Iron in PDB 8j7a: Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 1 (Psi-ST1)

Enzymatic activity of Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 1 (Psi-ST1)

Other elements in 8j7a:

Iron Binding Sites:

Iron binding site 1 out of 12 in 8j7a

Iron Binding Sites List in 8j7a

Iron binding site 1 out of 12 in the Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 1 (Psi-ST1)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 1 (Psi-ST1) within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe854 b:56.1 occ:1.00 FE1 A:SF4854 0.0 56.1 1.0 S2 A:SF4854 2.3 51.4 1.0 S3 A:SF4854 2.3 69.6 1.0 S4 A:SF4854 2.3 73.7 1.0 FE4 A:SF4854 2.7 73.1 1.0 FE2 A:SF4854 2.7 86.5 1.0 FE3 A:SF4854 2.7 62.6 1.0 SG B:CYS559 2.9 49.9 1.0 CB B:CYS559 3.2 29.1 1.0 S1 A:SF4854 3.9 78.1 1.0 CA B:CYS559 4.7 29.3 1.0 CD1 B:ILE702 4.7 23.7 1.0 SG A:CYS582 4.7 47.9 1.0

Iron binding site 2 out of 12 in 8j7a

Iron Binding Sites List in 8j7a

Iron binding site 2 out of 12 in the Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 1 (Psi-ST1)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 1 (Psi-ST1) within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe854 b:86.5 occ:1.00 FE2 A:SF4854 0.0 86.5 1.0 S4 A:SF4854 2.3 73.7 1.0 S3 A:SF4854 2.3 69.6 1.0 S1 A:SF4854 2.3 78.1 1.0 FE4 A:SF4854 2.7 73.1 1.0 FE1 A:SF4854 2.7 56.1 1.0 FE3 A:SF4854 2.7 62.6 1.0 SG B:CYS568 2.9 36.4 1.0 CB B:CYS568 3.5 28.3 1.0 CA B:CYS568 3.9 30.1 1.0 S2 A:SF4854 3.9 51.4 1.0 CZ3 B:TRP667 4.2 25.6 1.0 N B:CYS568 4.3 32.0 1.0 CD1 A:ILE719 4.6 29.5 1.0 CB B:CYS559 4.8 29.1 1.0 CH2 B:TRP667 4.8 14.0 1.0 CE3 B:TRP667 5.0 27.7 1.0

Iron binding site 3 out of 12 in 8j7a

Iron Binding Sites List in 8j7a

Iron binding site 3 out of 12 in the Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 1 (Psi-ST1)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 1 (Psi-ST1) within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe854 b:62.6 occ:1.00 FE3 A:SF4854 0.0 62.6 1.0 S4 A:SF4854 2.3 73.7 1.0 S1 A:SF4854 2.3 78.1 1.0 S2 A:SF4854 2.3 51.4 1.0 FE2 A:SF4854 2.7 86.5 1.0 FE4 A:SF4854 2.7 73.1 1.0 FE1 A:SF4854 2.7 56.1 1.0 SG A:CYS573 2.9 32.9 1.0 CB A:CYS573 3.7 20.4 1.0 S3 A:SF4854 3.9 69.6 1.0 CD1 A:ILE719 4.4 29.5 1.0 N B:PRO562 4.6 34.6 1.0 CB B:PRO562 4.6 23.7 1.0 C B:GLY561 4.6 36.5 1.0 O B:GLY561 4.7 36.7 1.0 CA B:PRO562 4.7 29.6 1.0 SG B:CYS559 4.7 49.9 1.0 SG B:CYS568 4.9 36.4 1.0 CD B:PRO562 5.0 32.2 1.0

Iron binding site 4 out of 12 in 8j7a

Iron Binding Sites List in 8j7a

Iron binding site 4 out of 12 in the Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 1 (Psi-ST1)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 1 (Psi-ST1) within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe854 b:73.1 occ:1.00 FE4 A:SF4854 0.0 73.1 1.0 S2 A:SF4854 2.3 51.4 1.0 S1 A:SF4854 2.3 78.1 1.0 S3 A:SF4854 2.3 69.6 1.0 FE1 A:SF4854 2.7 56.1 1.0 FE2 A:SF4854 2.7 86.5 1.0 FE3 A:SF4854 2.7 62.6 1.0 SG A:CYS582 2.9 47.9 1.0 CB A:CYS582 3.4 36.5 1.0 S4 A:SF4854 3.9 73.7 1.0 CA A:CYS582 3.9 28.0 1.0 CB A:CYS573 4.2 20.4 1.0 CE3 B:TRP667 4.3 27.7 1.0 CZ3 B:TRP667 4.4 25.6 1.0 N A:CYS582 4.5 29.0 1.0 SG A:CYS573 4.5 32.9 1.0

Iron binding site 5 out of 12 in 8j7a

Iron Binding Sites List in 8j7a

Iron binding site 5 out of 12 in the Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 1 (Psi-ST1)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 1 (Psi-ST1) within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe102 b:66.1 occ:1.00 FE1 C:SF4102 0.0 66.1 1.0 S4 C:SF4102 2.3 67.4 1.0 S2 C:SF4102 2.3 44.5 1.0 S3 C:SF4102 2.3 64.1 1.0 FE3 C:SF4102 2.7 53.9 1.0 FE4 C:SF4102 2.7 48.9 1.0 FE2 C:SF4102 2.7 63.2 1.0 SG C:CYS58 3.0 44.4 1.0 CB C:CYS58 3.4 34.7 1.0 CA C:CYS58 3.6 37.2 1.0 S1 C:SF4102 3.9 63.8 1.0 CD C:PRO59 4.2 36.6 1.0 CG1 C:VAL65 4.3 18.8 1.0 N C:CYS58 4.5 41.4 1.0 CB C:SER64 4.6 27.6 1.0 CB C:CYS17 4.6 28.9 1.0 C C:CYS58 4.7 41.3 1.0 N C:PRO59 4.8 35.4 1.0 SG C:CYS14 5.0 39.1 1.0

Iron binding site 6 out of 12 in 8j7a

Iron Binding Sites List in 8j7a

Iron binding site 6 out of 12 in the Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 1 (Psi-ST1)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 1 (Psi-ST1) within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe102 b:63.2 occ:1.00 FE2 C:SF4102 0.0 63.2 1.0 S1 C:SF4102 2.3 63.8 1.0 S3 C:SF4102 2.3 64.1 1.0 S4 C:SF4102 2.3 67.4 1.0 FE3 C:SF4102 2.7 53.9 1.0 FE4 C:SF4102 2.7 48.9 1.0 FE1 C:SF4102 2.7 66.1 1.0 SG C:CYS17 3.0 57.3 1.0 CB C:CYS17 3.2 28.9 1.0 N C:CYS17 3.7 29.4 1.0 S2 C:SF4102 3.9 44.5 1.0 CA C:CYS17 4.1 26.1 1.0 N C:GLN16 4.4 41.4 1.0 CB C:ALA40 4.5 30.0 1.0 N C:THR15 4.7 38.5 1.0 C C:GLN16 4.8 40.6 1.0 N C:VAL18 4.9 31.4 1.0 CA C:THR15 4.9 30.5 1.0 C C:THR15 4.9 32.6 1.0 C C:CYS17 5.0 31.1 1.0

Iron binding site 7 out of 12 in 8j7a

Iron Binding Sites List in 8j7a

Iron binding site 7 out of 12 in the Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 1 (Psi-ST1)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 1 (Psi-ST1) within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe102 b:53.9 occ:1.00 FE3 C:SF4102 0.0 53.9 1.0 S1 C:SF4102 2.3 63.8 1.0 S2 C:SF4102 2.3 44.5 1.0 S4 C:SF4102 2.3 67.4 1.0 FE4 C:SF4102 2.7 48.9 1.0 FE1 C:SF4102 2.7 66.1 1.0 FE2 C:SF4102 2.7 63.2 1.0 SG C:CYS14 2.9 39.1 1.0 N C:CYS14 3.5 31.5 1.0 S3 C:SF4102 3.9 64.1 1.0 CB C:CYS14 4.0 34.8 1.0 N C:THR15 4.1 38.5 1.0 CA C:CYS14 4.2 28.6 1.0 N C:GLY13 4.3 34.2 1.0 CD C:PRO59 4.3 36.6 1.0 C C:CYS14 4.4 39.0 1.0 C C:GLY13 4.5 37.2 1.0 CG1 C:ILE12 4.5 35.1 1.0 CA C:GLY13 4.6 28.3 1.0 SG C:CYS11 4.6 46.3 1.0 N C:GLN16 4.6 41.4 1.0 N C:ILE12 4.8 29.2 1.0

Iron binding site 8 out of 12 in 8j7a

Iron Binding Sites List in 8j7a

Iron binding site 8 out of 12 in the Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 1 (Psi-ST1)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 1 (Psi-ST1) within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe102 b:48.9 occ:1.00 FE4 C:SF4102 0.0 48.9 1.0 S3 C:SF4102 2.3 64.1 1.0 S2 C:SF4102 2.3 44.5 1.0 S1 C:SF4102 2.3 63.8 1.0 FE3 C:SF4102 2.7 53.9 1.0 FE1 C:SF4102 2.7 66.1 1.0 FE2 C:SF4102 2.7 63.2 1.0 SG C:CYS11 2.9 46.3 1.0 CB C:CYS11 3.6 32.1 1.0 S4 C:SF4102 3.9 67.4 1.0 CA C:CYS11 4.0 30.1 1.0 CB C:SER64 4.3 27.6 1.0 N C:ILE12 4.5 29.2 1.0 CB C:ALA40 4.6 30.0 1.0 N C:GLY13 4.6 34.2 1.0 C C:CYS11 4.8 33.8 1.0

Iron binding site 9 out of 12 in 8j7a

Iron Binding Sites List in 8j7a

Iron binding site 9 out of 12 in the Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 1 (Psi-ST1)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 1 (Psi-ST1) within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe101 b:36.5 occ:1.00 FE1 C:SF4101 0.0 36.5 1.0 S3 C:SF4101 2.3 48.3 1.0 S4 C:SF4101 2.3 44.2 1.0 S2 C:SF4101 2.3 48.4 1.0 FE2 C:SF4101 2.7 48.1 1.0 FE3 C:SF4101 2.7 33.3 1.0 FE4 C:SF4101 2.7 46.1 1.0 SG C:CYS54 3.0 39.9 1.0 CB C:CYS54 3.2 23.0 1.0 S1 C:SF4101 3.9 39.6 1.0 N C:CYS54 4.0 26.7 1.0 CG2 C:VAL67 4.2 23.1 1.0 CA C:CYS54 4.3 23.6 1.0 CD1 C:LEU26 4.6 25.3 1.0 CA C:LYS52 4.8 19.5 1.0 N C:LYS52 4.8 27.3 1.0 N C:ARG53 4.8 29.4 1.0

Iron binding site 10 out of 12 in 8j7a

Iron Binding Sites List in 8j7a

Iron binding site 10 out of 12 in the Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 1 (Psi-ST1)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 1 (Psi-ST1) within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe101 b:48.1 occ:1.00 FE2 C:SF4101 0.0 48.1 1.0 S3 C:SF4101 2.3 48.3 1.0 S1 C:SF4101 2.3 39.6 1.0 S4 C:SF4101 2.3 44.2 1.0 FE4 C:SF4101 2.7 46.1 1.0 FE1 C:SF4101 2.7 36.5 1.0 FE3 C:SF4101 2.7 33.3 1.0 SG C:CYS48 3.0 35.2 1.0 CB C:CYS48 3.4 30.0 1.0 CA C:CYS48 3.8 28.4 1.0 S2 C:SF4101 3.9 48.4 1.0 N C:VAL49 4.2 24.8 1.0 N C:GLY50 4.2 32.2 1.0 C C:CYS48 4.5 31.2 1.0 CG2 C:VAL5 4.7 20.3 1.0 CG2 C:VAL25 4.7 35.0 1.0 CA C:GLY50 4.8 23.8 1.0 CG1 C:VAL25 4.8 33.6 1.0 CB C:VAL25 4.8 26.2 1.0

Reference: