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Iron in PDB 8k65: Serial Femtosecond Crystallography Structure of Co Bound BA3- Type Cytochrome C Oxidase Without Pump Laser Irradiation

Enzymatic activity of Serial Femtosecond Crystallography Structure of Co Bound BA3- Type Cytochrome C Oxidase Without Pump Laser Irradiation

All present enzymatic activity of Serial Femtosecond Crystallography Structure of Co Bound BA3- Type Cytochrome C Oxidase Without Pump Laser Irradiation:
7.1.1.9;

Protein crystallography data

The structure of Serial Femtosecond Crystallography Structure of Co Bound BA3- Type Cytochrome C Oxidase Without Pump Laser Irradiation, PDB code: 8k65 was solved by C.Safari, S.Ghosh, R.Andersson, J.Johannesson, A.V.Donoso, P.Bath, D.Zoric, E.Sandelin, E.Nango, R.Tanaka, S.Iwata, R.Neutze, G.Branden, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 37.20 / 2.00
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 145.85, 100.32, 96.62, 90, 126.76, 90
R / Rfree (%) 17 / 19.6

Other elements in 8k65:

The structure of Serial Femtosecond Crystallography Structure of Co Bound BA3- Type Cytochrome C Oxidase Without Pump Laser Irradiation also contains other interesting chemical elements:

Copper (Cu) 3 atoms

Iron Binding Sites:

The binding sites of Iron atom in the Serial Femtosecond Crystallography Structure of Co Bound BA3- Type Cytochrome C Oxidase Without Pump Laser Irradiation (pdb code 8k65). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Serial Femtosecond Crystallography Structure of Co Bound BA3- Type Cytochrome C Oxidase Without Pump Laser Irradiation, PDB code: 8k65:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 8k65

Go back to Iron Binding Sites List in 8k65
Iron binding site 1 out of 2 in the Serial Femtosecond Crystallography Structure of Co Bound BA3- Type Cytochrome C Oxidase Without Pump Laser Irradiation


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Serial Femtosecond Crystallography Structure of Co Bound BA3- Type Cytochrome C Oxidase Without Pump Laser Irradiation within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe602

b:25.5
occ:1.00
FE A:HEM602 0.0 25.5 1.0
ND A:HEM602 1.9 22.0 1.0
NA A:HEM602 2.0 22.1 1.0
NC A:HEM602 2.1 20.2 1.0
NE2 A:HIS386 2.1 24.8 1.0
NB A:HEM602 2.1 22.1 1.0
NE2 A:HIS72 2.1 23.1 1.0
CE1 A:HIS386 2.9 24.8 1.0
C1D A:HEM602 3.0 22.6 1.0
C4D A:HEM602 3.0 22.2 1.0
C1A A:HEM602 3.0 21.2 1.0
C4C A:HEM602 3.0 25.2 1.0
C4B A:HEM602 3.0 21.8 1.0
C4A A:HEM602 3.1 23.1 1.0
CE1 A:HIS72 3.1 24.6 1.0
C1C A:HEM602 3.1 24.9 1.0
C1B A:HEM602 3.1 26.2 1.0
CD2 A:HIS386 3.1 20.8 1.0
CD2 A:HIS72 3.1 23.6 1.0
CHD A:HEM602 3.4 22.2 1.0
CHA A:HEM602 3.4 20.8 1.0
CHC A:HEM602 3.4 22.3 1.0
CHB A:HEM602 3.5 23.2 1.0
ND1 A:HIS386 4.1 21.0 1.0
CG A:HIS386 4.2 21.1 1.0
C2D A:HEM602 4.2 24.9 1.0
C2A A:HEM602 4.2 21.4 1.0
C3D A:HEM602 4.2 21.3 1.0
C3A A:HEM602 4.2 22.0 1.0
ND1 A:HIS72 4.2 22.6 1.0
C3C A:HEM602 4.3 23.1 1.0
CG A:HIS72 4.3 21.5 1.0
C2C A:HEM602 4.3 25.0 1.0
C3B A:HEM602 4.3 25.4 1.0
C2B A:HEM602 4.3 23.4 1.0
OE1 A:GLN42 4.6 28.0 1.0

Iron binding site 2 out of 2 in 8k65

Go back to Iron Binding Sites List in 8k65
Iron binding site 2 out of 2 in the Serial Femtosecond Crystallography Structure of Co Bound BA3- Type Cytochrome C Oxidase Without Pump Laser Irradiation


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Serial Femtosecond Crystallography Structure of Co Bound BA3- Type Cytochrome C Oxidase Without Pump Laser Irradiation within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe603

b:30.4
occ:1.00
FE A:HAS603 0.0 30.4 1.0
C A:CMO614 1.9 20.9 1.0
ND A:HAS603 2.1 27.0 1.0
NA A:HAS603 2.1 25.6 1.0
NC A:HAS603 2.1 27.8 1.0
NB A:HAS603 2.1 29.8 1.0
NE2 A:HIS384 2.2 25.3 1.0
O A:CMO614 3.0 26.8 1.0
C1D A:HAS603 3.1 24.1 1.0
C1B A:HAS603 3.1 25.5 1.0
C4D A:HAS603 3.1 24.8 1.0
C1C A:HAS603 3.1 26.1 1.0
C4A A:HAS603 3.1 23.6 1.0
C4C A:HAS603 3.1 21.8 1.0
C4B A:HAS603 3.1 26.5 1.0
C1A A:HAS603 3.1 23.7 1.0
CE1 A:HIS384 3.2 29.5 1.0
CD2 A:HIS384 3.3 26.7 1.0
CHB A:HAS603 3.4 23.5 1.0
CHA A:HAS603 3.4 22.6 1.0
CHC A:HAS603 3.4 25.4 1.0
CHD A:HAS603 3.5 21.6 1.0
C2D A:HAS603 4.3 22.7 1.0
ND1 A:HIS384 4.4 27.9 1.0
C2B A:HAS603 4.4 24.6 1.0
C3D A:HAS603 4.4 22.4 1.0
C3C A:HAS603 4.4 22.7 1.0
C3B A:HAS603 4.4 26.8 1.0
C2A A:HAS603 4.4 21.0 1.0
C2C A:HAS603 4.4 26.3 1.0
C3A A:HAS603 4.4 21.2 1.0
CG A:HIS384 4.4 25.8 1.0
CU A:CU601 4.9 29.0 1.0

Reference:

C.Safari, S.Ghosh, R.Andersson, J.Johannesson, A.V.Donoso, P.Bath, D.Zoric, E.Sandelin, E.Nango, R.Tanaka, S.Iwata, R.Neutze, G.Branden. Serial Femtosecond Crystallography Structure of Co Bound BA3- Type Cytochrome C Oxidase Without Pump Laser Irradiation To Be Published.
Page generated: Sat Aug 10 07:26:01 2024

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