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Iron in PDB 8j6z: Cryo-Em Structure of the Arabidopsis Thaliana Photosystem I(Psi-Lhcii- ST2)

Enzymatic activity of Cryo-Em Structure of the Arabidopsis Thaliana Photosystem I(Psi-Lhcii- ST2)

All present enzymatic activity of Cryo-Em Structure of the Arabidopsis Thaliana Photosystem I(Psi-Lhcii- ST2):
1.97.1.12;

Other elements in 8j6z:

The structure of Cryo-Em Structure of the Arabidopsis Thaliana Photosystem I(Psi-Lhcii- ST2) also contains other interesting chemical elements:

Magnesium (Mg) 199 atoms

Iron Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Iron atom in the Cryo-Em Structure of the Arabidopsis Thaliana Photosystem I(Psi-Lhcii- ST2) (pdb code 8j6z). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 12 binding sites of Iron where determined in the Cryo-Em Structure of the Arabidopsis Thaliana Photosystem I(Psi-Lhcii- ST2), PDB code: 8j6z:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 12 in 8j6z

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Iron binding site 1 out of 12 in the Cryo-Em Structure of the Arabidopsis Thaliana Photosystem I(Psi-Lhcii- ST2)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Cryo-Em Structure of the Arabidopsis Thaliana Photosystem I(Psi-Lhcii- ST2) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe854

b:22.6
occ:1.00
 FE1 A:SF4854 0.0 22.6 1.0
SG B:CYS559 2.3 20.0 1.0
S4 A:SF4854 2.3 24.1 1.0
S3 A:SF4854 2.3 18.6 1.0
S2 A:SF4854 2.3 13.8 1.0
FE3 A:SF4854 2.7 22.8 1.0
FE2 A:SF4854 2.7 47.8 1.0
FE4 A:SF4854 2.7 26.8 1.0
CB B:CYS559 2.9 2.9 1.0
S1 A:SF4854 3.9 34.0 1.0
SG B:CYS568 4.0 18.3 1.0
CA B:CYS559 4.4 3.9 1.0
CA B:CYS568 4.6 5.2 1.0
SG A:CYS573 4.7 7.3 1.0
CA B:GLY561 4.7 4.4 1.0
N B:GLY561 4.8 4.5 1.0
N B:CYS568 4.8 4.3 1.0
SG A:CYS582 4.8 12.1 1.0
CB B:CYS568 4.9 9.9 1.0
N B:CYS559 4.9 8.2 1.0
C B:GLY561 4.9 9.6 1.0

Iron binding site 2 out of 12 in 8j6z

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Iron binding site 2 out of 12 in the Cryo-Em Structure of the Arabidopsis Thaliana Photosystem I(Psi-Lhcii- ST2)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Cryo-Em Structure of the Arabidopsis Thaliana Photosystem I(Psi-Lhcii- ST2) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe854

b:47.8
occ:1.00
 FE2 A:SF4854 0.0 47.8 1.0
SG B:CYS568 1.8 18.3 1.0
S1 A:SF4854 2.3 34.0 1.0
S3 A:SF4854 2.3 18.6 1.0
S4 A:SF4854 2.3 24.1 1.0
FE1 A:SF4854 2.7 22.6 1.0
FE3 A:SF4854 2.7 22.8 1.0
FE4 A:SF4854 2.7 26.8 1.0
CB B:CYS568 3.2 9.9 1.0
CA B:CYS568 3.8 5.2 1.0
S2 A:SF4854 3.9 13.8 1.0
CZ3 B:TRP667 4.0 3.2 1.0
N B:CYS568 4.2 4.3 1.0
CD1 A:ILE719 4.5 2.4 1.0
SG A:CYS582 4.6 12.1 1.0
CE3 B:TRP667 4.6 1.0 1.0
CB B:CYS559 4.8 2.9 1.0
SG B:CYS559 4.9 20.0 1.0
CH2 B:TRP667 5.0 0.0 1.0
SG A:CYS573 5.0 7.3 1.0

Iron binding site 3 out of 12 in 8j6z

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Iron binding site 3 out of 12 in the Cryo-Em Structure of the Arabidopsis Thaliana Photosystem I(Psi-Lhcii- ST2)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Cryo-Em Structure of the Arabidopsis Thaliana Photosystem I(Psi-Lhcii- ST2) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe854

b:22.8
occ:1.00
 FE3 A:SF4854 0.0 22.8 1.0
S4 A:SF4854 2.3 24.1 1.0
S1 A:SF4854 2.3 34.0 1.0
S2 A:SF4854 2.3 13.8 1.0
SG A:CYS573 2.3 7.3 1.0
FE1 A:SF4854 2.7 22.6 1.0
FE2 A:SF4854 2.7 47.8 1.0
FE4 A:SF4854 2.7 26.8 1.0
CB A:CYS573 3.3 0.0 1.0
S3 A:SF4854 3.9 18.6 1.0
SG B:CYS568 4.1 18.3 1.0
CD1 A:ILE719 4.5 2.4 1.0
SG B:CYS559 4.7 20.0 1.0
SG A:CYS582 4.7 12.1 1.0
CA A:CYS573 4.7 0.2 1.0
N B:PRO562 4.8 9.9 1.0
CD B:PRO562 4.8 9.3 1.0
CB B:PRO562 4.8 3.8 1.0
C B:GLY561 4.9 9.6 1.0
CA B:PRO562 5.0 6.2 1.0

Iron binding site 4 out of 12 in 8j6z

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Iron binding site 4 out of 12 in the Cryo-Em Structure of the Arabidopsis Thaliana Photosystem I(Psi-Lhcii- ST2)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Cryo-Em Structure of the Arabidopsis Thaliana Photosystem I(Psi-Lhcii- ST2) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe854

b:26.8
occ:1.00
 FE4 A:SF4854 0.0 26.8 1.0
SG A:CYS582 2.2 12.1 1.0
S2 A:SF4854 2.3 13.8 1.0
S3 A:SF4854 2.3 18.6 1.0
S1 A:SF4854 2.3 34.0 1.0
FE1 A:SF4854 2.7 22.6 1.0
FE2 A:SF4854 2.7 47.8 1.0
FE3 A:SF4854 2.7 22.8 1.0
CB A:CYS582 3.6 8.6 1.0
S4 A:SF4854 3.9 24.1 1.0
CA A:CYS582 4.0 4.1 1.0
N A:CYS582 4.3 8.0 1.0
CB A:CYS573 4.4 0.0 1.0
SG A:CYS573 4.4 7.3 1.0
CD1 B:ILE702 4.5 0.0 1.0
SG B:CYS568 4.5 18.3 1.0
SG B:CYS559 4.6 20.0 1.0
CE3 B:TRP667 4.6 1.0 1.0
CZ3 B:TRP667 4.8 3.2 1.0

Iron binding site 5 out of 12 in 8j6z

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Iron binding site 5 out of 12 in the Cryo-Em Structure of the Arabidopsis Thaliana Photosystem I(Psi-Lhcii- ST2)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Cryo-Em Structure of the Arabidopsis Thaliana Photosystem I(Psi-Lhcii- ST2) within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe101

b:8.5
occ:1.00
 FE1 C:SF4101 0.0 8.5 1.0
S2 C:SF4101 2.3 7.6 1.0
S3 C:SF4101 2.3 0.0 1.0
S4 C:SF4101 2.3 9.6 1.0
SG C:CYS54 2.3 0.0 1.0
FE2 C:SF4101 2.7 10.7 1.0
FE3 C:SF4101 2.7 13.6 1.0
FE4 C:SF4101 2.7 15.5 1.0
CB C:CYS54 3.3 4.1 1.0
S1 C:SF4101 3.9 7.1 1.0
CG2 C:VAL67 4.1 5.4 1.0
SG C:CYS21 4.2 12.2 1.0
N C:CYS54 4.2 6.1 1.0
CA C:CYS54 4.4 3.5 1.0
SG C:CYS51 4.6 8.4 1.0
CD1 C:LEU26 4.7 0.5 1.0
N C:LYS52 4.7 0.3 1.0
CA C:LYS52 4.8 0.0 1.0
SG C:CYS48 4.8 9.7 1.0
N C:ARG53 4.9 1.9 1.0

Iron binding site 6 out of 12 in 8j6z

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Iron binding site 6 out of 12 in the Cryo-Em Structure of the Arabidopsis Thaliana Photosystem I(Psi-Lhcii- ST2)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Cryo-Em Structure of the Arabidopsis Thaliana Photosystem I(Psi-Lhcii- ST2) within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe101

b:10.7
occ:1.00
 FE2 C:SF4101 0.0 10.7 1.0
SG C:CYS48 2.3 9.7 1.0
S3 C:SF4101 2.3 0.0 1.0
S1 C:SF4101 2.3 7.1 1.0
S4 C:SF4101 2.3 9.6 1.0
FE4 C:SF4101 2.7 15.5 1.0
FE3 C:SF4101 2.7 13.6 1.0
FE1 C:SF4101 2.7 8.5 1.0
CB C:CYS48 3.6 4.8 1.0
S2 C:SF4101 3.9 7.6 1.0
CA C:CYS48 4.0 3.5 1.0
N C:GLY50 4.1 6.0 1.0
N C:VAL49 4.3 5.3 1.0
SG C:CYS21 4.3 12.2 1.0
C C:CYS48 4.5 8.8 1.0
CA C:GLY50 4.6 0.0 1.0
SG C:CYS51 4.6 8.4 1.0
CG2 C:VAL5 4.6 2.0 1.0
CG2 C:VAL25 4.8 0.0 1.0
N C:CYS51 4.8 4.2 1.0
CG2 C:VAL67 4.9 5.4 1.0
CG1 C:VAL25 4.9 1.3 1.0
SG C:CYS54 4.9 0.0 1.0
CB C:VAL25 5.0 0.0 1.0

Iron binding site 7 out of 12 in 8j6z

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Iron binding site 7 out of 12 in the Cryo-Em Structure of the Arabidopsis Thaliana Photosystem I(Psi-Lhcii- ST2)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Cryo-Em Structure of the Arabidopsis Thaliana Photosystem I(Psi-Lhcii- ST2) within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe101

b:13.6
occ:1.00
 FE3 C:SF4101 0.0 13.6 1.0
SG C:CYS51 2.0 8.4 1.0
S4 C:SF4101 2.3 9.6 1.0
S1 C:SF4101 2.3 7.1 1.0
S2 C:SF4101 2.3 7.6 1.0
FE2 C:SF4101 2.7 10.7 1.0
FE1 C:SF4101 2.7 8.5 1.0
FE4 C:SF4101 2.7 15.5 1.0
N C:LYS52 3.5 0.3 1.0
N C:CYS51 3.5 4.2 1.0
CB C:CYS51 3.6 4.0 1.0
S3 C:SF4101 3.9 0.0 1.0
CA C:CYS51 3.9 3.7 1.0
C C:CYS51 4.1 3.0 1.0
N C:ARG53 4.1 1.9 1.0
CD C:PRO22 4.2 5.3 1.0
CA C:LYS52 4.3 0.0 1.0
SG C:CYS21 4.4 12.2 1.0
C C:GLY50 4.4 0.4 1.0
SG C:CYS54 4.4 0.0 1.0
N C:GLY50 4.5 6.0 1.0
CG C:PRO22 4.6 2.8 1.0
C C:LYS52 4.7 0.9 1.0
SG C:CYS48 4.7 9.7 1.0
CA C:GLY50 4.7 0.0 1.0
CG2 C:VAL49 4.8 5.5 1.0
CB C:ARG53 4.9 0.5 1.0
N C:CYS54 4.9 6.1 1.0
CA C:ARG53 5.0 0.0 1.0

Iron binding site 8 out of 12 in 8j6z

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Iron binding site 8 out of 12 in the Cryo-Em Structure of the Arabidopsis Thaliana Photosystem I(Psi-Lhcii- ST2)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Cryo-Em Structure of the Arabidopsis Thaliana Photosystem I(Psi-Lhcii- ST2) within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe101

b:15.5
occ:1.00
 FE4 C:SF4101 0.0 15.5 1.0
SG C:CYS21 1.8 12.2 1.0
S1 C:SF4101 2.3 7.1 1.0
S3 C:SF4101 2.3 0.0 1.0
S2 C:SF4101 2.3 7.6 1.0
FE2 C:SF4101 2.7 10.7 1.0
FE3 C:SF4101 2.7 13.6 1.0
FE1 C:SF4101 2.7 8.5 1.0
CB C:CYS21 3.2 8.0 1.0
CA C:CYS21 3.7 3.7 1.0
CD C:PRO22 3.8 5.3 1.0
S4 C:SF4101 3.9 9.6 1.0
SG C:CYS51 4.3 8.4 1.0
N C:PRO22 4.4 3.9 1.0
CB C:VAL25 4.4 0.0 1.0
C C:CYS21 4.4 7.2 1.0
O C:THR23 4.5 20.9 1.0
CG2 C:VAL25 4.5 0.0 1.0
OG1 C:THR23 4.7 9.7 1.0
CG C:PRO22 4.8 2.8 1.0
SG C:CYS54 4.8 0.0 1.0
SG C:CYS48 4.8 9.7 1.0
N C:CYS21 4.9 0.0 1.0

Iron binding site 9 out of 12 in 8j6z

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Iron binding site 9 out of 12 in the Cryo-Em Structure of the Arabidopsis Thaliana Photosystem I(Psi-Lhcii- ST2)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Cryo-Em Structure of the Arabidopsis Thaliana Photosystem I(Psi-Lhcii- ST2) within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe102

b:10.3
occ:1.00
 FE1 C:SF4102 0.0 10.3 1.0
S3 C:SF4102 2.3 0.0 1.0
S2 C:SF4102 2.3 0.0 1.0
S4 C:SF4102 2.3 18.1 1.0
SG C:CYS58 2.4 9.1 1.0
FE2 C:SF4102 2.7 20.3 1.0
FE4 C:SF4102 2.7 5.3 1.0
FE3 C:SF4102 2.7 25.1 1.0
CB C:CYS58 3.5 2.8 1.0
S1 C:SF4102 3.9 17.2 1.0
CA C:CYS58 3.9 1.0 1.0
SG C:CYS14 4.2 6.4 1.0
CB C:SER64 4.2 1.6 1.0
CD C:PRO59 4.3 3.3 1.0
SG C:CYS17 4.4 15.3 1.0
CG1 C:VAL65 4.4 0.0 1.0
SG C:CYS11 4.6 23.0 1.0
CB C:CYS17 4.7 4.3 1.0
OG1 C:THR60 4.7 4.2 1.0
N C:VAL65 4.8 4.7 1.0
C C:CYS58 4.8 4.8 1.0
OG C:SER64 4.8 7.2 1.0
N C:SER64 4.8 6.2 1.0
N C:PRO59 4.9 2.7 1.0
CA C:SER64 4.9 1.5 1.0
C C:SER64 4.9 2.8 1.0
N C:CYS58 5.0 4.7 1.0

Iron binding site 10 out of 12 in 8j6z

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Iron binding site 10 out of 12 in the Cryo-Em Structure of the Arabidopsis Thaliana Photosystem I(Psi-Lhcii- ST2)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Cryo-Em Structure of the Arabidopsis Thaliana Photosystem I(Psi-Lhcii- ST2) within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe102

b:20.3
occ:1.00
 FE2 C:SF4102 0.0 20.3 1.0
SG C:CYS17 2.0 15.3 1.0
S4 C:SF4102 2.3 18.1 1.0
S1 C:SF4102 2.3 17.2 1.0
S3 C:SF4102 2.3 0.0 1.0
FE1 C:SF4102 2.7 10.3 1.0
FE3 C:SF4102 2.7 25.1 1.0
FE4 C:SF4102 2.7 5.3 1.0
CB C:CYS17 3.2 4.3 1.0
S2 C:SF4102 3.9 0.0 1.0
N C:CYS17 3.9 6.4 1.0
SG C:CYS14 3.9 6.4 1.0
CA C:CYS17 4.2 3.7 1.0
CB C:ALA40 4.3 1.1 1.0
SG C:CYS11 4.4 23.0 1.0
N C:GLN16 4.6 8.6 1.0
N C:THR15 4.8 7.0 1.0
C C:THR15 4.8 5.2 1.0
CA C:THR15 5.0 5.5 1.0

Reference:

S.J.B.Chen, J.H.Wu. Cryo-Em Structure of the Arabidopsis Thaliana Photosystem I(Psi-Lhcii-ST2) To Be Published.
Page generated: Sat Aug 10 06:32:43 2024

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