Iron in PDB 8js5: Dimeric Pas Domains of Oxygen Sensor Fixl with Ferric Unliganded Heme
Enzymatic activity of Dimeric Pas Domains of Oxygen Sensor Fixl with Ferric Unliganded Heme
All present enzymatic activity of Dimeric Pas Domains of Oxygen Sensor Fixl with Ferric Unliganded Heme:
2.7.13.3;
Protein crystallography data
The structure of Dimeric Pas Domains of Oxygen Sensor Fixl with Ferric Unliganded Heme, PDB code: 8js5
was solved by
M.Kamaya,
H.Koteishi,
H.Sawai,
H.Sugimoto,
Y.Shiro,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
28.65 /
2.95
|
|
Space group
|
C 2 2 21
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
190.443,
194.147,
269.857,
90,
90,
90
|
|
R / Rfree (%)
|
20.7 /
24.6
|
Iron Binding Sites:
The binding sites of Iron atom in the Dimeric Pas Domains of Oxygen Sensor Fixl with Ferric Unliganded Heme
(pdb code 8js5). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 10 binding sites of Iron where determined in the
Dimeric Pas Domains of Oxygen Sensor Fixl with Ferric Unliganded Heme, PDB code: 8js5:
Jump to Iron binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Iron binding site 1 out
of 10 in 8js5
Go back to
Iron Binding Sites List in 8js5
Iron binding site 1 out
of 10 in the Dimeric Pas Domains of Oxygen Sensor Fixl with Ferric Unliganded Heme
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Dimeric Pas Domains of Oxygen Sensor Fixl with Ferric Unliganded Heme within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe601
b:86.5
occ:1.00
|
FE
|
A:HEM601
|
0.0
|
86.5
|
1.0
|
|
NB
|
A:HEM601
|
2.0
|
88.2
|
1.0
|
|
NE2
|
A:HIS200
|
2.0
|
66.0
|
1.0
|
|
ND
|
A:HEM601
|
2.0
|
82.9
|
1.0
|
|
NC
|
A:HEM601
|
2.0
|
102.4
|
1.0
|
|
NA
|
A:HEM601
|
2.1
|
95.1
|
1.0
|
|
CD2
|
A:HIS200
|
3.0
|
87.8
|
1.0
|
|
C4B
|
A:HEM601
|
3.0
|
81.4
|
1.0
|
|
C1C
|
A:HEM601
|
3.0
|
98.0
|
1.0
|
|
C1B
|
A:HEM601
|
3.0
|
92.7
|
1.0
|
|
CE1
|
A:HIS200
|
3.1
|
64.8
|
1.0
|
|
C4D
|
A:HEM601
|
3.1
|
89.1
|
1.0
|
|
C1D
|
A:HEM601
|
3.1
|
85.3
|
1.0
|
|
C4A
|
A:HEM601
|
3.1
|
100.5
|
1.0
|
|
C1A
|
A:HEM601
|
3.1
|
86.8
|
1.0
|
|
C4C
|
A:HEM601
|
3.1
|
92.0
|
1.0
|
|
CHC
|
A:HEM601
|
3.4
|
86.9
|
1.0
|
|
CHA
|
A:HEM601
|
3.5
|
93.2
|
1.0
|
|
CHB
|
A:HEM601
|
3.5
|
85.2
|
1.0
|
|
CHD
|
A:HEM601
|
3.5
|
79.0
|
1.0
|
|
CD2
|
A:LEU236
|
3.7
|
69.2
|
1.0
|
|
CG
|
A:HIS200
|
4.1
|
67.9
|
1.0
|
|
ND1
|
A:HIS200
|
4.1
|
65.6
|
1.0
|
|
C2B
|
A:HEM601
|
4.2
|
78.8
|
1.0
|
|
C3B
|
A:HEM601
|
4.2
|
76.9
|
1.0
|
|
C2C
|
A:HEM601
|
4.3
|
72.7
|
1.0
|
|
C2D
|
A:HEM601
|
4.3
|
77.7
|
1.0
|
|
C3C
|
A:HEM601
|
4.3
|
71.9
|
1.0
|
|
C3A
|
A:HEM601
|
4.3
|
75.7
|
1.0
|
|
C3D
|
A:HEM601
|
4.3
|
81.8
|
1.0
|
|
C2A
|
A:HEM601
|
4.3
|
84.0
|
1.0
|
|
CD1
|
A:ILE238
|
4.5
|
67.3
|
1.0
|
|
CD1
|
A:ILE215
|
4.7
|
88.7
|
1.0
|
|
CE
|
A:MET192
|
4.9
|
76.0
|
1.0
|
|
Iron binding site 2 out
of 10 in 8js5
Go back to
Iron Binding Sites List in 8js5
Iron binding site 2 out
of 10 in the Dimeric Pas Domains of Oxygen Sensor Fixl with Ferric Unliganded Heme
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Dimeric Pas Domains of Oxygen Sensor Fixl with Ferric Unliganded Heme within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe303
b:80.7
occ:1.00
|
FE
|
B:HEM303
|
0.0
|
80.7
|
1.0
|
|
NC
|
B:HEM303
|
2.0
|
77.3
|
1.0
|
|
ND
|
B:HEM303
|
2.0
|
80.1
|
1.0
|
|
NE2
|
B:HIS200
|
2.0
|
85.8
|
1.0
|
|
NA
|
B:HEM303
|
2.1
|
90.4
|
1.0
|
|
NB
|
B:HEM303
|
2.1
|
84.7
|
1.0
|
|
C1D
|
B:HEM303
|
3.0
|
85.0
|
1.0
|
|
C4C
|
B:HEM303
|
3.0
|
81.1
|
1.0
|
|
CD2
|
B:HIS200
|
3.0
|
79.8
|
1.0
|
|
CE1
|
B:HIS200
|
3.0
|
80.3
|
1.0
|
|
C1C
|
B:HEM303
|
3.0
|
82.0
|
1.0
|
|
C4A
|
B:HEM303
|
3.0
|
91.8
|
1.0
|
|
C1B
|
B:HEM303
|
3.1
|
78.1
|
1.0
|
|
C4D
|
B:HEM303
|
3.1
|
80.8
|
1.0
|
|
C1A
|
B:HEM303
|
3.1
|
98.7
|
1.0
|
|
C4B
|
B:HEM303
|
3.1
|
82.9
|
1.0
|
|
CHD
|
B:HEM303
|
3.3
|
74.0
|
1.0
|
|
CHB
|
B:HEM303
|
3.4
|
87.9
|
1.0
|
|
CHC
|
B:HEM303
|
3.5
|
83.0
|
1.0
|
|
CHA
|
B:HEM303
|
3.5
|
85.0
|
1.0
|
|
CD2
|
B:LEU236
|
3.8
|
72.5
|
1.0
|
|
ND1
|
B:HIS200
|
4.1
|
84.0
|
1.0
|
|
CG
|
B:HIS200
|
4.2
|
90.1
|
1.0
|
|
C2D
|
B:HEM303
|
4.2
|
82.2
|
1.0
|
|
C3C
|
B:HEM303
|
4.2
|
78.5
|
1.0
|
|
C2C
|
B:HEM303
|
4.2
|
75.2
|
1.0
|
|
C3D
|
B:HEM303
|
4.3
|
69.4
|
1.0
|
|
C3A
|
B:HEM303
|
4.3
|
107.0
|
1.0
|
|
C2B
|
B:HEM303
|
4.3
|
85.0
|
1.0
|
|
C2A
|
B:HEM303
|
4.3
|
106.6
|
1.0
|
|
C3B
|
B:HEM303
|
4.3
|
88.0
|
1.0
|
|
CD1
|
B:ILE238
|
4.7
|
85.7
|
1.0
|
|
CE
|
B:MET192
|
4.8
|
87.3
|
1.0
|
|
CD1
|
B:ILE215
|
4.8
|
100.4
|
1.0
|
|
Iron binding site 3 out
of 10 in 8js5
Go back to
Iron Binding Sites List in 8js5
Iron binding site 3 out
of 10 in the Dimeric Pas Domains of Oxygen Sensor Fixl with Ferric Unliganded Heme
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Dimeric Pas Domains of Oxygen Sensor Fixl with Ferric Unliganded Heme within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe601
b:95.2
occ:1.00
|
FE
|
C:HEM601
|
0.0
|
95.2
|
1.0
|
|
NE2
|
C:HIS200
|
2.0
|
80.6
|
1.0
|
|
NC
|
C:HEM601
|
2.0
|
89.8
|
1.0
|
|
ND
|
C:HEM601
|
2.0
|
81.1
|
1.0
|
|
NB
|
C:HEM601
|
2.0
|
84.3
|
1.0
|
|
NA
|
C:HEM601
|
2.1
|
92.0
|
1.0
|
|
CE1
|
C:HIS200
|
2.9
|
80.8
|
1.0
|
|
C4C
|
C:HEM601
|
3.0
|
87.2
|
1.0
|
|
CD2
|
C:HIS200
|
3.0
|
80.9
|
1.0
|
|
C1D
|
C:HEM601
|
3.0
|
77.4
|
1.0
|
|
C1B
|
C:HEM601
|
3.0
|
85.0
|
1.0
|
|
C1C
|
C:HEM601
|
3.0
|
84.2
|
1.0
|
|
C4A
|
C:HEM601
|
3.1
|
90.9
|
1.0
|
|
C4B
|
C:HEM601
|
3.1
|
85.6
|
1.0
|
|
C4D
|
C:HEM601
|
3.1
|
86.7
|
1.0
|
|
C1A
|
C:HEM601
|
3.1
|
94.4
|
1.0
|
|
CHD
|
C:HEM601
|
3.4
|
74.9
|
1.0
|
|
CHB
|
C:HEM601
|
3.4
|
90.0
|
1.0
|
|
CHC
|
C:HEM601
|
3.4
|
77.2
|
1.0
|
|
CHA
|
C:HEM601
|
3.5
|
84.9
|
1.0
|
|
CD2
|
C:LEU236
|
3.7
|
59.7
|
1.0
|
|
ND1
|
C:HIS200
|
4.0
|
94.3
|
1.0
|
|
CG
|
C:HIS200
|
4.1
|
90.4
|
1.0
|
|
C3C
|
C:HEM601
|
4.2
|
84.4
|
1.0
|
|
C2C
|
C:HEM601
|
4.2
|
78.5
|
1.0
|
|
C2D
|
C:HEM601
|
4.3
|
70.3
|
1.0
|
|
C2B
|
C:HEM601
|
4.3
|
92.8
|
1.0
|
|
C3D
|
C:HEM601
|
4.3
|
74.8
|
1.0
|
|
C3B
|
C:HEM601
|
4.3
|
94.6
|
1.0
|
|
C3A
|
C:HEM601
|
4.3
|
98.6
|
1.0
|
|
C2A
|
C:HEM601
|
4.3
|
102.8
|
1.0
|
|
CD1
|
C:ILE238
|
4.5
|
61.1
|
1.0
|
|
CD1
|
C:ILE215
|
4.8
|
100.2
|
1.0
|
|
CE
|
C:MET192
|
4.9
|
83.0
|
1.0
|
|
CG
|
C:LEU236
|
5.0
|
87.6
|
1.0
|
|
Iron binding site 4 out
of 10 in 8js5
Go back to
Iron Binding Sites List in 8js5
Iron binding site 4 out
of 10 in the Dimeric Pas Domains of Oxygen Sensor Fixl with Ferric Unliganded Heme
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Dimeric Pas Domains of Oxygen Sensor Fixl with Ferric Unliganded Heme within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Fe303
b:85.9
occ:1.00
|
FE
|
D:HEM303
|
0.0
|
85.9
|
1.0
|
|
NA
|
D:HEM303
|
2.0
|
90.2
|
1.0
|
|
NB
|
D:HEM303
|
2.0
|
80.8
|
1.0
|
|
ND
|
D:HEM303
|
2.0
|
77.8
|
1.0
|
|
NC
|
D:HEM303
|
2.1
|
96.8
|
1.0
|
|
NE2
|
D:HIS200
|
2.1
|
73.3
|
1.0
|
|
C1B
|
D:HEM303
|
3.0
|
79.1
|
1.0
|
|
C4A
|
D:HEM303
|
3.0
|
94.9
|
1.0
|
|
CD2
|
D:HIS200
|
3.0
|
84.2
|
1.0
|
|
C1D
|
D:HEM303
|
3.1
|
81.9
|
1.0
|
|
C4B
|
D:HEM303
|
3.1
|
84.7
|
1.0
|
|
C1C
|
D:HEM303
|
3.1
|
88.9
|
1.0
|
|
C4D
|
D:HEM303
|
3.1
|
92.3
|
1.0
|
|
C1A
|
D:HEM303
|
3.1
|
84.5
|
1.0
|
|
C4C
|
D:HEM303
|
3.1
|
85.0
|
1.0
|
|
CE1
|
D:HIS200
|
3.1
|
80.8
|
1.0
|
|
CHB
|
D:HEM303
|
3.4
|
77.4
|
1.0
|
|
CHD
|
D:HEM303
|
3.4
|
80.8
|
1.0
|
|
CHC
|
D:HEM303
|
3.5
|
84.9
|
1.0
|
|
CHA
|
D:HEM303
|
3.5
|
87.7
|
1.0
|
|
CD2
|
D:LEU236
|
3.8
|
63.6
|
1.0
|
|
CG
|
D:HIS200
|
4.2
|
65.2
|
1.0
|
|
ND1
|
D:HIS200
|
4.2
|
55.8
|
1.0
|
|
C2B
|
D:HEM303
|
4.2
|
77.2
|
1.0
|
|
C3A
|
D:HEM303
|
4.2
|
76.6
|
1.0
|
|
C3B
|
D:HEM303
|
4.3
|
87.1
|
1.0
|
|
C2D
|
D:HEM303
|
4.3
|
78.6
|
1.0
|
|
C2A
|
D:HEM303
|
4.3
|
83.4
|
1.0
|
|
C3D
|
D:HEM303
|
4.3
|
79.8
|
1.0
|
|
C2C
|
D:HEM303
|
4.3
|
74.4
|
1.0
|
|
C3C
|
D:HEM303
|
4.3
|
77.3
|
1.0
|
|
CD1
|
D:ILE238
|
4.6
|
74.9
|
1.0
|
|
CD1
|
D:ILE215
|
4.6
|
76.6
|
1.0
|
|
CE
|
D:MET192
|
4.9
|
81.2
|
1.0
|
|
Iron binding site 5 out
of 10 in 8js5
Go back to
Iron Binding Sites List in 8js5
Iron binding site 5 out
of 10 in the Dimeric Pas Domains of Oxygen Sensor Fixl with Ferric Unliganded Heme
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of Dimeric Pas Domains of Oxygen Sensor Fixl with Ferric Unliganded Heme within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Fe601
b:97.0
occ:1.00
|
FE
|
E:HEM601
|
0.0
|
97.0
|
1.0
|
|
NA
|
E:HEM601
|
2.0
|
114.9
|
1.0
|
|
NE2
|
E:HIS200
|
2.0
|
96.7
|
1.0
|
|
NC
|
E:HEM601
|
2.0
|
103.5
|
1.0
|
|
NB
|
E:HEM601
|
2.0
|
109.4
|
1.0
|
|
ND
|
E:HEM601
|
2.1
|
103.3
|
1.0
|
|
CE1
|
E:HIS200
|
2.9
|
96.3
|
1.0
|
|
C1B
|
E:HEM601
|
3.0
|
107.2
|
1.0
|
|
C4B
|
E:HEM601
|
3.0
|
98.6
|
1.0
|
|
C4A
|
E:HEM601
|
3.0
|
124.6
|
1.0
|
|
C1C
|
E:HEM601
|
3.0
|
103.8
|
1.0
|
|
C1A
|
E:HEM601
|
3.1
|
117.0
|
1.0
|
|
C1D
|
E:HEM601
|
3.1
|
100.0
|
1.0
|
|
C4C
|
E:HEM601
|
3.1
|
94.3
|
1.0
|
|
C4D
|
E:HEM601
|
3.1
|
105.0
|
1.0
|
|
CD2
|
E:HIS200
|
3.1
|
103.0
|
1.0
|
|
CHC
|
E:HEM601
|
3.4
|
103.1
|
1.0
|
|
CHB
|
E:HEM601
|
3.4
|
117.3
|
1.0
|
|
CHD
|
E:HEM601
|
3.4
|
92.5
|
1.0
|
|
CHA
|
E:HEM601
|
3.4
|
110.3
|
1.0
|
|
CD2
|
E:LEU236
|
3.7
|
83.9
|
1.0
|
|
ND1
|
E:HIS200
|
4.1
|
92.1
|
1.0
|
|
C2B
|
E:HEM601
|
4.2
|
120.1
|
1.0
|
|
CG
|
E:HIS200
|
4.2
|
94.5
|
1.0
|
|
C3B
|
E:HEM601
|
4.2
|
110.6
|
1.0
|
|
C2A
|
E:HEM601
|
4.3
|
122.6
|
1.0
|
|
C3A
|
E:HEM601
|
4.3
|
115.0
|
1.0
|
|
C2C
|
E:HEM601
|
4.3
|
99.4
|
1.0
|
|
C3C
|
E:HEM601
|
4.3
|
98.9
|
1.0
|
|
C2D
|
E:HEM601
|
4.3
|
97.7
|
1.0
|
|
C3D
|
E:HEM601
|
4.3
|
96.2
|
1.0
|
|
CD1
|
E:ILE238
|
4.5
|
85.0
|
1.0
|
|
CD1
|
E:ILE215
|
4.6
|
99.9
|
1.0
|
|
CE
|
E:MET192
|
4.9
|
95.4
|
1.0
|
|
Iron binding site 6 out
of 10 in 8js5
Go back to
Iron Binding Sites List in 8js5
Iron binding site 6 out
of 10 in the Dimeric Pas Domains of Oxygen Sensor Fixl with Ferric Unliganded Heme
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of Dimeric Pas Domains of Oxygen Sensor Fixl with Ferric Unliganded Heme within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Fe302
b:98.9
occ:1.00
|
FE
|
F:HEM302
|
0.0
|
98.9
|
1.0
|
|
NC
|
F:HEM302
|
2.0
|
99.2
|
1.0
|
|
NE2
|
F:HIS200
|
2.0
|
88.9
|
1.0
|
|
ND
|
F:HEM302
|
2.0
|
98.9
|
1.0
|
|
NA
|
F:HEM302
|
2.1
|
113.3
|
1.0
|
|
NB
|
F:HEM302
|
2.1
|
106.2
|
1.0
|
|
CE1
|
F:HIS200
|
3.0
|
98.0
|
1.0
|
|
C4C
|
F:HEM302
|
3.0
|
97.5
|
1.0
|
|
CD2
|
F:HIS200
|
3.0
|
94.3
|
1.0
|
|
C1D
|
F:HEM302
|
3.0
|
90.0
|
1.0
|
|
C1C
|
F:HEM302
|
3.0
|
93.8
|
1.0
|
|
C4A
|
F:HEM302
|
3.1
|
113.1
|
1.0
|
|
C1B
|
F:HEM302
|
3.1
|
104.1
|
1.0
|
|
C4B
|
F:HEM302
|
3.1
|
100.5
|
1.0
|
|
C4D
|
F:HEM302
|
3.1
|
103.7
|
1.0
|
|
C1A
|
F:HEM302
|
3.1
|
111.5
|
1.0
|
|
CHD
|
F:HEM302
|
3.4
|
93.4
|
1.0
|
|
CHC
|
F:HEM302
|
3.4
|
98.7
|
1.0
|
|
CHB
|
F:HEM302
|
3.4
|
106.6
|
1.0
|
|
CHA
|
F:HEM302
|
3.5
|
107.0
|
1.0
|
|
CD2
|
F:LEU236
|
3.9
|
80.7
|
1.0
|
|
ND1
|
F:HIS200
|
4.1
|
95.7
|
1.0
|
|
CG
|
F:HIS200
|
4.2
|
100.3
|
1.0
|
|
C3C
|
F:HEM302
|
4.3
|
91.2
|
1.0
|
|
C2C
|
F:HEM302
|
4.3
|
79.6
|
1.0
|
|
C2D
|
F:HEM302
|
4.3
|
93.4
|
1.0
|
|
C2B
|
F:HEM302
|
4.3
|
98.9
|
1.0
|
|
C3D
|
F:HEM302
|
4.3
|
96.4
|
1.0
|
|
C3A
|
F:HEM302
|
4.3
|
117.6
|
1.0
|
|
C3B
|
F:HEM302
|
4.3
|
95.3
|
1.0
|
|
C2A
|
F:HEM302
|
4.3
|
119.9
|
1.0
|
|
CD1
|
F:ILE238
|
4.4
|
96.0
|
1.0
|
|
CD1
|
F:ILE215
|
4.7
|
101.7
|
1.0
|
|
CE
|
F:MET192
|
4.7
|
96.1
|
1.0
|
|
Iron binding site 7 out
of 10 in 8js5
Go back to
Iron Binding Sites List in 8js5
Iron binding site 7 out
of 10 in the Dimeric Pas Domains of Oxygen Sensor Fixl with Ferric Unliganded Heme
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 7 of Dimeric Pas Domains of Oxygen Sensor Fixl with Ferric Unliganded Heme within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Fe601
b:96.5
occ:1.00
|
FE
|
G:HEM601
|
0.0
|
96.5
|
1.0
|
|
NE2
|
G:HIS200
|
2.0
|
84.7
|
1.0
|
|
NC
|
G:HEM601
|
2.0
|
87.5
|
1.0
|
|
ND
|
G:HEM601
|
2.0
|
94.4
|
1.0
|
|
NA
|
G:HEM601
|
2.1
|
105.7
|
1.0
|
|
NB
|
G:HEM601
|
2.1
|
103.1
|
1.0
|
|
CD2
|
G:HIS200
|
2.9
|
94.6
|
1.0
|
|
C1C
|
G:HEM601
|
3.0
|
92.9
|
1.0
|
|
CE1
|
G:HIS200
|
3.0
|
97.9
|
1.0
|
|
C4D
|
G:HEM601
|
3.0
|
87.3
|
1.0
|
|
C1D
|
G:HEM601
|
3.1
|
97.6
|
1.0
|
|
C4C
|
G:HEM601
|
3.1
|
87.0
|
1.0
|
|
C1A
|
G:HEM601
|
3.1
|
107.1
|
1.0
|
|
C4B
|
G:HEM601
|
3.1
|
96.8
|
1.0
|
|
C4A
|
G:HEM601
|
3.1
|
105.8
|
1.0
|
|
C1B
|
G:HEM601
|
3.1
|
102.4
|
1.0
|
|
CHC
|
G:HEM601
|
3.4
|
93.8
|
1.0
|
|
CHA
|
G:HEM601
|
3.4
|
97.2
|
1.0
|
|
CHD
|
G:HEM601
|
3.4
|
90.9
|
1.0
|
|
CHB
|
G:HEM601
|
3.5
|
113.8
|
1.0
|
|
CD2
|
G:LEU236
|
3.7
|
85.6
|
1.0
|
|
ND1
|
G:HIS200
|
4.1
|
101.0
|
1.0
|
|
CG
|
G:HIS200
|
4.1
|
103.0
|
1.0
|
|
C2C
|
G:HEM601
|
4.2
|
88.6
|
1.0
|
|
C3D
|
G:HEM601
|
4.3
|
90.1
|
1.0
|
|
C2D
|
G:HEM601
|
4.3
|
94.1
|
1.0
|
|
C3C
|
G:HEM601
|
4.3
|
82.2
|
1.0
|
|
C2A
|
G:HEM601
|
4.3
|
113.2
|
1.0
|
|
C2B
|
G:HEM601
|
4.3
|
96.8
|
1.0
|
|
C3B
|
G:HEM601
|
4.3
|
94.6
|
1.0
|
|
C3A
|
G:HEM601
|
4.3
|
117.7
|
1.0
|
|
CD1
|
G:ILE238
|
4.5
|
83.3
|
1.0
|
|
CE
|
G:MET192
|
4.8
|
88.2
|
1.0
|
|
CD1
|
G:ILE215
|
4.9
|
109.4
|
1.0
|
|
Iron binding site 8 out
of 10 in 8js5
Go back to
Iron Binding Sites List in 8js5
Iron binding site 8 out
of 10 in the Dimeric Pas Domains of Oxygen Sensor Fixl with Ferric Unliganded Heme
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 8 of Dimeric Pas Domains of Oxygen Sensor Fixl with Ferric Unliganded Heme within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
H:Fe302
b:105.9
occ:1.00
|
FE
|
H:HEM302
|
0.0
|
105.9
|
1.0
|
|
NE2
|
H:HIS200
|
2.0
|
82.3
|
1.0
|
|
NC
|
H:HEM302
|
2.0
|
98.6
|
1.0
|
|
ND
|
H:HEM302
|
2.0
|
108.0
|
1.0
|
|
NB
|
H:HEM302
|
2.1
|
113.8
|
1.0
|
|
NA
|
H:HEM302
|
2.1
|
115.1
|
1.0
|
|
CE1
|
H:HIS200
|
3.0
|
99.3
|
1.0
|
|
C1C
|
H:HEM302
|
3.0
|
97.0
|
1.0
|
|
CD2
|
H:HIS200
|
3.0
|
96.3
|
1.0
|
|
C4C
|
H:HEM302
|
3.0
|
99.5
|
1.0
|
|
C1D
|
H:HEM302
|
3.0
|
94.1
|
1.0
|
|
C1B
|
H:HEM302
|
3.1
|
108.6
|
1.0
|
|
C4B
|
H:HEM302
|
3.1
|
106.6
|
1.0
|
|
C4A
|
H:HEM302
|
3.1
|
114.1
|
1.0
|
|
C4D
|
H:HEM302
|
3.1
|
99.9
|
1.0
|
|
C1A
|
H:HEM302
|
3.1
|
105.3
|
1.0
|
|
CHC
|
H:HEM302
|
3.4
|
104.7
|
1.0
|
|
CHD
|
H:HEM302
|
3.4
|
89.2
|
1.0
|
|
CHB
|
H:HEM302
|
3.4
|
105.2
|
1.0
|
|
CHA
|
H:HEM302
|
3.5
|
91.8
|
1.0
|
|
CD2
|
H:LEU236
|
3.7
|
96.5
|
1.0
|
|
ND1
|
H:HIS200
|
4.1
|
106.5
|
1.0
|
|
CG
|
H:HIS200
|
4.2
|
94.5
|
1.0
|
|
C2C
|
H:HEM302
|
4.2
|
89.0
|
1.0
|
|
C3C
|
H:HEM302
|
4.2
|
98.5
|
1.0
|
|
C2D
|
H:HEM302
|
4.3
|
83.7
|
1.0
|
|
C2B
|
H:HEM302
|
4.3
|
106.8
|
1.0
|
|
C3B
|
H:HEM302
|
4.3
|
107.5
|
1.0
|
|
C3D
|
H:HEM302
|
4.3
|
83.3
|
1.0
|
|
C3A
|
H:HEM302
|
4.3
|
106.5
|
1.0
|
|
C2A
|
H:HEM302
|
4.3
|
111.2
|
1.0
|
|
CD1
|
H:ILE238
|
4.5
|
81.5
|
1.0
|
|
CD1
|
H:ILE215
|
4.5
|
106.2
|
1.0
|
|
Iron binding site 9 out
of 10 in 8js5
Go back to
Iron Binding Sites List in 8js5
Iron binding site 9 out
of 10 in the Dimeric Pas Domains of Oxygen Sensor Fixl with Ferric Unliganded Heme
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 9 of Dimeric Pas Domains of Oxygen Sensor Fixl with Ferric Unliganded Heme within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
I:Fe601
b:100.0
occ:1.00
|
FE
|
I:HEM601
|
0.0
|
100.0
|
1.0
|
|
NA
|
I:HEM601
|
2.0
|
110.8
|
1.0
|
|
NB
|
I:HEM601
|
2.1
|
100.8
|
1.0
|
|
NE2
|
I:HIS200
|
2.1
|
100.0
|
1.0
|
|
NC
|
I:HEM601
|
2.1
|
112.6
|
1.0
|
|
ND
|
I:HEM601
|
2.1
|
99.4
|
1.0
|
|
C1B
|
I:HEM601
|
3.0
|
94.3
|
1.0
|
|
C4A
|
I:HEM601
|
3.0
|
114.6
|
1.0
|
|
CD2
|
I:HIS200
|
3.1
|
110.2
|
1.0
|
|
CE1
|
I:HIS200
|
3.1
|
103.4
|
1.0
|
|
C1D
|
I:HEM601
|
3.1
|
98.7
|
1.0
|
|
C4C
|
I:HEM601
|
3.1
|
100.2
|
1.0
|
|
C1C
|
I:HEM601
|
3.1
|
95.0
|
1.0
|
|
C4B
|
I:HEM601
|
3.1
|
100.7
|
1.0
|
|
C1A
|
I:HEM601
|
3.1
|
109.0
|
1.0
|
|
C4D
|
I:HEM601
|
3.1
|
92.5
|
1.0
|
|
CHB
|
I:HEM601
|
3.4
|
116.6
|
1.0
|
|
CHD
|
I:HEM601
|
3.4
|
97.8
|
1.0
|
|
CHC
|
I:HEM601
|
3.4
|
91.6
|
1.0
|
|
CHA
|
I:HEM601
|
3.5
|
98.4
|
1.0
|
|
CD2
|
I:LEU236
|
3.8
|
84.0
|
1.0
|
|
ND1
|
I:HIS200
|
4.2
|
101.5
|
1.0
|
|
CG
|
I:HIS200
|
4.2
|
99.3
|
1.0
|
|
C2B
|
I:HEM601
|
4.2
|
95.8
|
1.0
|
|
C3A
|
I:HEM601
|
4.3
|
114.3
|
1.0
|
|
C3B
|
I:HEM601
|
4.3
|
102.5
|
1.0
|
|
C2A
|
I:HEM601
|
4.3
|
121.5
|
1.0
|
|
C2D
|
I:HEM601
|
4.3
|
95.4
|
1.0
|
|
C2C
|
I:HEM601
|
4.3
|
89.9
|
1.0
|
|
C3C
|
I:HEM601
|
4.3
|
92.3
|
1.0
|
|
C3D
|
I:HEM601
|
4.3
|
89.3
|
1.0
|
|
CD1
|
I:ILE238
|
4.5
|
99.6
|
1.0
|
|
CE
|
I:MET192
|
4.8
|
100.7
|
1.0
|
|
CD1
|
I:ILE215
|
5.0
|
118.7
|
1.0
|
|
Iron binding site 10 out
of 10 in 8js5
Go back to
Iron Binding Sites List in 8js5
Iron binding site 10 out
of 10 in the Dimeric Pas Domains of Oxygen Sensor Fixl with Ferric Unliganded Heme
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 10 of Dimeric Pas Domains of Oxygen Sensor Fixl with Ferric Unliganded Heme within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
J:Fe302
b:100.1
occ:1.00
|
FE
|
J:HEM302
|
0.0
|
100.1
|
1.0
|
|
NA
|
J:HEM302
|
2.0
|
116.1
|
1.0
|
|
NE2
|
J:HIS200
|
2.1
|
91.9
|
1.0
|
|
ND
|
J:HEM302
|
2.1
|
102.4
|
1.0
|
|
NC
|
J:HEM302
|
2.1
|
104.1
|
1.0
|
|
NB
|
J:HEM302
|
2.1
|
109.7
|
1.0
|
|
C4A
|
J:HEM302
|
3.0
|
118.8
|
1.0
|
|
C1B
|
J:HEM302
|
3.0
|
104.5
|
1.0
|
|
CE1
|
J:HIS200
|
3.0
|
95.7
|
1.0
|
|
CD2
|
J:HIS200
|
3.0
|
100.6
|
1.0
|
|
C1D
|
J:HEM302
|
3.1
|
100.6
|
1.0
|
|
C1A
|
J:HEM302
|
3.1
|
100.9
|
1.0
|
|
C4D
|
J:HEM302
|
3.1
|
91.6
|
1.0
|
|
C4C
|
J:HEM302
|
3.1
|
96.8
|
1.0
|
|
C1C
|
J:HEM302
|
3.1
|
95.0
|
1.0
|
|
C4B
|
J:HEM302
|
3.1
|
104.7
|
1.0
|
|
CHB
|
J:HEM302
|
3.4
|
119.6
|
1.0
|
|
CHD
|
J:HEM302
|
3.4
|
95.4
|
1.0
|
|
CHA
|
J:HEM302
|
3.5
|
98.5
|
1.0
|
|
CHC
|
J:HEM302
|
3.5
|
86.7
|
1.0
|
|
CD2
|
J:LEU236
|
4.0
|
86.7
|
1.0
|
|
ND1
|
J:HIS200
|
4.1
|
92.2
|
1.0
|
|
CG
|
J:HIS200
|
4.2
|
94.7
|
1.0
|
|
C2B
|
J:HEM302
|
4.2
|
105.1
|
1.0
|
|
C3A
|
J:HEM302
|
4.3
|
107.3
|
1.0
|
|
C3B
|
J:HEM302
|
4.3
|
113.2
|
1.0
|
|
C2A
|
J:HEM302
|
4.3
|
108.0
|
1.0
|
|
C2D
|
J:HEM302
|
4.3
|
89.7
|
1.0
|
|
C3D
|
J:HEM302
|
4.3
|
88.0
|
1.0
|
|
C2C
|
J:HEM302
|
4.3
|
96.5
|
1.0
|
|
C3C
|
J:HEM302
|
4.3
|
97.4
|
1.0
|
|
CD1
|
J:ILE238
|
4.5
|
89.6
|
1.0
|
|
CE
|
J:MET192
|
4.8
|
108.4
|
1.0
|
|
CD1
|
J:ILE215
|
4.9
|
110.3
|
1.0
|
|
Reference:
H.Koteishi,
H.Sugimoto.
Dimeric Pas Domains of Oxygen Sensor Fixl in Complex with Imidazole-Bound Heme. To Be Published.
Page generated: Sat Aug 10 07:23:03 2024
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