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Iron in PDB 8ogg: Crystal Structure of Futa After An Accumulated Dose of 5 Kgy

Protein crystallography data

The structure of Crystal Structure of Futa After An Accumulated Dose of 5 Kgy, PDB code: 8ogg was solved by R.Bolton, I.Tews, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.97 / 1.76
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 39.718, 78.66, 48.382, 90, 97.79, 90
R / Rfree (%) 20.2 / 24.1

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of Futa After An Accumulated Dose of 5 Kgy (pdb code 8ogg). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Crystal Structure of Futa After An Accumulated Dose of 5 Kgy, PDB code: 8ogg:

Iron binding site 1 out of 1 in 8ogg

Go back to Iron Binding Sites List in 8ogg
Iron binding site 1 out of 1 in the Crystal Structure of Futa After An Accumulated Dose of 5 Kgy


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of Futa After An Accumulated Dose of 5 Kgy within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe401

b:25.2
occ:1.00
OH A:TYR13 1.8 26.2 1.0
OH A:TYR200 1.9 25.2 1.0
OH A:TYR199 1.9 20.0 1.0
OH A:TYR143 2.0 25.2 1.0
O A:HOH541 2.3 26.1 1.0
CZ A:TYR13 2.9 27.1 1.0
CZ A:TYR200 2.9 23.2 1.0
CZ A:TYR143 3.0 24.8 1.0
CZ A:TYR199 3.0 19.5 1.0
CE1 A:TYR13 3.3 27.9 1.0
CE1 A:TYR199 3.4 20.5 1.0
CE2 A:TYR143 3.4 23.4 1.0
CE2 A:TYR200 3.6 24.2 1.0
O A:HOH509 3.8 39.2 1.0
CE1 A:TYR200 3.9 22.6 1.0
NH1 A:ARG103 4.0 21.3 1.0
NH2 A:ARG103 4.1 21.2 1.0
CE2 A:TYR13 4.1 29.6 1.0
CE1 A:TYR143 4.1 23.4 1.0
CE2 A:TYR199 4.2 19.7 1.0
O A:HOH546 4.2 28.8 1.0
ND2 A:ASN197 4.4 23.7 1.0
CZ A:ARG103 4.5 21.9 1.0
CD2 A:TYR143 4.7 24.7 1.0
CD1 A:TYR13 4.7 31.0 1.0
CD1 A:TYR199 4.8 21.2 1.0
CG1 A:VAL60 4.8 23.4 1.0
CD2 A:TYR200 4.9 22.8 1.0

Reference:

R.Bolton, I.Tews. A Redox Switch Allows Binding of Ferrous and Ferric Ions in the Cyanobacterial Iron Binding Protein Futa From Prochlorococcus Biorxiv 2023.
ISSN: ISSN 2692-8205
DOI: 10.1101/2023.05.23.541926V1
Page generated: Thu Dec 28 06:07:51 2023

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