Atomistry » Iron » PDB 8ire-8jfw » 8j7a
Atomistry »
  Iron »
    PDB 8ire-8jfw »
      8j7a »

Iron in PDB 8j7a: Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 1 (Psi-ST1)

Enzymatic activity of Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 1 (Psi-ST1)

All present enzymatic activity of Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 1 (Psi-ST1):
1.97.1.12;

Other elements in 8j7a:

The structure of Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 1 (Psi-ST1) also contains other interesting chemical elements:

Magnesium (Mg) 151 atoms

Iron Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Iron atom in the Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 1 (Psi-ST1) (pdb code 8j7a). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 12 binding sites of Iron where determined in the Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 1 (Psi-ST1), PDB code: 8j7a:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 12 in 8j7a

Go back to Iron Binding Sites List in 8j7a
Iron binding site 1 out of 12 in the Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 1 (Psi-ST1)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 1 (Psi-ST1) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe854

b:56.1
occ:1.00
 FE1 A:SF4854 0.0 56.1 1.0
S2 A:SF4854 2.3 51.4 1.0
S3 A:SF4854 2.3 69.6 1.0
S4 A:SF4854 2.3 73.7 1.0
FE4 A:SF4854 2.7 73.1 1.0
FE2 A:SF4854 2.7 86.5 1.0
FE3 A:SF4854 2.7 62.6 1.0
SG B:CYS559 2.9 49.9 1.0
CB B:CYS559 3.2 29.1 1.0
S1 A:SF4854 3.9 78.1 1.0
CA B:CYS559 4.7 29.3 1.0
CD1 B:ILE702 4.7 23.7 1.0
SG A:CYS582 4.7 47.9 1.0

Iron binding site 2 out of 12 in 8j7a

Go back to Iron Binding Sites List in 8j7a
Iron binding site 2 out of 12 in the Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 1 (Psi-ST1)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 1 (Psi-ST1) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe854

b:86.5
occ:1.00
 FE2 A:SF4854 0.0 86.5 1.0
S4 A:SF4854 2.3 73.7 1.0
S3 A:SF4854 2.3 69.6 1.0
S1 A:SF4854 2.3 78.1 1.0
FE4 A:SF4854 2.7 73.1 1.0
FE1 A:SF4854 2.7 56.1 1.0
FE3 A:SF4854 2.7 62.6 1.0
SG B:CYS568 2.9 36.4 1.0
CB B:CYS568 3.5 28.3 1.0
CA B:CYS568 3.9 30.1 1.0
S2 A:SF4854 3.9 51.4 1.0
CZ3 B:TRP667 4.2 25.6 1.0
N B:CYS568 4.3 32.0 1.0
CD1 A:ILE719 4.6 29.5 1.0
CB B:CYS559 4.8 29.1 1.0
CH2 B:TRP667 4.8 14.0 1.0
CE3 B:TRP667 5.0 27.7 1.0

Iron binding site 3 out of 12 in 8j7a

Go back to Iron Binding Sites List in 8j7a
Iron binding site 3 out of 12 in the Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 1 (Psi-ST1)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 1 (Psi-ST1) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe854

b:62.6
occ:1.00
 FE3 A:SF4854 0.0 62.6 1.0
S4 A:SF4854 2.3 73.7 1.0
S1 A:SF4854 2.3 78.1 1.0
S2 A:SF4854 2.3 51.4 1.0
FE2 A:SF4854 2.7 86.5 1.0
FE4 A:SF4854 2.7 73.1 1.0
FE1 A:SF4854 2.7 56.1 1.0
SG A:CYS573 2.9 32.9 1.0
CB A:CYS573 3.7 20.4 1.0
S3 A:SF4854 3.9 69.6 1.0
CD1 A:ILE719 4.4 29.5 1.0
N B:PRO562 4.6 34.6 1.0
CB B:PRO562 4.6 23.7 1.0
C B:GLY561 4.6 36.5 1.0
O B:GLY561 4.7 36.7 1.0
CA B:PRO562 4.7 29.6 1.0
SG B:CYS559 4.7 49.9 1.0
SG B:CYS568 4.9 36.4 1.0
CD B:PRO562 5.0 32.2 1.0

Iron binding site 4 out of 12 in 8j7a

Go back to Iron Binding Sites List in 8j7a
Iron binding site 4 out of 12 in the Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 1 (Psi-ST1)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 1 (Psi-ST1) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe854

b:73.1
occ:1.00
 FE4 A:SF4854 0.0 73.1 1.0
S2 A:SF4854 2.3 51.4 1.0
S1 A:SF4854 2.3 78.1 1.0
S3 A:SF4854 2.3 69.6 1.0
FE1 A:SF4854 2.7 56.1 1.0
FE2 A:SF4854 2.7 86.5 1.0
FE3 A:SF4854 2.7 62.6 1.0
SG A:CYS582 2.9 47.9 1.0
CB A:CYS582 3.4 36.5 1.0
S4 A:SF4854 3.9 73.7 1.0
CA A:CYS582 3.9 28.0 1.0
CB A:CYS573 4.2 20.4 1.0
CE3 B:TRP667 4.3 27.7 1.0
CZ3 B:TRP667 4.4 25.6 1.0
N A:CYS582 4.5 29.0 1.0
SG A:CYS573 4.5 32.9 1.0

Iron binding site 5 out of 12 in 8j7a

Go back to Iron Binding Sites List in 8j7a
Iron binding site 5 out of 12 in the Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 1 (Psi-ST1)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 1 (Psi-ST1) within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe102

b:66.1
occ:1.00
 FE1 C:SF4102 0.0 66.1 1.0
S4 C:SF4102 2.3 67.4 1.0
S2 C:SF4102 2.3 44.5 1.0
S3 C:SF4102 2.3 64.1 1.0
FE3 C:SF4102 2.7 53.9 1.0
FE4 C:SF4102 2.7 48.9 1.0
FE2 C:SF4102 2.7 63.2 1.0
SG C:CYS58 3.0 44.4 1.0
CB C:CYS58 3.4 34.7 1.0
CA C:CYS58 3.6 37.2 1.0
S1 C:SF4102 3.9 63.8 1.0
CD C:PRO59 4.2 36.6 1.0
CG1 C:VAL65 4.3 18.8 1.0
N C:CYS58 4.5 41.4 1.0
CB C:SER64 4.6 27.6 1.0
CB C:CYS17 4.6 28.9 1.0
C C:CYS58 4.7 41.3 1.0
N C:PRO59 4.8 35.4 1.0
SG C:CYS14 5.0 39.1 1.0

Iron binding site 6 out of 12 in 8j7a

Go back to Iron Binding Sites List in 8j7a
Iron binding site 6 out of 12 in the Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 1 (Psi-ST1)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 1 (Psi-ST1) within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe102

b:63.2
occ:1.00
 FE2 C:SF4102 0.0 63.2 1.0
S1 C:SF4102 2.3 63.8 1.0
S3 C:SF4102 2.3 64.1 1.0
S4 C:SF4102 2.3 67.4 1.0
FE3 C:SF4102 2.7 53.9 1.0
FE4 C:SF4102 2.7 48.9 1.0
FE1 C:SF4102 2.7 66.1 1.0
SG C:CYS17 3.0 57.3 1.0
CB C:CYS17 3.2 28.9 1.0
N C:CYS17 3.7 29.4 1.0
S2 C:SF4102 3.9 44.5 1.0
CA C:CYS17 4.1 26.1 1.0
N C:GLN16 4.4 41.4 1.0
CB C:ALA40 4.5 30.0 1.0
N C:THR15 4.7 38.5 1.0
C C:GLN16 4.8 40.6 1.0
N C:VAL18 4.9 31.4 1.0
CA C:THR15 4.9 30.5 1.0
C C:THR15 4.9 32.6 1.0
C C:CYS17 5.0 31.1 1.0

Iron binding site 7 out of 12 in 8j7a

Go back to Iron Binding Sites List in 8j7a
Iron binding site 7 out of 12 in the Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 1 (Psi-ST1)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 1 (Psi-ST1) within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe102

b:53.9
occ:1.00
 FE3 C:SF4102 0.0 53.9 1.0
S1 C:SF4102 2.3 63.8 1.0
S2 C:SF4102 2.3 44.5 1.0
S4 C:SF4102 2.3 67.4 1.0
FE4 C:SF4102 2.7 48.9 1.0
FE1 C:SF4102 2.7 66.1 1.0
FE2 C:SF4102 2.7 63.2 1.0
SG C:CYS14 2.9 39.1 1.0
N C:CYS14 3.5 31.5 1.0
S3 C:SF4102 3.9 64.1 1.0
CB C:CYS14 4.0 34.8 1.0
N C:THR15 4.1 38.5 1.0
CA C:CYS14 4.2 28.6 1.0
N C:GLY13 4.3 34.2 1.0
CD C:PRO59 4.3 36.6 1.0
C C:CYS14 4.4 39.0 1.0
C C:GLY13 4.5 37.2 1.0
CG1 C:ILE12 4.5 35.1 1.0
CA C:GLY13 4.6 28.3 1.0
SG C:CYS11 4.6 46.3 1.0
N C:GLN16 4.6 41.4 1.0
N C:ILE12 4.8 29.2 1.0

Iron binding site 8 out of 12 in 8j7a

Go back to Iron Binding Sites List in 8j7a
Iron binding site 8 out of 12 in the Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 1 (Psi-ST1)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 1 (Psi-ST1) within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe102

b:48.9
occ:1.00
 FE4 C:SF4102 0.0 48.9 1.0
S3 C:SF4102 2.3 64.1 1.0
S2 C:SF4102 2.3 44.5 1.0
S1 C:SF4102 2.3 63.8 1.0
FE3 C:SF4102 2.7 53.9 1.0
FE1 C:SF4102 2.7 66.1 1.0
FE2 C:SF4102 2.7 63.2 1.0
SG C:CYS11 2.9 46.3 1.0
CB C:CYS11 3.6 32.1 1.0
S4 C:SF4102 3.9 67.4 1.0
CA C:CYS11 4.0 30.1 1.0
CB C:SER64 4.3 27.6 1.0
N C:ILE12 4.5 29.2 1.0
CB C:ALA40 4.6 30.0 1.0
N C:GLY13 4.6 34.2 1.0
C C:CYS11 4.8 33.8 1.0

Iron binding site 9 out of 12 in 8j7a

Go back to Iron Binding Sites List in 8j7a
Iron binding site 9 out of 12 in the Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 1 (Psi-ST1)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 1 (Psi-ST1) within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe101

b:36.5
occ:1.00
 FE1 C:SF4101 0.0 36.5 1.0
S3 C:SF4101 2.3 48.3 1.0
S4 C:SF4101 2.3 44.2 1.0
S2 C:SF4101 2.3 48.4 1.0
FE2 C:SF4101 2.7 48.1 1.0
FE3 C:SF4101 2.7 33.3 1.0
FE4 C:SF4101 2.7 46.1 1.0
SG C:CYS54 3.0 39.9 1.0
CB C:CYS54 3.2 23.0 1.0
S1 C:SF4101 3.9 39.6 1.0
N C:CYS54 4.0 26.7 1.0
CG2 C:VAL67 4.2 23.1 1.0
CA C:CYS54 4.3 23.6 1.0
CD1 C:LEU26 4.6 25.3 1.0
CA C:LYS52 4.8 19.5 1.0
N C:LYS52 4.8 27.3 1.0
N C:ARG53 4.8 29.4 1.0

Iron binding site 10 out of 12 in 8j7a

Go back to Iron Binding Sites List in 8j7a
Iron binding site 10 out of 12 in the Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 1 (Psi-ST1)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 1 (Psi-ST1) within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe101

b:48.1
occ:1.00
 FE2 C:SF4101 0.0 48.1 1.0
S3 C:SF4101 2.3 48.3 1.0
S1 C:SF4101 2.3 39.6 1.0
S4 C:SF4101 2.3 44.2 1.0
FE4 C:SF4101 2.7 46.1 1.0
FE1 C:SF4101 2.7 36.5 1.0
FE3 C:SF4101 2.7 33.3 1.0
SG C:CYS48 3.0 35.2 1.0
CB C:CYS48 3.4 30.0 1.0
CA C:CYS48 3.8 28.4 1.0
S2 C:SF4101 3.9 48.4 1.0
N C:VAL49 4.2 24.8 1.0
N C:GLY50 4.2 32.2 1.0
C C:CYS48 4.5 31.2 1.0
CG2 C:VAL5 4.7 20.3 1.0
CG2 C:VAL25 4.7 35.0 1.0
CA C:GLY50 4.8 23.8 1.0
CG1 C:VAL25 4.8 33.6 1.0
CB C:VAL25 4.8 26.2 1.0

Reference:

S.J.B.Chen, J.H.Wu. Cryo-Em Structure of the Arabidopsis Thaliana Photosystem I(Psi-Lhcii-ST2) To Be Published.
Page generated: Sat Aug 10 06:34:48 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy