Atomistry » Iron » PDB 8ji3-8k6k » 8jno
Atomistry »
  Iron »
    PDB 8ji3-8k6k »
      8jno »

Iron in PDB 8jno: Crystal Structure of Cytochrome P450 Ikad From Streptomyces Sp. ZJ306, in Complex with the Substrate 10-Epi-Deoh-Hsaf

Protein crystallography data

The structure of Crystal Structure of Cytochrome P450 Ikad From Streptomyces Sp. ZJ306, in Complex with the Substrate 10-Epi-Deoh-Hsaf, PDB code: 8jno was solved by Y.L.Zhang, L.P.Zhang, C.S.Zhang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 12.91 / 2.00
Space group I 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 92.032, 82.178, 144.422, 90, 94.32, 90
R / Rfree (%) 21.4 / 26.7

Other elements in 8jno:

The structure of Crystal Structure of Cytochrome P450 Ikad From Streptomyces Sp. ZJ306, in Complex with the Substrate 10-Epi-Deoh-Hsaf also contains other interesting chemical elements:

Sodium (Na) 1 atom

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of Cytochrome P450 Ikad From Streptomyces Sp. ZJ306, in Complex with the Substrate 10-Epi-Deoh-Hsaf (pdb code 8jno). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Crystal Structure of Cytochrome P450 Ikad From Streptomyces Sp. ZJ306, in Complex with the Substrate 10-Epi-Deoh-Hsaf, PDB code: 8jno:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 8jno

Go back to Iron Binding Sites List in 8jno
Iron binding site 1 out of 2 in the Crystal Structure of Cytochrome P450 Ikad From Streptomyces Sp. ZJ306, in Complex with the Substrate 10-Epi-Deoh-Hsaf


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of Cytochrome P450 Ikad From Streptomyces Sp. ZJ306, in Complex with the Substrate 10-Epi-Deoh-Hsaf within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe501

b:6.1
occ:1.00
FE A:HEM501 0.0 6.1 1.0
NC A:HEM501 2.0 5.0 1.0
NA A:HEM501 2.1 3.4 1.0
NB A:HEM501 2.1 7.1 1.0
ND A:HEM501 2.1 2.4 1.0
SG A:CYS357 2.3 6.1 1.0
C1C A:HEM501 3.0 3.1 1.0
C4B A:HEM501 3.0 10.8 1.0
C4C A:HEM501 3.0 2.7 1.0
C1A A:HEM501 3.1 3.7 1.0
C4A A:HEM501 3.1 4.2 1.0
C1D A:HEM501 3.1 3.1 1.0
C1B A:HEM501 3.1 5.0 1.0
C4D A:HEM501 3.1 1.3 1.0
HB2 A:CYS357 3.2 6.4 1.0
CB A:CYS357 3.3 5.4 1.0
CHC A:HEM501 3.4 4.2 1.0
CHD A:HEM501 3.4 3.3 1.0
CHA A:HEM501 3.5 2.0 1.0
CHB A:HEM501 3.5 7.7 1.0
HC27 A:E8T502 3.6 9.8 1.0
HA A:CYS357 3.6 6.4 1.0
HC30 A:E8T502 4.0 11.7 1.0
CA A:CYS357 4.0 5.4 1.0
H A:GLY359 4.0 1.7 1.0
HB3 A:CYS357 4.1 6.4 1.0
C2C A:HEM501 4.2 4.3 1.0
C3C A:HEM501 4.2 2.9 1.0
HB1 A:ALA245 4.2 9.0 1.0
C3B A:HEM501 4.3 7.9 1.0
C3A A:HEM501 4.3 4.1 1.0
C2A A:HEM501 4.3 2.6 1.0
C2D A:HEM501 4.3 2.5 1.0
C2B A:HEM501 4.3 7.7 1.0
HHC A:HEM501 4.3 5.1 1.0
C3D A:HEM501 4.3 2.0 1.0
H29A A:E8T502 4.4 8.9 1.0
HHD A:HEM501 4.4 4.0 1.0
HHA A:HEM501 4.4 2.3 1.0
HHB A:HEM501 4.5 9.2 1.0
HD1 A:PHE350 4.5 6.4 1.0
C27 A:E8T502 4.5 8.2 1.0
H A:ILE358 4.7 3.5 1.0
HC28 A:E8T502 4.7 10.7 1.0
HA3 A:GLY359 4.8 7.4 1.0
C A:CYS357 4.8 3.2 1.0
C29 A:E8T502 4.8 7.5 1.0
N A:GLY359 4.9 1.4 1.0
C30 A:E8T502 4.9 9.8 1.0
N A:ILE358 4.9 2.9 1.0

Iron binding site 2 out of 2 in 8jno

Go back to Iron Binding Sites List in 8jno
Iron binding site 2 out of 2 in the Crystal Structure of Cytochrome P450 Ikad From Streptomyces Sp. ZJ306, in Complex with the Substrate 10-Epi-Deoh-Hsaf


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure of Cytochrome P450 Ikad From Streptomyces Sp. ZJ306, in Complex with the Substrate 10-Epi-Deoh-Hsaf within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe501

b:6.2
occ:1.00
FE B:HEM501 0.0 6.2 1.0
NB B:HEM501 2.1 3.4 1.0
NA B:HEM501 2.1 1.3 1.0
NC B:HEM501 2.1 5.0 1.0
ND B:HEM501 2.1 2.3 1.0
SG B:CYS357 2.4 2.0 1.0
C4B B:HEM501 3.0 6.3 1.0
C1D B:HEM501 3.0 2.8 1.0
C1C B:HEM501 3.0 4.4 1.0
C4C B:HEM501 3.0 3.9 1.0
C4A B:HEM501 3.1 5.4 1.0
HB2 B:CYS357 3.1 5.2 1.0
C4D B:HEM501 3.1 4.0 1.0
C1A B:HEM501 3.1 4.1 1.0
C1B B:HEM501 3.1 2.8 1.0
CB B:CYS357 3.3 4.4 1.0
CHC B:HEM501 3.4 3.3 1.0
CHD B:HEM501 3.4 4.8 1.0
CHB B:HEM501 3.5 3.7 1.0
CHA B:HEM501 3.5 2.8 1.0
HC27 B:E8T502 3.7 15.1 1.0
HA B:CYS357 3.7 5.1 1.0
HC30 B:E8T502 4.0 10.3 1.0
H B:GLY359 4.1 11.2 1.0
H29B B:E8T502 4.1 8.3 1.0
CA B:CYS357 4.1 4.3 1.0
HB3 B:CYS357 4.1 5.2 1.0
HB1 B:ALA245 4.2 13.4 1.0
C3C B:HEM501 4.2 3.0 1.0
C2C B:HEM501 4.2 5.4 1.0
C3B B:HEM501 4.2 5.1 1.0
C2D B:HEM501 4.3 3.3 1.0
C3D B:HEM501 4.3 1.6 1.0
C3A B:HEM501 4.3 3.6 1.0
C2A B:HEM501 4.3 3.2 1.0
C2B B:HEM501 4.3 7.0 1.0
HHC B:HEM501 4.4 3.9 1.0
HHD B:HEM501 4.4 5.7 1.0
HHB B:HEM501 4.4 4.5 1.0
HHA B:HEM501 4.4 3.3 1.0
HD1 B:PHE350 4.5 3.7 1.0
C27 B:E8T502 4.6 12.6 1.0
C29 B:E8T502 4.7 6.9 1.0
C30 B:E8T502 4.8 8.6 1.0
H B:ILE358 4.8 6.7 1.0
HA3 B:GLY359 4.8 9.2 1.0
C B:CYS357 4.9 3.4 1.0
N B:GLY359 4.9 9.3 1.0
HC28 B:E8T502 5.0 6.2 1.0

Reference:

P.Jiang, H.Jin, G.Zhang, W.Zhang, W.Liu, Y.Zhu, C.Zhang, L.Zhang. A Mechanistic Understanding of the Distinct Regio- and Chemoselectivity of Multifunctional P450S By Structural Comparison of Ikad and Cfta Complexed with Common Substrates. Angew.Chem.Int.Ed.Engl. 10728 2023.
ISSN: ESSN 1521-3773
PubMed: 37917570
DOI: 10.1002/ANIE.202310728
Page generated: Sat Aug 10 07:19:31 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy