Iron in PDB 8j5k: Structural Insights Into Photosystem II Supercomplex and Trimeric Fcp Antennae of A Centric Diatom Cyclotella Meneghiniana

The structure of Structural Insights Into Photosystem II Supercomplex and Trimeric Fcp Antennae of A Centric Diatom Cyclotella Meneghiniana also contains other interesting chemical elements:

Magnesium	(Mg)	206 atoms
Manganese	(Mn)	8 atoms
Calcium	(Ca)	2 atoms
Chlorine	(Cl)	2 atoms

The binding sites of Iron atom in the Structural Insights Into Photosystem II Supercomplex and Trimeric Fcp Antennae of A Centric Diatom Cyclotella Meneghiniana (pdb code 8j5k). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 6 binding sites of Iron where determined in the Structural Insights Into Photosystem II Supercomplex and Trimeric Fcp Antennae of A Centric Diatom Cyclotella Meneghiniana, PDB code: 8j5k:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6;

Iron binding site 1 out of 6 in the Structural Insights Into Photosystem II Supercomplex and Trimeric Fcp Antennae of A Centric Diatom Cyclotella Meneghiniana


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Structural Insights Into Photosystem II Supercomplex and Trimeric Fcp Antennae of A Centric Diatom Cyclotella Meneghiniana within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe402 b:84.8 occ:1.00 O3 D:BCT402 2.5 98.7 1.0 NE2 A:HIS215 2.6 78.8 1.0 O2 D:BCT402 2.6 98.7 1.0 NE2 A:HIS272 2.6 80.8 1.0 NE2 D:HIS214 2.6 71.9 1.0 NE2 D:HIS268 2.7 81.0 1.0 C D:BCT402 3.0 98.7 1.0 CE1 A:HIS215 3.3 78.8 1.0 CE1 A:HIS272 3.4 80.8 1.0 CE1 D:HIS214 3.4 71.9 1.0 CE1 D:HIS268 3.6 81.0 1.0 CD2 D:HIS268 3.6 81.0 1.0 CD2 A:HIS272 3.7 80.8 1.0 CD2 D:HIS214 3.7 71.9 1.0 CD2 A:HIS215 3.7 78.8 1.0 O1 D:BCT402 4.2 98.7 1.0 ND1 A:HIS215 4.5 78.8 1.0 ND1 A:HIS272 4.6 80.8 1.0 ND1 D:HIS214 4.6 71.9 1.0 OH D:TYR244 4.7 94.2 1.0 CG2 A:VAL219 4.7 88.8 1.0 CG A:HIS215 4.7 78.8 1.0 ND1 D:HIS268 4.7 81.0 1.0 CG A:HIS272 4.8 80.8 1.0 CG D:HIS214 4.8 71.9 1.0 CG D:HIS268 4.8 81.0 1.0 CG2 D:VAL218 4.8 78.2 1.0

Iron binding site 2 out of 6 in the Structural Insights Into Photosystem II Supercomplex and Trimeric Fcp Antennae of A Centric Diatom Cyclotella Meneghiniana


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Structural Insights Into Photosystem II Supercomplex and Trimeric Fcp Antennae of A Centric Diatom Cyclotella Meneghiniana within 5.0Å range: probe atom residue distance (Å) B Occ F:Fe101 b:109.3 occ:1.00 FE F:HEM101 0.0 109.3 1.0 NC F:HEM101 2.0 109.3 1.0 NA F:HEM101 2.0 109.3 1.0 NB F:HEM101 2.0 109.3 1.0 ND F:HEM101 2.0 109.3 1.0 NE2 F:HIS24 2.5 103.7 1.0 NE2 E:HIS23 2.5 111.4 1.0 CE1 F:HIS24 2.9 103.7 1.0 CE1 E:HIS23 2.9 111.4 1.0 C4C F:HEM101 3.0 109.3 1.0 C1D F:HEM101 3.0 109.3 1.0 C1B F:HEM101 3.0 109.3 1.0 C1C F:HEM101 3.0 109.3 1.0 C4B F:HEM101 3.0 109.3 1.0 C4A F:HEM101 3.0 109.3 1.0 C1A F:HEM101 3.1 109.3 1.0 C4D F:HEM101 3.1 109.3 1.0 CHD F:HEM101 3.4 109.3 1.0 CHB F:HEM101 3.4 109.3 1.0 CHC F:HEM101 3.4 109.3 1.0 CHA F:HEM101 3.4 109.3 1.0 CD2 F:HIS24 3.6 103.7 1.0 CD2 E:HIS23 3.7 111.4 1.0 ND1 F:HIS24 4.0 103.7 1.0 ND1 E:HIS23 4.1 111.4 1.0 C2D F:HEM101 4.2 109.3 1.0 C2B F:HEM101 4.2 109.3 1.0 C3C F:HEM101 4.2 109.3 1.0 C3D F:HEM101 4.2 109.3 1.0 C3B F:HEM101 4.2 109.3 1.0 C2C F:HEM101 4.2 109.3 1.0 C3A F:HEM101 4.3 109.3 1.0 C2A F:HEM101 4.3 109.3 1.0 CG F:HIS24 4.4 103.7 1.0 CG E:HIS23 4.5 111.4 1.0 NE1 F:TRP20 4.7 108.3 1.0

Iron binding site 3 out of 6 in the Structural Insights Into Photosystem II Supercomplex and Trimeric Fcp Antennae of A Centric Diatom Cyclotella Meneghiniana


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Structural Insights Into Photosystem II Supercomplex and Trimeric Fcp Antennae of A Centric Diatom Cyclotella Meneghiniana within 5.0Å range: probe atom residue distance (Å) B Occ V:Fe201 b:98.0 occ:1.00 FE V:HEM201 0.0 98.0 1.0 NB V:HEM201 2.0 98.0 1.0 ND V:HEM201 2.0 98.0 1.0 NA V:HEM201 2.0 98.0 1.0 NC V:HEM201 2.0 98.0 1.0 NE2 V:HIS41 2.5 96.2 1.0 NE2 V:HIS92 2.5 99.7 1.0 C1B V:HEM201 3.0 98.0 1.0 C4A V:HEM201 3.0 98.0 1.0 C4B V:HEM201 3.0 98.0 1.0 C1D V:HEM201 3.0 98.0 1.0 C1C V:HEM201 3.0 98.0 1.0 C4D V:HEM201 3.0 98.0 1.0 C4C V:HEM201 3.1 98.0 1.0 C1A V:HEM201 3.1 98.0 1.0 CD2 V:HIS41 3.2 96.2 1.0 CHB V:HEM201 3.3 98.0 1.0 CD2 V:HIS92 3.3 99.7 1.0 CHC V:HEM201 3.4 98.0 1.0 CHD V:HEM201 3.4 98.0 1.0 CHA V:HEM201 3.4 98.0 1.0 CE1 V:HIS92 3.5 99.7 1.0 CE1 V:HIS41 3.6 96.2 1.0 C2B V:HEM201 4.2 98.0 1.0 C3A V:HEM201 4.2 98.0 1.0 C3B V:HEM201 4.2 98.0 1.0 C2A V:HEM201 4.2 98.0 1.0 C2D V:HEM201 4.2 98.0 1.0 C2C V:HEM201 4.2 98.0 1.0 C3D V:HEM201 4.2 98.0 1.0 C3C V:HEM201 4.3 98.0 1.0 CG V:HIS41 4.4 96.2 1.0 ND1 V:HIS41 4.5 96.2 1.0 CG V:HIS92 4.5 99.7 1.0 ND1 V:HIS92 4.6 99.7 1.0

Iron binding site 4 out of 6 in the Structural Insights Into Photosystem II Supercomplex and Trimeric Fcp Antennae of A Centric Diatom Cyclotella Meneghiniana


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Structural Insights Into Photosystem II Supercomplex and Trimeric Fcp Antennae of A Centric Diatom Cyclotella Meneghiniana within 5.0Å range: probe atom residue distance (Å) B Occ a:Fe402 b:84.8 occ:1.00 O3 d:BCT402 2.5 98.7 1.0 NE2 a:HIS215 2.6 78.8 1.0 O2 d:BCT402 2.6 98.7 1.0 NE2 a:HIS272 2.6 80.8 1.0 NE2 d:HIS214 2.6 71.9 1.0 NE2 d:HIS268 2.7 81.0 1.0 C d:BCT402 3.0 98.7 1.0 CE1 a:HIS215 3.3 78.8 1.0 CE1 a:HIS272 3.4 80.8 1.0 CE1 d:HIS214 3.4 71.9 1.0 CE1 d:HIS268 3.6 81.0 1.0 CD2 d:HIS268 3.6 81.0 1.0 CD2 a:HIS272 3.7 80.8 1.0 CD2 d:HIS214 3.7 71.9 1.0 CD2 a:HIS215 3.7 78.8 1.0 O1 d:BCT402 4.2 98.7 1.0 ND1 a:HIS215 4.5 78.8 1.0 ND1 a:HIS272 4.6 80.8 1.0 ND1 d:HIS214 4.6 71.9 1.0 OH d:TYR244 4.7 94.2 1.0 CG2 a:VAL219 4.7 88.8 1.0 CG a:HIS215 4.7 78.8 1.0 ND1 d:HIS268 4.7 81.0 1.0 CG a:HIS272 4.8 80.8 1.0 CG d:HIS214 4.8 71.9 1.0 CG d:HIS268 4.8 81.0 1.0 CG2 d:VAL218 4.8 78.2 1.0

Iron binding site 5 out of 6 in the Structural Insights Into Photosystem II Supercomplex and Trimeric Fcp Antennae of A Centric Diatom Cyclotella Meneghiniana


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Structural Insights Into Photosystem II Supercomplex and Trimeric Fcp Antennae of A Centric Diatom Cyclotella Meneghiniana within 5.0Å range: probe atom residue distance (Å) B Occ f:Fe101 b:109.3 occ:1.00 FE f:HEM101 0.0 109.3 1.0 NC f:HEM101 2.0 109.3 1.0 NA f:HEM101 2.0 109.3 1.0 NB f:HEM101 2.0 109.3 1.0 ND f:HEM101 2.0 109.3 1.0 NE2 f:HIS24 2.5 103.7 1.0 NE2 e:HIS23 2.5 111.4 1.0 CE1 f:HIS24 2.9 103.7 1.0 CE1 e:HIS23 2.9 111.4 1.0 C4C f:HEM101 3.0 109.3 1.0 C1D f:HEM101 3.0 109.3 1.0 C1B f:HEM101 3.0 109.3 1.0 C1C f:HEM101 3.0 109.3 1.0 C4B f:HEM101 3.0 109.3 1.0 C4A f:HEM101 3.0 109.3 1.0 C1A f:HEM101 3.1 109.3 1.0 C4D f:HEM101 3.1 109.3 1.0 CHD f:HEM101 3.4 109.3 1.0 CHB f:HEM101 3.4 109.3 1.0 CHC f:HEM101 3.4 109.3 1.0 CHA f:HEM101 3.4 109.3 1.0 CD2 f:HIS24 3.6 103.7 1.0 CD2 e:HIS23 3.7 111.4 1.0 ND1 f:HIS24 4.0 103.7 1.0 ND1 e:HIS23 4.1 111.4 1.0 C2D f:HEM101 4.2 109.3 1.0 C2B f:HEM101 4.2 109.3 1.0 C3C f:HEM101 4.2 109.3 1.0 C3D f:HEM101 4.2 109.3 1.0 C3B f:HEM101 4.2 109.3 1.0 C2C f:HEM101 4.2 109.3 1.0 C3A f:HEM101 4.3 109.3 1.0 C2A f:HEM101 4.3 109.3 1.0 CG f:HIS24 4.4 103.7 1.0 CG e:HIS23 4.5 111.4 1.0 NE1 f:TRP20 4.7 108.3 1.0

Iron binding site 6 out of 6 in the Structural Insights Into Photosystem II Supercomplex and Trimeric Fcp Antennae of A Centric Diatom Cyclotella Meneghiniana


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Structural Insights Into Photosystem II Supercomplex and Trimeric Fcp Antennae of A Centric Diatom Cyclotella Meneghiniana within 5.0Å range: probe atom residue distance (Å) B Occ v:Fe201 b:98.0 occ:1.00 FE v:HEM201 0.0 98.0 1.0 NB v:HEM201 2.0 98.0 1.0 ND v:HEM201 2.0 98.0 1.0 NA v:HEM201 2.0 98.0 1.0 NC v:HEM201 2.0 98.0 1.0 NE2 v:HIS41 2.5 96.2 1.0 NE2 v:HIS92 2.5 99.7 1.0 C1B v:HEM201 3.0 98.0 1.0 C4A v:HEM201 3.0 98.0 1.0 C4B v:HEM201 3.0 98.0 1.0 C1D v:HEM201 3.0 98.0 1.0 C1C v:HEM201 3.0 98.0 1.0 C4D v:HEM201 3.0 98.0 1.0 C4C v:HEM201 3.1 98.0 1.0 C1A v:HEM201 3.1 98.0 1.0 CD2 v:HIS41 3.2 96.2 1.0 CHB v:HEM201 3.3 98.0 1.0 CD2 v:HIS92 3.3 99.7 1.0 CHC v:HEM201 3.4 98.0 1.0 CHD v:HEM201 3.4 98.0 1.0 CHA v:HEM201 3.4 98.0 1.0 CE1 v:HIS92 3.5 99.7 1.0 CE1 v:HIS41 3.6 96.2 1.0 C2B v:HEM201 4.2 98.0 1.0 C3A v:HEM201 4.2 98.0 1.0 C3B v:HEM201 4.2 98.0 1.0 C2A v:HEM201 4.2 98.0 1.0 C2D v:HEM201 4.2 98.0 1.0 C2C v:HEM201 4.2 98.0 1.0 C3D v:HEM201 4.2 98.0 1.0 C3C v:HEM201 4.3 98.0 1.0 CG v:HIS41 4.4 96.2 1.0 ND1 v:HIS41 4.5 96.2 1.0 CG v:HIS92 4.5 99.7 1.0 ND1 v:HIS92 4.6 99.7 1.0

S.Zhao, L.Shen, X.Li, Q.Tao, Z.Li, C.Xu, C.Zhou, Y.Yang, M.Sang, G.Han, L.J.Yu, T.Kuang, J.R.Shen, W.Wang. Structural Insights Into Photosystem II Supercomplex and Trimeric Fcp Antennae of A Centric Diatom Cyclotella Meneghiniana. Nat Commun V. 14 8164 2023.
ISSN: ESSN 2041-1723
PubMed: 38071196
DOI: 10.1038/S41467-023-44055-8