Atomistry » Iron » PDB 8ire-8ji2 » 8j9m
Atomistry »
  Iron »
    PDB 8ire-8ji2 »
      8j9m »

Iron in PDB 8j9m: Crystal Structure of Human H-Ferritin Variant 123F Assembling in SOLUTION3

Enzymatic activity of Crystal Structure of Human H-Ferritin Variant 123F Assembling in SOLUTION3

All present enzymatic activity of Crystal Structure of Human H-Ferritin Variant 123F Assembling in SOLUTION3:
1.16.3.1;

Protein crystallography data

The structure of Crystal Structure of Human H-Ferritin Variant 123F Assembling in SOLUTION3, PDB code: 8j9m was solved by X.Chen, G.Zhao, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.57 / 2.90
Space group I 4 2 2
Cell size a, b, c (Å), α, β, γ (°) 143.331, 143.331, 166.663, 90, 90, 90
R / Rfree (%) 20.3 / 24.3

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of Human H-Ferritin Variant 123F Assembling in SOLUTION3 (pdb code 8j9m). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 8 binding sites of Iron where determined in the Crystal Structure of Human H-Ferritin Variant 123F Assembling in SOLUTION3, PDB code: 8j9m:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Iron binding site 1 out of 8 in 8j9m

Go back to Iron Binding Sites List in 8j9m
Iron binding site 1 out of 8 in the Crystal Structure of Human H-Ferritin Variant 123F Assembling in SOLUTION3


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of Human H-Ferritin Variant 123F Assembling in SOLUTION3 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe201

b:65.9
occ:1.00
 OE2 A:GLU62 2.3 49.0 1.0
OE2 A:GLU27 2.3 56.4 1.0
ND1 A:HIS65 2.5 58.1 1.0
OE1 A:GLU62 2.9 57.9 1.0
CD A:GLU62 3.0 55.6 1.0
CE1 A:HIS65 3.2 61.6 1.0
CD A:GLU27 3.3 50.5 1.0
OE1 A:GLU27 3.5 44.7 1.0
OE1 A:GLN141 3.5 50.9 1.0
CG A:HIS65 3.5 60.8 1.0
O A:HOH302 3.7 50.9 1.0
CG1 A:VAL110 4.0 48.1 1.0
CB A:HIS65 4.0 50.0 1.0
OE1 A:GLU107 4.3 55.9 1.0
NE2 A:HIS65 4.3 64.8 1.0
CG A:GLU62 4.4 46.8 1.0
CD A:GLN141 4.5 49.4 1.0
CD2 A:HIS65 4.5 59.9 1.0
CG A:GLU27 4.7 38.5 1.0
CA A:GLU62 4.9 50.4 1.0
CB A:GLU62 5.0 44.0 1.0

Iron binding site 2 out of 8 in 8j9m

Go back to Iron Binding Sites List in 8j9m
Iron binding site 2 out of 8 in the Crystal Structure of Human H-Ferritin Variant 123F Assembling in SOLUTION3


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure of Human H-Ferritin Variant 123F Assembling in SOLUTION3 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe202

b:90.9
occ:0.50
 CE1 A:HIS173 3.0 45.7 1.0
ND1 A:HIS173 3.9 45.1 1.0
NE2 A:HIS173 3.9 44.7 1.0
CD2 A:LEU169 4.1 42.6 1.0
CD1 A:LEU169 5.0 48.0 1.0

Iron binding site 3 out of 8 in 8j9m

Go back to Iron Binding Sites List in 8j9m
Iron binding site 3 out of 8 in the Crystal Structure of Human H-Ferritin Variant 123F Assembling in SOLUTION3


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Crystal Structure of Human H-Ferritin Variant 123F Assembling in SOLUTION3 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe203

b:103.3
occ:1.00
 OE1 A:GLN58 2.6 71.1 1.0
O A:HOH302 2.8 50.9 1.0
OE2 A:GLU107 2.8 59.3 1.0
OE1 A:GLU62 3.1 57.9 1.0
OE1 A:GLU61 3.5 75.3 1.0
CD A:GLN58 3.7 65.5 1.0
CD A:GLU107 3.7 58.4 1.0
CB A:ALA144 3.8 37.8 1.0
NE2 A:GLN58 4.2 67.0 1.0
OE1 A:GLU107 4.2 55.9 1.0
CD A:GLU62 4.3 55.6 1.0
CE1 A:HIS65 4.4 61.6 1.0
OE1 A:GLU140 4.5 75.7 1.0
CD A:GLU61 4.7 80.0 1.0
CG A:GLU107 4.8 42.0 1.0
OH A:TYR34 4.8 44.1 1.0
CG A:GLU62 4.8 46.8 1.0
CE2 A:TYR34 5.0 43.0 1.0
CG A:GLN58 5.0 48.5 1.0
CB A:GLU61 5.0 50.0 1.0

Iron binding site 4 out of 8 in 8j9m

Go back to Iron Binding Sites List in 8j9m
Iron binding site 4 out of 8 in the Crystal Structure of Human H-Ferritin Variant 123F Assembling in SOLUTION3


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Crystal Structure of Human H-Ferritin Variant 123F Assembling in SOLUTION3 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe201

b:60.6
occ:1.00
 OE2 B:GLU27 2.5 61.0 1.0
OE1 B:GLU62 2.6 55.2 1.0
ND1 B:HIS65 2.7 52.5 1.0
OE2 B:GLU62 2.9 71.1 1.0
CD B:GLU62 3.1 63.0 1.0
OE1 B:GLN141 3.1 57.7 1.0
OE1 B:GLU27 3.1 46.3 1.0
CD B:GLU27 3.2 51.6 1.0
CE1 B:HIS65 3.4 59.4 1.0
CG B:HIS65 3.6 56.4 1.0
CG1 B:VAL110 3.9 46.2 1.0
CB B:HIS65 4.0 49.6 1.0
CD B:GLN141 4.1 50.0 1.0
NE2 B:HIS65 4.4 65.0 1.0
OE1 B:GLU107 4.5 63.9 1.0
CD2 B:HIS65 4.5 56.8 1.0
CG B:GLU62 4.6 54.8 1.0
NE2 B:GLN141 4.6 48.6 1.0
CG B:GLU27 4.7 40.2 1.0
CB B:VAL110 4.9 48.1 1.0
CD2 B:TYR137 5.0 49.0 1.0

Iron binding site 5 out of 8 in 8j9m

Go back to Iron Binding Sites List in 8j9m
Iron binding site 5 out of 8 in the Crystal Structure of Human H-Ferritin Variant 123F Assembling in SOLUTION3


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Crystal Structure of Human H-Ferritin Variant 123F Assembling in SOLUTION3 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe202

b:98.7
occ:1.00
 NE2 B:GLN58 2.5 63.0 1.0
OE2 B:GLU107 3.1 59.6 1.0
OE2 B:GLU62 3.6 71.1 1.0
OE1 B:GLU61 3.7 65.1 1.0
CD B:GLN58 3.8 59.9 1.0
CB B:GLN58 4.2 46.8 1.0
CD B:GLU107 4.2 66.2 1.0
CD B:GLU62 4.4 63.0 1.0
CG B:GLU62 4.4 54.8 1.0
CA B:GLN58 4.5 43.8 1.0
O B:GLN58 4.5 46.0 1.0
CG B:GLN58 4.6 54.0 1.0
CE2 B:TYR34 4.6 51.9 1.0
OE1 B:GLU107 4.6 63.9 1.0
OE1 B:GLN58 4.7 61.9 1.0
CB B:ALA144 4.7 34.5 1.0
CB B:GLU61 4.7 50.8 1.0
OH B:TYR34 4.7 52.9 1.0
CD B:GLU61 4.8 73.9 1.0
CZ B:TYR34 4.9 56.5 1.0
C B:GLN58 5.0 45.6 1.0
CE1 B:HIS65 5.0 59.4 1.0

Iron binding site 6 out of 8 in 8j9m

Go back to Iron Binding Sites List in 8j9m
Iron binding site 6 out of 8 in the Crystal Structure of Human H-Ferritin Variant 123F Assembling in SOLUTION3


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Crystal Structure of Human H-Ferritin Variant 123F Assembling in SOLUTION3 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe201

b:61.9
occ:1.00
 OE2 C:GLU27 2.4 55.6 1.0
OE1 C:GLU62 2.4 52.4 1.0
OE2 C:GLU62 2.6 71.0 1.0
ND1 C:HIS65 2.7 59.8 1.0
CD C:GLU62 2.9 59.7 1.0
NE2 C:GLN141 2.9 60.9 1.0
CD C:GLU27 3.1 49.9 1.0
OE1 C:GLU27 3.1 51.6 1.0
CE1 C:HIS65 3.4 64.7 1.0
CG C:HIS65 3.6 55.9 1.0
CB C:HIS65 3.9 50.8 1.0
CD C:GLN141 4.1 54.9 1.0
CG1 C:VAL110 4.1 47.4 1.0
O C:HOH307 4.2 55.1 1.0
CG C:GLU62 4.4 52.1 1.0
NE2 C:HIS65 4.4 65.2 1.0
OE1 C:GLN141 4.5 58.4 1.0
CD2 C:HIS65 4.5 57.4 1.0
CG C:GLU27 4.6 41.6 1.0
OE2 C:GLU107 4.6 65.5 1.0
CD2 C:TYR137 4.9 51.9 1.0
CB C:VAL110 5.0 50.8 1.0
CA C:GLU62 5.0 50.6 1.0

Iron binding site 7 out of 8 in 8j9m

Go back to Iron Binding Sites List in 8j9m
Iron binding site 7 out of 8 in the Crystal Structure of Human H-Ferritin Variant 123F Assembling in SOLUTION3


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Crystal Structure of Human H-Ferritin Variant 123F Assembling in SOLUTION3 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe202

b:107.5
occ:1.00
 OE2 C:GLU61 2.4 76.5 1.0
O C:HOH307 2.9 55.1 1.0
OE1 C:GLU107 3.1 66.2 1.0
OE1 C:GLN58 3.1 65.1 1.0
CD C:GLU61 3.3 77.9 1.0
OE2 C:GLU62 3.4 71.0 1.0
CG C:GLU61 3.9 68.4 1.0
CD C:GLU107 4.0 61.4 1.0
CB C:ALA144 4.0 37.3 1.0
OE2 C:GLU107 4.2 65.5 1.0
CD C:GLN58 4.3 56.9 1.0
OE1 C:GLU61 4.3 82.8 1.0
CD C:GLU62 4.3 59.7 1.0
CG C:GLU62 4.6 52.1 1.0
CE1 C:HIS65 4.7 64.7 1.0
OH C:TYR34 4.9 45.4 1.0
CE2 C:TYR34 4.9 43.5 1.0
CB C:GLN58 4.9 47.6 1.0
O C:GLN58 4.9 46.8 1.0

Iron binding site 8 out of 8 in 8j9m

Go back to Iron Binding Sites List in 8j9m
Iron binding site 8 out of 8 in the Crystal Structure of Human H-Ferritin Variant 123F Assembling in SOLUTION3


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Crystal Structure of Human H-Ferritin Variant 123F Assembling in SOLUTION3 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe203

b:100.5
occ:0.25
 NE2 C:HIS173 3.1 42.1 1.0
CE1 C:HIS173 4.0 50.3 1.0
CD2 C:HIS173 4.0 46.9 1.0
CD2 C:LEU169 4.5 43.5 1.0

Reference:

X.Chen, T.Zhang, H.Liu, J.Zang, C.Lv, M.Du, G.Zhao. Shape-Anisotropic Assembly of Protein Nanocages with Identical Building Blocks By Designed Intermolecular Pi-Pi Interactions. Adv Sci V. 10 05398 2023.
ISSN: ESSN 2198-3844
PubMed: 37870198
DOI: 10.1002/ADVS.202305398
Page generated: Sat Aug 10 06:37:28 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy