Iron in PDB 8j5p: Cryo-Em Structure of Native Rc-Lh Complex From Roseiflexus Castenholzii at 2,000LUX

The structure of Cryo-Em Structure of Native Rc-Lh Complex From Roseiflexus Castenholzii at 2,000LUX also contains other interesting chemical elements:

Magnesium

(Mg)

48 atoms

The binding sites of Iron atom in the Cryo-Em Structure of Native Rc-Lh Complex From Roseiflexus Castenholzii at 2,000LUX (pdb code 8j5p). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 5 binding sites of Iron where determined in the Cryo-Em Structure of Native Rc-Lh Complex From Roseiflexus Castenholzii at 2,000LUX, PDB code: 8j5p:
Jump to Iron binding site number: 1; 2; 3; 4; 5;

Iron binding site 1 out of 5 in the Cryo-Em Structure of Native Rc-Lh Complex From Roseiflexus Castenholzii at 2,000LUX


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Cryo-Em Structure of Native Rc-Lh Complex From Roseiflexus Castenholzii at 2,000LUX within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe402 b:77.5 occ:1.00 FE C:HEM402 0.0 77.5 1.0 NA C:HEM402 2.0 57.5 1.0 NC C:HEM402 2.0 53.1 1.0 NB C:HEM402 2.0 60.3 1.0 ND C:HEM402 2.0 59.2 1.0 NE2 C:HIS122 2.2 63.5 1.0 SD C:MET106 2.2 60.2 1.0 CD2 C:HIS122 3.0 61.6 1.0 C1B C:HEM402 3.0 58.4 1.0 C1D C:HEM402 3.0 53.6 1.0 C1A C:HEM402 3.0 55.2 1.0 C4A C:HEM402 3.0 54.4 1.0 C4B C:HEM402 3.0 53.8 1.0 C4D C:HEM402 3.0 58.3 1.0 C4C C:HEM402 3.0 54.0 1.0 C1C C:HEM402 3.0 53.4 1.0 CE C:MET106 3.1 57.5 1.0 CE1 C:HIS122 3.2 64.1 1.0 CHA C:HEM402 3.4 57.6 1.0 CHB C:HEM402 3.4 56.4 1.0 CHD C:HEM402 3.4 53.5 1.0 CHC C:HEM402 3.4 54.6 1.0 CG C:MET106 3.9 50.2 1.0 CG C:HIS122 4.1 64.3 1.0 ND1 C:HIS122 4.2 62.9 1.0 C2B C:HEM402 4.2 54.4 1.0 C2D C:HEM402 4.2 52.6 1.0 C3D C:HEM402 4.2 54.5 1.0 C3B C:HEM402 4.2 52.8 1.0 C2A C:HEM402 4.2 54.4 1.0 C3A C:HEM402 4.2 54.1 1.0 C2C C:HEM402 4.3 53.4 1.0 C3C C:HEM402 4.3 53.0 1.0 CB C:MET106 4.5 48.8 1.0

Iron binding site 2 out of 5 in the Cryo-Em Structure of Native Rc-Lh Complex From Roseiflexus Castenholzii at 2,000LUX


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Cryo-Em Structure of Native Rc-Lh Complex From Roseiflexus Castenholzii at 2,000LUX within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe403 b:68.6 occ:1.00 FE C:HEM403 0.0 68.6 1.0 ND C:HEM403 1.8 42.9 1.0 NA C:HEM403 2.0 44.1 1.0 NE2 C:HIS175 2.0 38.2 1.0 NC C:HEM403 2.1 40.6 1.0 NB C:HEM403 2.4 41.5 1.0 CE1 C:HIS175 2.6 38.5 1.0 C4D C:HEM403 2.7 39.1 1.0 SD C:MET145 2.7 47.0 1.0 C1D C:HEM403 2.8 42.6 1.0 C1A C:HEM403 2.8 39.8 1.0 C4C C:HEM403 3.0 40.4 1.0 C4A C:HEM403 3.1 41.8 1.0 CHA C:HEM403 3.1 38.8 1.0 C1C C:HEM403 3.2 38.1 1.0 CD2 C:HIS175 3.2 39.6 1.0 CHD C:HEM403 3.3 41.9 1.0 C1B C:HEM403 3.3 38.5 1.0 C4B C:HEM403 3.3 41.4 1.0 CG C:MET145 3.6 42.6 1.0 CHB C:HEM403 3.6 38.2 1.0 CHC C:HEM403 3.7 38.4 1.0 CE C:MET145 3.7 51.5 1.0 ND1 C:HIS175 3.9 36.9 1.0 C3D C:HEM403 4.0 41.9 1.0 C2D C:HEM403 4.0 43.5 1.0 C2A C:HEM403 4.1 42.9 1.0 C3A C:HEM403 4.1 40.5 1.0 CG C:HIS175 4.2 36.5 1.0 CB C:MET145 4.2 40.4 1.0 C3C C:HEM403 4.2 41.0 1.0 C2C C:HEM403 4.3 38.3 1.0 C2B C:HEM403 4.5 39.6 1.0 C3B C:HEM403 4.6 40.8 1.0

Iron binding site 3 out of 5 in the Cryo-Em Structure of Native Rc-Lh Complex From Roseiflexus Castenholzii at 2,000LUX


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Cryo-Em Structure of Native Rc-Lh Complex From Roseiflexus Castenholzii at 2,000LUX within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe404 b:55.5 occ:1.00 FE C:HEM404 0.0 55.5 1.0 ND C:HEM404 2.0 34.0 1.0 NA C:HEM404 2.0 35.1 1.0 NC C:HEM404 2.0 29.4 1.0 NB C:HEM404 2.0 30.2 1.0 NE2 C:HIS244 2.1 22.6 1.0 SD C:MET229 2.1 30.0 1.0 CD2 C:HIS244 2.8 16.1 1.0 C4B C:HEM404 3.0 28.5 1.0 C1C C:HEM404 3.0 24.9 1.0 C1A C:HEM404 3.0 26.3 1.0 C4D C:HEM404 3.0 28.4 1.0 C4C C:HEM404 3.0 28.1 1.0 C1D C:HEM404 3.0 29.1 1.0 C1B C:HEM404 3.0 26.5 1.0 C4A C:HEM404 3.0 25.9 1.0 CE C:MET229 3.1 12.0 1.0 CE1 C:HIS244 3.2 19.3 1.0 CHC C:HEM404 3.4 26.2 1.0 CHA C:HEM404 3.4 23.2 1.0 CHD C:HEM404 3.4 31.3 1.0 CHB C:HEM404 3.4 26.4 1.0 CG C:MET229 3.6 18.1 1.0 CG C:HIS244 4.0 7.1 1.0 ND1 C:HIS244 4.2 10.1 1.0 C2C C:HEM404 4.2 24.0 1.0 C3B C:HEM404 4.2 29.4 1.0 C3D C:HEM404 4.2 31.8 1.0 C2A C:HEM404 4.2 26.9 1.0 C3C C:HEM404 4.2 27.2 1.0 C2D C:HEM404 4.2 28.4 1.0 C3A C:HEM404 4.3 23.7 1.0 C2B C:HEM404 4.3 22.2 1.0 CB C:MET229 4.5 18.5 1.0

Iron binding site 4 out of 5 in the Cryo-Em Structure of Native Rc-Lh Complex From Roseiflexus Castenholzii at 2,000LUX


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Cryo-Em Structure of Native Rc-Lh Complex From Roseiflexus Castenholzii at 2,000LUX within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe405 b:46.5 occ:1.00 FE C:HEM405 0.0 46.5 1.0 NB C:HEM405 2.0 21.9 1.0 NC C:HEM405 2.0 22.1 1.0 NA C:HEM405 2.0 23.3 1.0 ND C:HEM405 2.0 19.7 1.0 NE2 C:HIS297 2.2 21.6 1.0 SD C:MET263 2.4 37.4 1.0 CE1 C:HIS297 2.9 15.9 1.0 CG C:MET263 3.0 22.4 1.0 C4B C:HEM405 3.0 20.1 1.0 C1A C:HEM405 3.0 25.8 1.0 C1D C:HEM405 3.0 18.3 1.0 C4A C:HEM405 3.0 16.4 1.0 C4D C:HEM405 3.0 21.9 1.0 C1C C:HEM405 3.0 14.2 1.0 C4C C:HEM405 3.0 24.1 1.0 C1B C:HEM405 3.0 19.5 1.0 CE C:MET263 3.1 17.3 1.0 CHC C:HEM405 3.4 21.8 1.0 CHA C:HEM405 3.4 24.9 1.0 CD2 C:HIS297 3.4 27.3 1.0 CHB C:HEM405 3.4 17.1 1.0 CHD C:HEM405 3.4 20.6 1.0 CB C:MET263 4.0 18.0 1.0 ND1 C:HIS297 4.1 3.9 1.0 C2A C:HEM405 4.2 21.5 1.0 C3A C:HEM405 4.2 18.7 1.0 C2D C:HEM405 4.2 20.8 1.0 C3D C:HEM405 4.2 20.9 1.0 C2B C:HEM405 4.3 16.9 1.0 C3B C:HEM405 4.3 17.1 1.0 C2C C:HEM405 4.3 19.8 1.0 C3C C:HEM405 4.3 22.6 1.0 CG C:HIS297 4.4 15.1 1.0 CE C:MET266 4.8 22.8 1.0 CA C:MET263 4.9 10.3 1.0

Iron binding site 5 out of 5 in the Cryo-Em Structure of Native Rc-Lh Complex From Roseiflexus Castenholzii at 2,000LUX


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Cryo-Em Structure of Native Rc-Lh Complex From Roseiflexus Castenholzii at 2,000LUX within 5.0Å range: probe atom residue distance (Å) B Occ M:Fe702 b:39.9 occ:1.00 OE1 M:GLU557 2.4 40.1 1.0 NE2 L:HIS229 2.4 17.6 1.0 NE2 M:HIS542 2.4 11.4 1.0 NE2 M:HIS589 2.5 9.2 1.0 CD M:GLU557 2.9 35.5 1.0 CE1 M:HIS542 3.1 12.2 1.0 CE1 L:HIS229 3.2 18.8 1.0 CE1 L:HIS264 3.2 11.1 1.0 CD2 M:HIS589 3.5 10.4 1.0 CD2 L:HIS229 3.5 11.6 1.0 CE1 M:HIS589 3.5 8.6 1.0 CD2 M:HIS542 3.6 10.7 1.0 OE2 M:GLU557 3.6 43.0 1.0 CG M:GLU557 3.6 33.9 1.0 NE2 L:HIS264 3.9 12.7 1.0 CG2 L:VAL233 4.2 12.2 1.0 ND1 L:HIS264 4.3 21.4 1.0 ND1 M:HIS542 4.4 10.0 1.0 ND1 L:HIS229 4.4 9.0 1.0 CG L:HIS229 4.6 11.2 1.0 CG M:HIS542 4.6 7.3 1.0 ND1 M:HIS589 4.6 16.5 1.0 CG M:HIS589 4.6 14.9 1.0 CB M:GLU557 4.7 37.4 1.0

X.Xu, J.Xin. Cryo-Em Structure of Carotenoid-Depleted Rc-Lh Complex From Roseiflexus Castenholzii To Be Published.