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Iron in PDB 8j7b: Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 2 (Psi-ST2)

Enzymatic activity of Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 2 (Psi-ST2)

All present enzymatic activity of Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 2 (Psi-ST2):
1.97.1.12;

Other elements in 8j7b:

The structure of Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 2 (Psi-ST2) also contains other interesting chemical elements:

Magnesium (Mg) 154 atoms

Iron Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Iron atom in the Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 2 (Psi-ST2) (pdb code 8j7b). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 12 binding sites of Iron where determined in the Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 2 (Psi-ST2), PDB code: 8j7b:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 12 in 8j7b

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Iron binding site 1 out of 12 in the Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 2 (Psi-ST2)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 2 (Psi-ST2) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe854

b:28.5
occ:1.00
 FE1 A:SF4854 0.0 28.5 1.0
S2 A:SF4854 2.3 22.2 1.0
S4 A:SF4854 2.3 46.8 1.0
S3 A:SF4854 2.3 27.6 1.0
FE3 A:SF4854 2.7 46.1 1.0
FE2 A:SF4854 2.7 53.7 1.0
FE4 A:SF4854 2.7 44.4 1.0
SG B:CYS559 2.9 32.9 1.0
CB B:CYS559 3.3 9.1 1.0
S1 A:SF4854 3.9 50.7 1.0
CA B:CYS559 4.8 9.2 1.0
N B:GLY561 4.8 8.6 1.0
C B:GLY561 4.9 11.9 1.0
CA B:GLY561 4.9 7.3 1.0
SG A:CYS573 4.9 15.6 1.0
O B:GLY561 4.9 20.9 1.0

Iron binding site 2 out of 12 in 8j7b

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Iron binding site 2 out of 12 in the Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 2 (Psi-ST2)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 2 (Psi-ST2) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe854

b:53.7
occ:1.00
 FE2 A:SF4854 0.0 53.7 1.0
S3 A:SF4854 2.3 27.6 1.0
S4 A:SF4854 2.3 46.8 1.0
S1 A:SF4854 2.3 50.7 1.0
FE4 A:SF4854 2.7 44.4 1.0
FE1 A:SF4854 2.7 28.5 1.0
FE3 A:SF4854 2.7 46.1 1.0
SG B:CYS568 2.9 37.1 1.0
CB B:CYS568 3.5 17.1 1.0
S2 A:SF4854 3.9 22.2 1.0
CA B:CYS568 3.9 7.5 1.0
CZ3 B:TRP667 4.0 12.3 1.0
N B:CYS568 4.4 7.1 1.0
CD1 A:ILE719 4.6 5.1 1.0
CH2 B:TRP667 4.7 3.6 1.0
CE3 B:TRP667 4.8 9.8 1.0
CB B:CYS559 5.0 9.1 1.0

Iron binding site 3 out of 12 in 8j7b

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Iron binding site 3 out of 12 in the Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 2 (Psi-ST2)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 2 (Psi-ST2) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe854

b:46.1
occ:1.00
 FE3 A:SF4854 0.0 46.1 1.0
S1 A:SF4854 2.3 50.7 1.0
S4 A:SF4854 2.3 46.8 1.0
S2 A:SF4854 2.3 22.2 1.0
FE1 A:SF4854 2.7 28.5 1.0
FE2 A:SF4854 2.7 53.7 1.0
FE4 A:SF4854 2.7 44.4 1.0
SG A:CYS573 3.0 15.6 1.0
CB A:CYS573 3.3 3.9 1.0
S3 A:SF4854 3.9 27.6 1.0
CD1 A:ILE719 4.4 5.1 1.0
CA A:CYS573 4.7 4.5 1.0
CB B:PRO562 4.8 3.3 1.0
SG B:CYS568 4.9 37.1 1.0

Iron binding site 4 out of 12 in 8j7b

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Iron binding site 4 out of 12 in the Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 2 (Psi-ST2)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 2 (Psi-ST2) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe854

b:44.4
occ:1.00
 FE4 A:SF4854 0.0 44.4 1.0
S2 A:SF4854 2.3 22.2 1.0
S3 A:SF4854 2.3 27.6 1.0
S1 A:SF4854 2.3 50.7 1.0
FE2 A:SF4854 2.7 53.7 1.0
FE1 A:SF4854 2.7 28.5 1.0
FE3 A:SF4854 2.7 46.1 1.0
SG A:CYS582 2.9 29.5 1.0
CB A:CYS582 3.6 10.3 1.0
S4 A:SF4854 3.9 46.8 1.0
CZ3 B:TRP667 4.2 12.3 1.0
CE3 B:TRP667 4.2 9.8 1.0
CA A:CYS582 4.3 8.7 1.0
CB A:CYS573 4.7 3.9 1.0
CD1 B:ILE702 4.8 0.0 1.0
N A:CYS582 4.8 12.3 1.0

Iron binding site 5 out of 12 in 8j7b

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Iron binding site 5 out of 12 in the Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 2 (Psi-ST2)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 2 (Psi-ST2) within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe101

b:10.9
occ:1.00
 FE1 C:SF4101 0.0 10.9 1.0
S2 C:SF4101 2.3 16.9 1.0
S4 C:SF4101 2.3 11.2 1.0
S3 C:SF4101 2.3 7.4 1.0
FE2 C:SF4101 2.7 19.9 1.0
FE4 C:SF4101 2.7 17.8 1.0
FE3 C:SF4101 2.7 14.4 1.0
SG C:CYS54 3.0 9.4 1.0
CB C:CYS54 3.6 8.6 1.0
S1 C:SF4101 3.9 13.4 1.0
N C:CYS54 4.0 6.8 1.0
CG2 C:VAL67 4.0 7.3 1.0
CA C:CYS54 4.4 4.0 1.0
N C:ARG53 4.4 8.5 1.0
CA C:LYS52 4.5 2.6 1.0
N C:LYS52 4.5 4.8 1.0
C C:LYS52 4.8 5.1 1.0
CD1 C:LEU26 4.9 6.5 1.0

Iron binding site 6 out of 12 in 8j7b

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Iron binding site 6 out of 12 in the Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 2 (Psi-ST2)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 2 (Psi-ST2) within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe101

b:19.9
occ:1.00
 FE2 C:SF4101 0.0 19.9 1.0
S3 C:SF4101 2.3 7.4 1.0
S4 C:SF4101 2.3 11.2 1.0
S1 C:SF4101 2.3 13.4 1.0
FE4 C:SF4101 2.7 17.8 1.0
FE3 C:SF4101 2.7 14.4 1.0
FE1 C:SF4101 2.7 10.9 1.0
SG C:CYS48 2.9 22.6 1.0
CB C:CYS48 3.8 13.0 1.0
S2 C:SF4101 3.9 16.9 1.0
N C:GLY50 4.0 9.3 1.0
CA C:CYS48 4.0 9.4 1.0
N C:VAL49 4.2 10.1 1.0
CA C:GLY50 4.5 6.5 1.0
C C:CYS48 4.6 11.4 1.0
CG2 C:VAL67 4.7 7.3 1.0
CG2 C:VAL5 4.7 4.8 1.0
CG1 C:VAL67 4.9 3.6 1.0
CG2 C:VAL25 4.9 9.8 1.0

Iron binding site 7 out of 12 in 8j7b

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Iron binding site 7 out of 12 in the Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 2 (Psi-ST2)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 2 (Psi-ST2) within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe101

b:14.4
occ:1.00
 FE3 C:SF4101 0.0 14.4 1.0
S4 C:SF4101 2.3 11.2 1.0
S1 C:SF4101 2.3 13.4 1.0
S2 C:SF4101 2.3 16.9 1.0
FE4 C:SF4101 2.7 17.8 1.0
FE2 C:SF4101 2.7 19.9 1.0
FE1 C:SF4101 2.7 10.9 1.0
SG C:CYS51 3.0 12.9 1.0
N C:LYS52 3.5 4.8 1.0
N C:CYS51 3.6 2.8 1.0
S3 C:SF4101 3.9 7.4 1.0
N C:ARG53 4.1 8.5 1.0
N C:GLY50 4.1 9.3 1.0
CA C:CYS51 4.2 9.4 1.0
CB C:CYS51 4.2 10.6 1.0
C C:CYS51 4.2 11.0 1.0
CD C:PRO22 4.2 10.8 1.0
CA C:LYS52 4.3 2.6 1.0
C C:GLY50 4.3 5.1 1.0
CG2 C:VAL49 4.4 9.7 1.0
CG C:PRO22 4.4 9.1 1.0
CA C:GLY50 4.5 6.5 1.0
C C:LYS52 4.7 5.1 1.0
CB C:ARG53 5.0 5.7 1.0

Iron binding site 8 out of 12 in 8j7b

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Iron binding site 8 out of 12 in the Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 2 (Psi-ST2)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 2 (Psi-ST2) within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe101

b:17.8
occ:1.00
 FE4 C:SF4101 0.0 17.8 1.0
S1 C:SF4101 2.3 13.4 1.0
S2 C:SF4101 2.3 16.9 1.0
S3 C:SF4101 2.3 7.4 1.0
FE2 C:SF4101 2.7 19.9 1.0
FE3 C:SF4101 2.7 14.4 1.0
FE1 C:SF4101 2.7 10.9 1.0
SG C:CYS21 2.9 12.0 1.0
CD C:PRO22 3.8 10.8 1.0
S4 C:SF4101 3.9 11.2 1.0
CB C:CYS21 4.1 8.8 1.0
CA C:CYS21 4.2 5.8 1.0
CB C:VAL25 4.4 8.6 1.0
CG2 C:VAL25 4.5 9.8 1.0
OG1 C:THR23 4.6 19.2 1.0
CG C:PRO22 4.6 9.1 1.0
N C:PRO22 4.7 8.4 1.0
C C:CYS21 4.9 11.9 1.0
CG1 C:VAL25 4.9 10.5 1.0

Iron binding site 9 out of 12 in 8j7b

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Iron binding site 9 out of 12 in the Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 2 (Psi-ST2)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 2 (Psi-ST2) within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe102

b:27.7
occ:1.00
 FE1 C:SF4102 0.0 27.7 1.0
S3 C:SF4102 2.3 15.1 1.0
S2 C:SF4102 2.3 20.7 1.0
S4 C:SF4102 2.3 22.8 1.0
FE4 C:SF4102 2.7 26.5 1.0
FE2 C:SF4102 2.7 25.6 1.0
FE3 C:SF4102 2.7 31.9 1.0
SG C:CYS58 3.0 26.4 1.0
CB C:CYS58 3.6 12.4 1.0
CA C:CYS58 3.7 9.6 1.0
S1 C:SF4102 3.9 17.5 1.0
CD C:PRO59 4.0 10.1 1.0
CG1 C:VAL65 4.3 0.2 1.0
CB C:SER64 4.5 10.3 1.0
N C:CYS58 4.6 13.1 1.0
C C:CYS58 4.7 12.3 1.0
N C:PRO59 4.7 7.7 1.0
CB C:CYS17 4.9 6.4 1.0
OG C:SER64 4.9 13.4 1.0
O C:ALA57 5.0 15.9 1.0

Iron binding site 10 out of 12 in 8j7b

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Iron binding site 10 out of 12 in the Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 2 (Psi-ST2)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Coordinates of Cryo-Em Structure of the Arabidopsis Thaliana Psi in State 2 (Psi-ST2) within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe102

b:25.6
occ:1.00
 FE2 C:SF4102 0.0 25.6 1.0
S1 C:SF4102 2.3 17.5 1.0
S4 C:SF4102 2.3 22.8 1.0
S3 C:SF4102 2.3 15.1 1.0
FE1 C:SF4102 2.7 27.7 1.0
FE3 C:SF4102 2.7 31.9 1.0
FE4 C:SF4102 2.7 26.5 1.0
SG C:CYS17 3.0 17.4 1.0
CB C:CYS17 3.4 6.4 1.0
N C:CYS17 3.8 8.1 1.0
S2 C:SF4102 3.9 20.7 1.0
CA C:CYS17 4.2 4.7 1.0
CE C:MET28 4.4 11.1 1.0
N C:GLN16 4.4 10.5 1.0
CB C:ALA40 4.6 6.7 1.0
N C:THR15 4.8 12.8 1.0
C C:GLN16 4.8 7.5 1.0
SG C:CYS14 5.0 15.5 1.0

Reference:

S.J.B.Chen, J.H.Wu, S.F.Sui, L.X.Zhang. Cryo-Em Structure of the Arabidopsis Thaliana Photosystem I(Psi-Lhcii-ST2) To Be Published.
Page generated: Thu Dec 28 06:03:13 2023

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