7
|
1.0
|
|
Iron binding site 4 out
of 4 in 8iun
Go back to
Iron Binding Sites List in 8iun
Iron binding site 4 out
of 4 in the Cryo-Em Structure of the Crt-Less Rc-Lh Core Complex From Roseiflexus Castenholzii
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Cryo-Em Structure of the Crt-Less Rc-Lh Core Complex From Roseiflexus Castenholzii within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe504
b:29.8
occ:1.00
|
FE
|
C:HEC504
|
0.0
|
29.8
|
1.0
|
NA
|
C:HEC504
|
2.1
|
29.8
|
1.0
|
NC
|
C:HEC504
|
2.1
|
29.8
|
1.0
|
NB
|
C:HEC504
|
2.1
|
29.8
|
1.0
|
ND
|
C:HEC504
|
2.1
|
29.8
|
1.0
|
NE2
|
C:HIS297
|
2.1
|
14.7
|
1.0
|
SD
|
C:MET263
|
2.9
|
14.7
|
1.0
|
CE1
|
C:HIS297
|
3.1
|
14.7
|
1.0
|
C1A
|
C:HEC504
|
3.1
|
29.8
|
1.0
|
C4D
|
C:HEC504
|
3.1
|
29.8
|
1.0
|
C1C
|
C:HEC504
|
3.1
|
29.8
|
1.0
|
C4A
|
C:HEC504
|
3.1
|
29.8
|
1.0
|
C4B
|
C:HEC504
|
3.1
|
29.8
|
1.0
|
C1D
|
C:HEC504
|
3.1
|
29.8
|
1.0
|
C4C
|
C:HEC504
|
3.1
|
29.8
|
1.0
|
C1B
|
C:HEC504
|
3.1
|
29.8
|
1.0
|
CD2
|
C:HIS297
|
3.1
|
14.7
|
1.0
|
CHA
|
C:HEC504
|
3.4
|
29.8
|
1.0
|
CHC
|
C:HEC504
|
3.4
|
29.8
|
1.0
|
CHD
|
C:HEC504
|
3.5
|
29.8
|
1.0
|
CHB
|
C:HEC504
|
3.5
|
29.8
|
1.0
|
CG
|
C:MET263
|
3.7
|
14.7
|
1.0
|
ND1
|
C:HIS297
|
4.2
|
14.7
|
1.0
|
CG
|
C:HIS297
|
4.3
|
14.7
|
1.0
|
CB
|
C:MET263
|
4.3
|
14.7
|
1.0
|
C2A
|
C:HEC504
|
4.3
|
29.8
|
1.0
|
C3A
|
C:HEC504
|
4.3
|
29.8
|
1.0
|
C2C
|
C:HEC504
|
4.3
|
29.8
|
1.0
|
C3D
|
C:HEC504
|
4.3
|
29.8
|
1.0
|
C2B
|
C:HEC504
|
4.3
|
29.8
|
1.0
|
C3C
|
C:HEC504
|
4.3
|
29.8
|
1.0
|
C3B
|
C:HEC504
|
4.3
|
29.8
|
1.0
|
C2D
|
C:HEC504
|
4.3
|
29.8
|
1.0
|
CE
|
C:MET263
|
4.4
|
14.7
|
1.0
|
|
Reference:
C.H.Qi,
G.L.Wang,
F.F.Wang,
Y.Xin,
M.J.Zou,
M.T.Madigan,
Z.Y.Wang-Otomo,
F.Ma,
L.J.Yu.
New Insights on the Photocomplex of Roseiflexus Castenholzii Revealed From Comparisons of Native and Carotenoid-Depleted Complexes. J.Biol.Chem. V. 299 05057 2023.
ISSN: ESSN 1083-351X
PubMed: 37468106
DOI: 10.1016/J.JBC.2023.105057
Page generated: Sat Aug 10 06:25:07 2024
|