Iron in PDB 8j5o: Cryo-Em Structure of Native Rc-Lh Complex From Roseiflexus Castenholzii at 100LUX

The structure of Cryo-Em Structure of Native Rc-Lh Complex From Roseiflexus Castenholzii at 100LUX also contains other interesting chemical elements:

Magnesium

(Mg)

48 atoms

The binding sites of Iron atom in the Cryo-Em Structure of Native Rc-Lh Complex From Roseiflexus Castenholzii at 100LUX (pdb code 8j5o). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 5 binding sites of Iron where determined in the Cryo-Em Structure of Native Rc-Lh Complex From Roseiflexus Castenholzii at 100LUX, PDB code: 8j5o:
Jump to Iron binding site number: 1; 2; 3; 4; 5;

Iron binding site 1 out of 5 in the Cryo-Em Structure of Native Rc-Lh Complex From Roseiflexus Castenholzii at 100LUX


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Cryo-Em Structure of Native Rc-Lh Complex From Roseiflexus Castenholzii at 100LUX within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe501 b:60.9 occ:1.00 FE C:HEM501 0.0 60.9 1.0 NB C:HEM501 2.0 45.8 1.0 ND C:HEM501 2.0 45.6 1.0 NC C:HEM501 2.0 44.4 1.0 NA C:HEM501 2.0 45.8 1.0 NE2 C:HIS122 2.1 52.0 1.0 SD C:MET106 2.2 49.4 1.0 C1B C:HEM501 3.0 46.0 1.0 CD2 C:HIS122 3.0 56.2 1.0 C1D C:HEM501 3.0 44.1 1.0 C4C C:HEM501 3.0 44.3 1.0 C4A C:HEM501 3.0 43.6 1.0 C4B C:HEM501 3.0 43.3 1.0 C1A C:HEM501 3.0 44.2 1.0 C4D C:HEM501 3.0 42.6 1.0 C1C C:HEM501 3.1 42.0 1.0 CE1 C:HIS122 3.1 53.5 1.0 CE C:MET106 3.1 41.8 1.0 CHB C:HEM501 3.4 42.4 1.0 CHD C:HEM501 3.4 45.4 1.0 CHA C:HEM501 3.4 42.2 1.0 CHC C:HEM501 3.4 43.9 1.0 CG C:MET106 3.5 40.0 1.0 CG C:HIS122 4.1 55.8 1.0 ND1 C:HIS122 4.1 49.7 1.0 C2B C:HEM501 4.2 44.9 1.0 C3B C:HEM501 4.2 43.1 1.0 C2D C:HEM501 4.2 44.7 1.0 C3A C:HEM501 4.2 45.4 1.0 C2A C:HEM501 4.3 45.6 1.0 C3C C:HEM501 4.3 43.2 1.0 C3D C:HEM501 4.3 44.3 1.0 C2C C:HEM501 4.3 42.0 1.0 CB C:MET106 4.3 39.4 1.0

Iron binding site 2 out of 5 in the Cryo-Em Structure of Native Rc-Lh Complex From Roseiflexus Castenholzii at 100LUX


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Cryo-Em Structure of Native Rc-Lh Complex From Roseiflexus Castenholzii at 100LUX within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe502 b:50.4 occ:1.00 FE C:HEM502 0.0 50.4 1.0 NC C:HEM502 2.0 30.0 1.0 NB C:HEM502 2.0 30.5 1.0 ND C:HEM502 2.0 30.2 1.0 NA C:HEM502 2.0 29.7 1.0 NE2 C:HIS175 2.1 25.7 1.0 SD C:MET145 2.1 38.5 1.0 CE1 C:HIS175 3.0 23.4 1.0 C4B C:HEM502 3.0 23.8 1.0 C4A C:HEM502 3.0 28.8 1.0 C4D C:HEM502 3.0 29.7 1.0 C1D C:HEM502 3.0 29.4 1.0 C1B C:HEM502 3.0 27.9 1.0 C1A C:HEM502 3.0 28.8 1.0 C4C C:HEM502 3.0 26.0 1.0 C1C C:HEM502 3.0 27.4 1.0 CD2 C:HIS175 3.2 28.2 1.0 CG C:MET145 3.3 30.2 1.0 CE C:MET145 3.3 28.4 1.0 CHC C:HEM502 3.4 26.1 1.0 CHD C:HEM502 3.4 27.9 1.0 CHA C:HEM502 3.4 30.0 1.0 CHB C:HEM502 3.5 26.7 1.0 CB C:MET145 4.2 27.0 1.0 ND1 C:HIS175 4.2 22.8 1.0 C3D C:HEM502 4.3 27.6 1.0 C2D C:HEM502 4.3 26.8 1.0 C3A C:HEM502 4.3 31.9 1.0 C2A C:HEM502 4.3 29.3 1.0 C3B C:HEM502 4.3 28.3 1.0 C2B C:HEM502 4.3 28.4 1.0 C2C C:HEM502 4.3 26.6 1.0 C3C C:HEM502 4.3 28.5 1.0 CG C:HIS175 4.3 23.6 1.0

Iron binding site 3 out of 5 in the Cryo-Em Structure of Native Rc-Lh Complex From Roseiflexus Castenholzii at 100LUX


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Cryo-Em Structure of Native Rc-Lh Complex From Roseiflexus Castenholzii at 100LUX within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe503 b:37.3 occ:1.00 FE C:HEM503 0.0 37.3 1.0 NB C:HEM503 2.0 1.4 1.0 ND C:HEM503 2.0 1.7 1.0 NC C:HEM503 2.0 5.8 1.0 NA C:HEM503 2.0 3.7 1.0 NE2 C:HIS244 2.1 0.0 1.0 SD C:MET229 2.1 8.5 1.0 CD2 C:HIS244 2.8 0.0 1.0 C4B C:HEM503 3.0 0.0 1.0 C4D C:HEM503 3.0 1.8 1.0 C1D C:HEM503 3.0 0.0 1.0 C4C C:HEM503 3.0 0.9 1.0 C1A C:HEM503 3.0 0.8 1.0 C1C C:HEM503 3.0 2.5 1.0 C1B C:HEM503 3.0 0.1 1.0 C4A C:HEM503 3.0 0.2 1.0 CE1 C:HIS244 3.3 0.0 1.0 CE C:MET229 3.3 0.0 1.0 CHC C:HEM503 3.4 0.0 1.0 CHA C:HEM503 3.4 0.0 1.0 CHD C:HEM503 3.4 0.0 1.0 CHB C:HEM503 3.4 0.7 1.0 CG C:MET229 3.5 0.0 1.0 CG C:HIS244 4.0 0.0 1.0 C3D C:HEM503 4.2 1.3 1.0 C2D C:HEM503 4.2 0.7 1.0 C3B C:HEM503 4.2 3.5 1.0 ND1 C:HIS244 4.2 0.0 1.0 C3C C:HEM503 4.2 4.2 1.0 C2C C:HEM503 4.3 1.1 1.0 C2A C:HEM503 4.3 3.9 1.0 C2B C:HEM503 4.3 2.1 1.0 C3A C:HEM503 4.3 1.4 1.0 CB C:MET229 4.4 0.0 1.0

Iron binding site 4 out of 5 in the Cryo-Em Structure of Native Rc-Lh Complex From Roseiflexus Castenholzii at 100LUX


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Cryo-Em Structure of Native Rc-Lh Complex From Roseiflexus Castenholzii at 100LUX within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe504 b:27.3 occ:1.00 FE C:HEM504 0.0 27.3 1.0 NA C:HEM504 2.0 15.0 1.0 ND C:HEM504 2.0 11.9 1.0 NB C:HEM504 2.0 12.0 1.0 NC C:HEM504 2.0 16.1 1.0 NE2 C:HIS297 2.2 4.1 1.0 SD C:MET263 2.2 21.6 1.0 C1C C:HEM504 3.0 12.8 1.0 C4D C:HEM504 3.0 11.0 1.0 C1A C:HEM504 3.0 12.8 1.0 C4B C:HEM504 3.0 7.1 1.0 C1B C:HEM504 3.0 5.9 1.0 C4A C:HEM504 3.0 8.0 1.0 C1D C:HEM504 3.1 11.1 1.0 C4C C:HEM504 3.1 10.0 1.0 CE1 C:HIS297 3.1 6.1 1.0 CG C:MET263 3.1 13.4 1.0 CD2 C:HIS297 3.2 8.4 1.0 CHC C:HEM504 3.4 13.4 1.0 CHA C:HEM504 3.4 13.4 1.0 CHB C:HEM504 3.4 3.4 1.0 CHD C:HEM504 3.4 4.0 1.0 CE C:MET263 3.8 11.8 1.0 CB C:MET263 4.1 9.0 1.0 ND1 C:HIS297 4.2 6.5 1.0 C3D C:HEM504 4.2 11.4 1.0 C2A C:HEM504 4.2 10.3 1.0 C2C C:HEM504 4.2 13.1 1.0 C3B C:HEM504 4.3 4.6 1.0 C3A C:HEM504 4.3 9.4 1.0 C2B C:HEM504 4.3 11.2 1.0 C3C C:HEM504 4.3 10.9 1.0 CG C:HIS297 4.3 8.6 1.0 C2D C:HEM504 4.3 10.5 1.0

Iron binding site 5 out of 5 in the Cryo-Em Structure of Native Rc-Lh Complex From Roseiflexus Castenholzii at 100LUX


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Cryo-Em Structure of Native Rc-Lh Complex From Roseiflexus Castenholzii at 100LUX within 5.0Å range: probe atom residue distance (Å) B Occ L:Fe1004 b:26.6 occ:1.00 OE2 M:GLU557 2.1 26.6 1.0 NE2 L:HIS229 2.4 9.9 1.0 NE2 M:HIS542 2.7 0.0 1.0 CE1 M:HIS589 2.8 3.2 1.0 CD M:GLU557 3.1 26.5 1.0 CE1 L:HIS264 3.1 8.5 1.0 CE1 L:HIS229 3.1 6.6 1.0 CD2 L:HIS229 3.5 0.4 1.0 CD2 M:HIS542 3.5 0.7 1.0 NE2 M:HIS589 3.6 5.5 1.0 CG M:GLU557 3.6 23.9 1.0 ND1 M:HIS589 3.8 2.9 1.0 CE1 M:HIS542 3.8 1.5 1.0 NE2 L:HIS264 4.0 11.7 1.0 ND1 L:HIS264 4.0 12.1 1.0 OE1 M:GLU557 4.1 34.1 1.0 ND1 L:HIS229 4.3 2.9 1.0 CG2 L:VAL233 4.4 5.0 1.0 CG L:HIS229 4.5 6.6 1.0 CG M:HIS542 4.8 3.6 1.0 CB M:GLU557 4.8 28.0 1.0 CD2 M:HIS589 4.8 14.0 1.0 ND1 M:HIS542 4.8 6.1 1.0 CG M:HIS589 4.9 12.4 1.0

X.Xu, J.Xin. Cryo-Em Structure of Carotenoid-Depleted Rc-Lh Complex From Roseiflexus Castenholzii To Be Published.