Iron in PDB 8jzf: Psi-Acppci Supercomplex From Symbiodinium

The structure of Psi-Acppci Supercomplex From Symbiodinium also contains other interesting chemical elements:

Magnesium

(Mg)

208 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Iron atom in the Psi-Acppci Supercomplex From Symbiodinium (pdb code 8jzf). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 12 binding sites of Iron where determined in the Psi-Acppci Supercomplex From Symbiodinium, PDB code: 8jzf:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 12 in the Psi-Acppci Supercomplex From Symbiodinium


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Psi-Acppci Supercomplex From Symbiodinium within 5.0Å range: probe atom residue distance (Å) B Occ c:Fe201 b:80.0 occ:1.00 FE1 c:SF4201 0.0 80.0 1.0 SG c:CYS133 2.3 76.0 1.0 S4 c:SF4201 2.3 80.0 1.0 S2 c:SF4201 2.3 80.0 1.0 S3 c:SF4201 2.3 80.0 1.0 FE2 c:SF4201 2.7 80.0 1.0 FE3 c:SF4201 2.7 80.0 1.0 FE4 c:SF4201 2.7 80.0 1.0 N c:CYS133 3.4 76.0 1.0 N c:LYS134 3.5 74.6 1.0 CB c:CYS133 3.7 76.0 1.0 CD c:PRO104 3.8 76.7 1.0 S1 c:SF4201 3.9 80.0 1.0 CA c:CYS133 3.9 76.0 1.0 C c:CYS133 4.1 76.0 1.0 N c:ARG135 4.2 74.1 1.0 C c:GLY132 4.3 75.2 1.0 N c:GLY132 4.4 75.2 1.0 CG2 c:VAL131 4.4 77.4 1.0 CA c:LYS134 4.4 74.6 1.0 CG c:PRO104 4.5 76.7 1.0 CA c:GLY132 4.6 75.2 1.0 SG c:CYS136 4.7 75.5 1.0 SG c:CYS130 4.7 77.7 1.0 SG c:CYS103 4.7 76.2 1.0 C c:LYS134 4.8 74.6 1.0 N c:CYS136 4.9 75.5 1.0 CB c:ARG135 4.9 74.1 1.0

Iron binding site 2 out of 12 in the Psi-Acppci Supercomplex From Symbiodinium


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Psi-Acppci Supercomplex From Symbiodinium within 5.0Å range: probe atom residue distance (Å) B Occ c:Fe201 b:80.0 occ:1.00 FE2 c:SF4201 0.0 80.0 1.0 SG c:CYS103 2.3 76.2 1.0 S1 c:SF4201 2.3 80.0 1.0 S3 c:SF4201 2.3 80.0 1.0 S4 c:SF4201 2.3 80.0 1.0 FE1 c:SF4201 2.7 80.0 1.0 FE4 c:SF4201 2.7 80.0 1.0 FE3 c:SF4201 2.7 80.0 1.0 CB c:CYS103 3.1 76.2 1.0 CA c:CYS103 3.6 76.2 1.0 CD c:PRO104 3.8 76.7 1.0 S2 c:SF4201 3.9 80.0 1.0 CB c:VAL107 4.1 76.3 1.0 CG2 c:VAL107 4.3 76.3 1.0 C c:CYS103 4.4 76.2 1.0 N c:PRO104 4.4 76.7 1.0 OG1 c:THR105 4.5 78.0 1.0 CD1 c:LEU108 4.6 76.1 1.0 SG c:CYS133 4.6 76.0 1.0 SG c:CYS136 4.7 75.5 1.0 CG c:LEU108 4.8 76.1 1.0 N c:CYS103 4.8 76.2 1.0 CG1 c:VAL107 4.9 76.3 1.0 SG c:CYS130 4.9 77.7 1.0 CB c:CYS136 5.0 75.5 1.0 CG c:PRO104 5.0 76.7 1.0 N c:VAL107 5.0 76.3 1.0

Iron binding site 3 out of 12 in the Psi-Acppci Supercomplex From Symbiodinium


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Psi-Acppci Supercomplex From Symbiodinium within 5.0Å range: probe atom residue distance (Å) B Occ c:Fe201 b:80.0 occ:1.00 FE3 c:SF4201 0.0 80.0 1.0 SG c:CYS136 2.3 75.5 1.0 S4 c:SF4201 2.3 80.0 1.0 S2 c:SF4201 2.3 80.0 1.0 S1 c:SF4201 2.3 80.0 1.0 FE2 c:SF4201 2.7 80.0 1.0 FE4 c:SF4201 2.7 80.0 1.0 FE1 c:SF4201 2.7 80.0 1.0 CB c:CYS136 3.3 75.5 1.0 S3 c:SF4201 3.9 80.0 1.0 N c:CYS136 3.9 75.5 1.0 CG2 c:VAL149 3.9 74.0 1.0 CA c:CYS136 4.2 75.5 1.0 N c:LYS134 4.4 74.6 1.0 CA c:LYS134 4.4 74.6 1.0 N c:ARG135 4.6 74.1 1.0 SG c:CYS130 4.6 77.7 1.0 CD1 c:LEU108 4.6 76.1 1.0 SG c:CYS133 4.7 76.0 1.0 C c:LYS134 4.8 74.6 1.0 SG c:CYS103 4.9 76.2 1.0 CD1 c:ILE147 4.9 74.1 1.0

Iron binding site 4 out of 12 in the Psi-Acppci Supercomplex From Symbiodinium


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Psi-Acppci Supercomplex From Symbiodinium within 5.0Å range: probe atom residue distance (Å) B Occ c:Fe201 b:80.0 occ:1.00 FE4 c:SF4201 0.0 80.0 1.0 SG c:CYS130 2.3 77.7 1.0 S2 c:SF4201 2.3 80.0 1.0 S3 c:SF4201 2.3 80.0 1.0 S1 c:SF4201 2.3 80.0 1.0 FE2 c:SF4201 2.7 80.0 1.0 FE3 c:SF4201 2.7 80.0 1.0 FE1 c:SF4201 2.7 80.0 1.0 CB c:CYS130 3.3 77.7 1.0 CA c:CYS130 3.6 77.7 1.0 S4 c:SF4201 3.9 80.0 1.0 N c:GLY132 4.0 75.2 1.0 C c:CYS130 4.2 77.7 1.0 N c:VAL131 4.2 77.4 1.0 CA c:GLY132 4.4 75.2 1.0 CG2 c:VAL87 4.4 75.1 1.0 CG2 c:VAL107 4.5 76.3 1.0 SG c:CYS103 4.7 76.2 1.0 CB c:VAL107 4.7 76.3 1.0 N c:CYS133 4.7 76.0 1.0 CG2 c:VAL149 4.8 74.0 1.0 CG1 c:VAL107 4.8 76.3 1.0 SG c:CYS136 4.9 75.5 1.0 SG c:CYS133 4.9 76.0 1.0 C c:GLY132 4.9 75.2 1.0 N c:CYS130 5.0 77.7 1.0 O c:CYS130 5.0 77.7 1.0

Iron binding site 5 out of 12 in the Psi-Acppci Supercomplex From Symbiodinium


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Psi-Acppci Supercomplex From Symbiodinium within 5.0Å range: probe atom residue distance (Å) B Occ c:Fe202 b:82.6 occ:1.00 FE1 c:SF4202 0.0 82.6 1.0 SG c:CYS140 2.3 76.9 1.0 S2 c:SF4202 2.3 82.6 1.0 S3 c:SF4202 2.3 82.6 1.0 S4 c:SF4202 2.3 82.6 1.0 FE3 c:SF4202 2.7 82.6 1.0 FE2 c:SF4202 2.7 82.6 1.0 FE4 c:SF4202 2.7 82.6 1.0 CB c:CYS140 3.3 76.9 1.0 CA c:CYS140 3.7 76.9 1.0 S1 c:SF4202 3.9 82.6 1.0 CG2 c:ILE147 4.0 74.1 1.0 CD c:PRO141 4.2 75.7 1.0 CB c:SER146 4.2 75.3 1.0 SG c:CYS96 4.4 80.7 1.0 CB c:CYS99 4.6 77.1 1.0 C c:CYS140 4.6 76.9 1.0 SG c:CYS99 4.7 77.1 1.0 OG c:SER146 4.7 75.3 1.0 N c:PRO141 4.7 75.7 1.0 N c:SER146 4.7 75.3 1.0 N c:ILE147 4.7 74.1 1.0 OG1 c:THR142 4.8 77.0 1.0 N c:CYS140 4.8 76.9 1.0 CA c:SER146 4.9 75.3 1.0 SG c:CYS93 4.9 75.7 1.0 CB c:ILE147 4.9 74.1 1.0

Iron binding site 6 out of 12 in the Psi-Acppci Supercomplex From Symbiodinium


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Psi-Acppci Supercomplex From Symbiodinium within 5.0Å range: probe atom residue distance (Å) B Occ c:Fe202 b:82.6 occ:1.00 FE2 c:SF4202 0.0 82.6 1.0 SG c:CYS99 2.3 77.1 1.0 S4 c:SF4202 2.3 82.6 1.0 S3 c:SF4202 2.3 82.6 1.0 S1 c:SF4202 2.3 82.6 1.0 FE4 c:SF4202 2.7 82.6 1.0 FE1 c:SF4202 2.7 82.6 1.0 FE3 c:SF4202 2.7 82.6 1.0 CB c:CYS99 2.9 77.1 1.0 N c:CYS99 3.7 77.1 1.0 S2 c:SF4202 3.9 82.6 1.0 CA c:CYS99 3.9 77.1 1.0 CB c:ALA122 4.2 75.7 1.0 CE c:MET110 4.4 79.6 1.0 N c:THR97 4.5 77.9 1.0 SG c:CYS93 4.6 75.7 1.0 CB c:CYS96 4.6 80.7 1.0 N c:LEU98 4.7 75.6 1.0 CG2 c:ILE147 4.7 74.1 1.0 N c:VAL100 4.8 75.7 1.0 N c:CYS96 4.8 80.7 1.0 SG c:CYS140 4.9 76.9 1.0 C c:CYS99 4.9 77.1 1.0 C c:LEU98 4.9 75.6 1.0 CA c:THR97 5.0 77.9 1.0 SG c:CYS96 5.0 80.7 1.0

Iron binding site 7 out of 12 in the Psi-Acppci Supercomplex From Symbiodinium


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Psi-Acppci Supercomplex From Symbiodinium within 5.0Å range: probe atom residue distance (Å) B Occ c:Fe202 b:82.6 occ:1.00 FE3 c:SF4202 0.0 82.6 1.0 SG c:CYS96 2.3 80.7 1.0 S1 c:SF4202 2.3 82.6 1.0 S2 c:SF4202 2.3 82.6 1.0 S4 c:SF4202 2.3 82.6 1.0 CB c:CYS96 2.4 80.7 1.0 FE1 c:SF4202 2.7 82.6 1.0 FE4 c:SF4202 2.7 82.6 1.0 FE2 c:SF4202 2.7 82.6 1.0 N c:CYS96 3.1 80.7 1.0 CA c:CYS96 3.3 80.7 1.0 S3 c:SF4202 3.9 82.6 1.0 CD c:PRO141 4.0 75.7 1.0 N c:THR97 4.0 77.9 1.0 C c:CYS96 4.1 80.7 1.0 C c:GLY95 4.4 78.2 1.0 N c:LEU98 4.6 75.6 1.0 N c:GLY95 4.6 78.2 1.0 SG c:CYS140 4.6 76.9 1.0 SG c:CYS93 4.7 75.7 1.0 CG1 c:ILE94 4.7 77.5 1.0 CG c:PRO141 4.8 75.7 1.0 CA c:GLY95 4.9 78.2 1.0 N c:CYS99 4.9 77.1 1.0 SG c:CYS99 4.9 77.1 1.0 N c:ILE94 4.9 77.5 1.0

Iron binding site 8 out of 12 in the Psi-Acppci Supercomplex From Symbiodinium


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Psi-Acppci Supercomplex From Symbiodinium within 5.0Å range: probe atom residue distance (Å) B Occ c:Fe202 b:82.6 occ:1.00 FE4 c:SF4202 0.0 82.6 1.0 SG c:CYS93 2.3 75.7 1.0 S1 c:SF4202 2.3 82.6 1.0 S2 c:SF4202 2.3 82.6 1.0 S3 c:SF4202 2.3 82.6 1.0 FE2 c:SF4202 2.7 82.6 1.0 FE3 c:SF4202 2.7 82.6 1.0 FE1 c:SF4202 2.7 82.6 1.0 CB c:CYS93 3.2 75.7 1.0 CA c:CYS93 3.6 75.7 1.0 N c:ILE94 3.9 77.5 1.0 S4 c:SF4202 3.9 82.6 1.0 N c:GLY95 4.1 78.2 1.0 C c:CYS93 4.2 75.7 1.0 N c:CYS96 4.3 80.7 1.0 CB c:SER146 4.4 75.3 1.0 SG c:CYS96 4.5 80.7 1.0 CB c:ALA122 4.5 75.7 1.0 CA c:GLY95 4.6 78.2 1.0 SG c:CYS99 4.7 77.1 1.0 SG c:CYS140 4.7 76.9 1.0 N c:ALA122 4.8 75.7 1.0 OG c:SER146 4.9 75.3 1.0 C c:ILE94 4.9 77.5 1.0 CB c:CYS96 4.9 80.7 1.0 N c:CYS93 4.9 75.7 1.0 CA c:ILE94 5.0 77.5 1.0

Iron binding site 9 out of 12 in the Psi-Acppci Supercomplex From Symbiodinium


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Psi-Acppci Supercomplex From Symbiodinium within 5.0Å range: probe atom residue distance (Å) B Occ a:Fe737 b:77.5 occ:1.00 FE1 a:SF4737 0.0 77.5 1.0 SG a:CYS494 2.3 77.0 1.0 S3 a:SF4737 2.3 77.5 1.0 S2 a:SF4737 2.3 77.5 1.0 S4 a:SF4737 2.3 77.5 1.0 FE4 a:SF4737 2.7 77.5 1.0 FE2 a:SF4737 2.7 77.5 1.0 FE3 a:SF4737 2.7 77.5 1.0 CB a:CYS494 3.0 77.0 1.0 S1 a:SF4737 3.9 77.5 1.0 CA a:CYS494 4.4 77.0 1.0 SG a:CYS503 4.6 73.2 1.0 SG b:CYS529 4.6 77.2 1.0 CB a:CYS503 4.6 73.2 1.0 N b:PRO532 4.6 73.9 1.0 CB b:PRO532 4.6 73.9 1.0 CA a:CYS503 4.6 73.2 1.0 N a:CYS494 4.7 77.0 1.0 N a:GLY496 4.7 74.4 1.0 CD b:PRO532 4.7 73.9 1.0 SG b:CYS538 4.7 75.0 1.0 CA a:GLY496 4.8 74.4 1.0 CA b:PRO532 4.8 73.9 1.0 C a:GLY496 4.8 74.4 1.0 CD1 a:ILE641 4.9 71.8 1.0 C a:PRO493 4.9 76.0 1.0 C b:GLY531 4.9 75.1 1.0

Iron binding site 10 out of 12 in the Psi-Acppci Supercomplex From Symbiodinium


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Psi-Acppci Supercomplex From Symbiodinium within 5.0Å range: probe atom residue distance (Å) B Occ a:Fe737 b:77.5 occ:1.00 FE2 a:SF4737 0.0 77.5 1.0 SG b:CYS538 2.3 75.0 1.0 S1 a:SF4737 2.3 77.5 1.0 S3 a:SF4737 2.3 77.5 1.0 S4 a:SF4737 2.3 77.5 1.0 FE4 a:SF4737 2.7 77.5 1.0 FE1 a:SF4737 2.7 77.5 1.0 FE3 a:SF4737 2.7 77.5 1.0 CB b:CYS538 3.3 75.0 1.0 CA b:CYS538 3.8 75.0 1.0 S2 a:SF4737 3.9 77.5 1.0 CZ3 b:TRP632 4.0 70.9 1.0 N b:CYS538 4.1 75.0 1.0 CD1 a:ILE641 4.2 71.8 1.0 CE3 b:TRP632 4.5 70.9 1.0 CB b:CYS529 4.6 77.2 1.0 SG b:CYS529 4.7 77.2 1.0 NH2 a:ARG645 4.8 71.9 1.0 CG2 a:ILE641 4.8 71.8 1.0 C b:THR537 4.8 74.5 1.0 SG a:CYS494 4.9 77.0 1.0 CH2 b:TRP632 4.9 70.9 1.0 SG a:CYS503 4.9 73.2 1.0

X.Li, Z.Li, F.Wang, S.Zhao, C.Xu, Z.Mao, J.Duan, Y.Feng, Y.Yang, L.Shen, G.Wang, Y.Yang, L.J.Yu, M.Sang, G.Han, X.Wang, T.Kuang, J.R.Shen, W.Wang. Structures and Organizations of Psi-Acppci Supercomplexes From Red Tidal and Coral Symbiotic Photosynthetic Dinoflagellates. Proc.Natl.Acad.Sci.Usa V. 121 76121 2024.
ISSN: ESSN 1091-6490
PubMed: 38319970
DOI: 10.1073/PNAS.2315476121