Iron in PDB 8k0m: Human Collagen Prolyl Processing Enzyme Complex, P3H1/Crtap/Ppib Heterotrimer, Bound to 2-Oxoglutarate

All present enzymatic activity of Human Collagen Prolyl Processing Enzyme Complex, P3H1/Crtap/Ppib Heterotrimer, Bound to 2-Oxoglutarate:
1.14.11.7; 5.2.1.8;

The binding sites of Iron atom in the Human Collagen Prolyl Processing Enzyme Complex, P3H1/Crtap/Ppib Heterotrimer, Bound to 2-Oxoglutarate (pdb code 8k0m). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Human Collagen Prolyl Processing Enzyme Complex, P3H1/Crtap/Ppib Heterotrimer, Bound to 2-Oxoglutarate, PDB code: 8k0m:

Iron binding site 1 out of 1 in the Human Collagen Prolyl Processing Enzyme Complex, P3H1/Crtap/Ppib Heterotrimer, Bound to 2-Oxoglutarate


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Human Collagen Prolyl Processing Enzyme Complex, P3H1/Crtap/Ppib Heterotrimer, Bound to 2-Oxoglutarate within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe803 b:73.8 occ:1.00 O5 A:AKG804 2.0 62.6 1.0 OD1 A:ASP589 2.1 62.8 1.0 NE2 A:HIS659 2.1 50.8 1.0 CE1 A:HIS659 2.5 50.5 1.0 O2 A:AKG804 2.5 64.5 1.0 NE2 A:HIS587 2.5 54.6 1.0 CG A:ASP589 2.7 58.1 1.0 OD2 A:ASP589 2.7 58.6 1.0 C2 A:AKG804 2.9 64.3 1.0 C1 A:AKG804 3.1 65.9 1.0 CD2 A:HIS587 3.2 56.6 1.0 CD2 A:HIS659 3.4 48.6 1.0 CE1 A:HIS587 3.6 62.0 1.0 ND1 A:HIS659 3.7 45.6 1.0 CB A:ASP589 4.1 53.6 1.0 CG A:HIS659 4.2 48.9 1.0 C3 A:AKG804 4.3 60.4 1.0 O1 A:AKG804 4.3 60.1 1.0 CG A:HIS587 4.4 57.6 1.0 N A:ASP589 4.5 49.9 1.0 CA A:ASP589 4.6 48.9 1.0 NE1 A:TRP675 4.6 52.7 1.0 ND1 A:HIS587 4.6 65.2 1.0 C4 A:AKG804 4.7 59.6 1.0

W.Li, J.Peng, D.Yao, B.Rao, Y.Xia, Q.Wang, S.Li, M.Cao, Y.Shen, P.Ma, R.Liao, A.Qin, J.Zhao, Y.Cao. The Structural Basis For the Collagen Processing By Human P3H1/Crtap/Ppib Ternary Complex. Nat Commun V. 15 7844 2024.
ISSN: ESSN 2041-1723
PubMed: 39245686
DOI: 10.1038/S41467-024-52321-6