Iron in PDB 8oh5: Cryo-Em Structure of the Electron Bifurcating Transhydrogenase Stnabc Complex From Sporomusa Ovata (State 2)

The structure of Cryo-Em Structure of the Electron Bifurcating Transhydrogenase Stnabc Complex From Sporomusa Ovata (State 2) also contains other interesting chemical elements:

Zinc

(Zn)

4 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 50; Page 6, Binding sites: 51 - 60; Page 7, Binding sites: 61 - 70; Page 8, Binding sites: 71 - 80; Page 9, Binding sites: 81 - 90; Page 10, Binding sites: 91 - 100; Page 11, Binding sites: 101 - 110; Page 12, Binding sites: 111 - 120; Page 13, Binding sites: 121 - 130; Page 14, Binding sites: 131 - 140; Page 15, Binding sites: 141 - 150; Page 16, Binding sites: 151 - 160; Page 17, Binding sites: 161 - 168;

Binding sites:

The binding sites of Iron atom in the Cryo-Em Structure of the Electron Bifurcating Transhydrogenase Stnabc Complex From Sporomusa Ovata (State 2) (pdb code 8oh5). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 168 binding sites of Iron where determined in the Cryo-Em Structure of the Electron Bifurcating Transhydrogenase Stnabc Complex From Sporomusa Ovata (State 2), PDB code: 8oh5:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 168 in the Cryo-Em Structure of the Electron Bifurcating Transhydrogenase Stnabc Complex From Sporomusa Ovata (State 2)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Cryo-Em Structure of the Electron Bifurcating Transhydrogenase Stnabc Complex From Sporomusa Ovata (State 2) within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe201 b:77.4 occ:1.00 FE1 A:FES201 0.0 77.4 1.0 S1 A:FES201 2.2 64.9 1.0 S2 A:FES201 2.2 72.6 1.0 SG A:CYS98 2.3 41.5 1.0 SG A:CYS93 2.3 39.2 1.0 FE2 A:FES201 2.7 79.1 1.0 CB A:CYS93 3.5 34.2 1.0 CB A:CYS98 3.7 36.0 1.0 SG A:CYS138 3.9 49.7 1.0 SG A:CYS134 4.1 44.0 1.0 N A:CYS98 4.1 31.6 1.0 CA A:CYS138 4.4 40.6 1.0 CA A:CYS98 4.5 35.3 1.0 N A:GLY95 4.5 34.0 1.0 CG2 A:VAL143 4.5 37.9 1.0 N A:LEU135 4.6 38.9 1.0 CA A:GLY95 4.7 33.5 1.0 O A:CYS93 4.7 39.3 1.0 CB A:CYS138 4.7 41.6 1.0 CA A:CYS93 4.7 32.7 1.0 C A:CYS93 4.7 32.9 1.0 N A:CYS138 4.8 41.3 1.0 N A:GLY136 4.9 37.5 1.0 CB A:ALA97 4.9 33.2 1.0 CB A:ALA141 4.9 29.3 1.0 C A:CYS137 5.0 46.9 1.0

Iron binding site 2 out of 168 in the Cryo-Em Structure of the Electron Bifurcating Transhydrogenase Stnabc Complex From Sporomusa Ovata (State 2)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Cryo-Em Structure of the Electron Bifurcating Transhydrogenase Stnabc Complex From Sporomusa Ovata (State 2) within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe201 b:79.1 occ:1.00 FE2 A:FES201 0.0 79.1 1.0 S1 A:FES201 2.2 64.9 1.0 S2 A:FES201 2.2 72.6 1.0 SG A:CYS134 2.3 44.0 1.0 SG A:CYS138 2.3 49.7 1.0 FE1 A:FES201 2.7 77.4 1.0 N A:GLY136 3.0 37.5 1.0 CA A:GLY136 3.3 36.9 1.0 SG A:CYS93 3.6 39.2 1.0 C A:GLY136 3.6 39.0 1.0 CB A:CYS138 3.7 41.6 1.0 N A:CYS138 3.8 41.3 1.0 N A:CYS137 3.8 45.8 1.0 CA A:CYS138 3.9 40.6 1.0 N A:LEU135 3.9 38.9 1.0 CB A:CYS134 3.9 36.7 1.0 C A:LEU135 4.2 40.2 1.0 O A:GLY136 4.2 41.2 1.0 C A:CYS137 4.4 46.9 1.0 CA A:CYS134 4.4 38.2 1.0 C A:CYS134 4.5 35.9 1.0 CA A:LEU135 4.6 40.8 1.0 CA A:CYS137 4.7 47.5 1.0 CA B:GLY188 4.8 32.7 1.0 N B:GLY188 4.8 32.5 1.0 SG A:CYS98 4.9 41.5 1.0

Iron binding site 3 out of 168 in the Cryo-Em Structure of the Electron Bifurcating Transhydrogenase Stnabc Complex From Sporomusa Ovata (State 2)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Cryo-Em Structure of the Electron Bifurcating Transhydrogenase Stnabc Complex From Sporomusa Ovata (State 2) within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe602 b:98.0 occ:1.00 FE1 B:FES602 0.0 98.0 1.0 CB B:CYS10 1.3 47.0 1.0 S1 B:FES602 2.2 92.3 1.0 S2 B:FES602 2.2 96.0 1.0 SG B:CYS10 2.3 51.9 1.0 FE2 B:FES602 2.7 98.1 1.0 CA B:CYS10 2.8 42.9 1.0 SG B:CYS45 2.8 56.3 1.0 N B:CYS10 3.3 40.7 1.0 C B:CYS10 3.8 42.2 1.0 CB B:CYS45 4.0 43.1 1.0 N B:GLY11 4.3 36.5 1.0 O B:CYS10 4.5 39.4 1.0 C B:SER9 4.6 37.7 1.0 CB B:CYS41 4.6 41.5 1.0 CA B:CYS45 4.6 41.1 1.0 SG B:CYS41 4.7 49.4 1.0 NH2 B:ARG193 4.8 45.5 1.0 CG B:GLU48 4.9 45.7 1.0 CD B:GLU48 5.0 48.4 1.0

Iron binding site 4 out of 168 in the Cryo-Em Structure of the Electron Bifurcating Transhydrogenase Stnabc Complex From Sporomusa Ovata (State 2)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Cryo-Em Structure of the Electron Bifurcating Transhydrogenase Stnabc Complex From Sporomusa Ovata (State 2) within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe602 b:98.1 occ:1.00 FE2 B:FES602 0.0 98.1 1.0 S2 B:FES602 2.2 96.0 1.0 S1 B:FES602 2.2 92.3 1.0 CB B:CYS41 2.3 41.5 1.0 SG B:CYS41 2.3 49.4 1.0 SG B:CYS45 2.3 56.3 1.0 FE1 B:FES602 2.7 98.0 1.0 CA B:CYS41 3.8 42.0 1.0 CB B:CYS45 3.9 43.1 1.0 CB B:CYS10 4.0 47.0 1.0 CA B:CYS45 4.2 41.1 1.0 SG B:CYS10 4.4 51.9 1.0 N B:CYS41 4.5 45.0 1.0 C B:CYS41 4.6 42.4 1.0 N B:CYS45 4.7 43.4 1.0 OE1 B:GLU48 4.7 48.9 1.0 CD B:GLU48 4.9 48.4 1.0

Iron binding site 5 out of 168 in the Cryo-Em Structure of the Electron Bifurcating Transhydrogenase Stnabc Complex From Sporomusa Ovata (State 2)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Cryo-Em Structure of the Electron Bifurcating Transhydrogenase Stnabc Complex From Sporomusa Ovata (State 2) within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe604 b:104.2 occ:1.00 FE1 B:SF4604 0.0 104.2 1.0 S2 B:SF4604 2.3 92.8 1.0 S3 B:SF4604 2.3 97.5 1.0 S4 B:SF4604 2.3 103.4 1.0 FE2 B:SF4604 2.7 109.4 1.0 FE3 B:SF4604 2.7 107.4 1.0 FE4 B:SF4604 2.7 113.1 1.0 OG1 B:THR567 3.0 40.6 1.0 N B:THR567 3.0 43.8 1.0 CA B:CYS566 3.7 50.1 1.0 SG B:CYS566 3.7 55.4 1.0 C B:CYS566 3.8 50.5 1.0 CB B:THR567 3.8 41.1 1.0 CA B:THR567 3.9 42.0 1.0 S1 B:SF4604 3.9 99.8 1.0 CG2 B:THR567 4.1 39.1 1.0 SG B:CYS546 4.2 60.9 1.0 CB B:CYS566 4.3 49.2 1.0 CG2 B:VAL548 4.4 40.3 1.0 N B:LYS568 4.4 41.7 1.0 O B:LEU565 4.4 41.4 1.0 C B:THR567 4.5 41.9 1.0 CB B:VAL548 4.6 44.0 1.0 N B:CYS566 4.8 48.5 1.0 N B:CYS569 4.9 46.3 1.0 SG B:CYS569 4.9 58.5 1.0 CB B:CYS569 4.9 48.2 1.0

Iron binding site 6 out of 168 in the Cryo-Em Structure of the Electron Bifurcating Transhydrogenase Stnabc Complex From Sporomusa Ovata (State 2)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Cryo-Em Structure of the Electron Bifurcating Transhydrogenase Stnabc Complex From Sporomusa Ovata (State 2) within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe604 b:109.4 occ:1.00 FE2 B:SF4604 0.0 109.4 1.0 S4 B:SF4604 2.3 103.4 1.0 S3 B:SF4604 2.3 97.5 1.0 S1 B:SF4604 2.3 99.8 1.0 SG B:CYS546 2.4 60.9 1.0 FE3 B:SF4604 2.7 107.4 1.0 FE4 B:SF4604 2.7 113.1 1.0 FE1 B:SF4604 2.7 104.2 1.0 CB B:CYS546 3.6 49.6 1.0 CA B:CYS546 3.7 47.6 1.0 C B:CYS546 3.8 48.7 1.0 CG2 B:VAL548 3.8 40.3 1.0 S2 B:SF4604 3.9 92.8 1.0 N B:PRO547 4.0 49.3 1.0 CB B:VAL548 4.1 44.0 1.0 N B:VAL548 4.1 44.7 1.0 CD B:PRO547 4.1 44.6 1.0 O B:CYS546 4.3 48.0 1.0 SG B:CYS569 4.6 58.5 1.0 CA B:VAL548 4.7 45.3 1.0 C B:PRO547 4.7 43.7 1.0 SG B:CYS566 4.9 55.4 1.0 CA B:PRO547 5.0 47.2 1.0

Iron binding site 7 out of 168 in the Cryo-Em Structure of the Electron Bifurcating Transhydrogenase Stnabc Complex From Sporomusa Ovata (State 2)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Cryo-Em Structure of the Electron Bifurcating Transhydrogenase Stnabc Complex From Sporomusa Ovata (State 2) within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe604 b:107.4 occ:1.00 FE3 B:SF4604 0.0 107.4 1.0 SG B:CYS569 2.3 58.5 1.0 S1 B:SF4604 2.3 99.8 1.0 S2 B:SF4604 2.3 92.8 1.0 S4 B:SF4604 2.3 103.4 1.0 FE2 B:SF4604 2.7 109.4 1.0 FE1 B:SF4604 2.7 104.2 1.0 FE4 B:SF4604 2.7 113.1 1.0 CB B:CYS569 2.9 48.2 1.0 N B:CYS569 3.5 46.3 1.0 CA B:CYS569 3.8 47.2 1.0 SG B:CYS546 3.8 60.9 1.0 S3 B:SF4604 3.9 97.5 1.0 OG1 B:THR567 4.1 40.6 1.0 SG B:CYS566 4.3 55.4 1.0 N B:GLY570 4.6 38.2 1.0 C B:CYS569 4.6 47.4 1.0 N B:LYS568 4.7 41.7 1.0 C B:LYS568 4.8 39.6 1.0 N B:THR567 4.8 43.8 1.0 SG B:CYS572 4.8 46.6 1.0

Iron binding site 8 out of 168 in the Cryo-Em Structure of the Electron Bifurcating Transhydrogenase Stnabc Complex From Sporomusa Ovata (State 2)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Cryo-Em Structure of the Electron Bifurcating Transhydrogenase Stnabc Complex From Sporomusa Ovata (State 2) within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe604 b:113.1 occ:1.00 FE4 B:SF4604 0.0 113.1 1.0 S3 B:SF4604 2.3 97.5 1.0 SG B:CYS566 2.3 55.4 1.0 S1 B:SF4604 2.3 99.8 1.0 S2 B:SF4604 2.3 92.8 1.0 SG B:CYS546 2.3 60.9 1.0 FE2 B:SF4604 2.7 109.4 1.0 FE1 B:SF4604 2.7 104.2 1.0 FE3 B:SF4604 2.7 107.4 1.0 SG B:CYS572 3.6 46.6 1.0 CB B:CYS566 3.7 49.2 1.0 S4 B:SF4604 3.9 103.4 1.0 CB B:CYS546 4.1 49.6 1.0 CA B:CYS566 4.1 50.1 1.0 N B:THR567 4.5 43.8 1.0 SG B:CYS569 4.7 58.5 1.0 C B:CYS566 4.8 50.5 1.0 CB B:ALA550 5.0 41.3 1.0 N B:LYS568 5.0 41.7 1.0

Iron binding site 9 out of 168 in the Cryo-Em Structure of the Electron Bifurcating Transhydrogenase Stnabc Complex From Sporomusa Ovata (State 2)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Cryo-Em Structure of the Electron Bifurcating Transhydrogenase Stnabc Complex From Sporomusa Ovata (State 2) within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe605 b:112.3 occ:1.00 FE1 B:SF4605 0.0 112.3 1.0 SG B:CYS536 2.3 66.5 1.0 S4 B:SF4605 2.3 101.6 1.0 S2 B:SF4605 2.3 95.8 1.0 S3 B:SF4605 2.3 102.7 1.0 FE3 B:SF4605 2.7 113.7 1.0 FE4 B:SF4605 2.7 110.8 1.0 FE2 B:SF4605 2.7 108.2 1.0 CB B:CYS536 3.7 54.2 1.0 ND1 B:HIS559 3.9 57.5 1.0 S1 B:SF4605 3.9 101.0 1.0 CE1 B:HIS559 4.2 53.6 1.0 SG B:CYS542 4.6 54.8 1.0 CG2 B:ILE531 4.8 42.1 1.0 CA B:CYS536 4.9 53.2 1.0 SG B:CYS576 4.9 50.9 1.0

Iron binding site 10 out of 168 in the Cryo-Em Structure of the Electron Bifurcating Transhydrogenase Stnabc Complex From Sporomusa Ovata (State 2)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Cryo-Em Structure of the Electron Bifurcating Transhydrogenase Stnabc Complex From Sporomusa Ovata (State 2) within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe605 b:108.2 occ:1.00 FE2 B:SF4605 0.0 108.2 1.0 S3 B:SF4605 2.3 102.7 1.0 S1 B:SF4605 2.3 101.0 1.0 S4 B:SF4605 2.3 101.6 1.0 FE4 B:SF4605 2.7 110.8 1.0 FE1 B:SF4605 2.7 112.3 1.0 FE3 B:SF4605 2.7 113.7 1.0 ND1 B:HIS559 2.9 57.5 1.0 CD1 B:ILE531 3.2 45.1 1.0 CB B:HIS559 3.6 50.0 1.0 CG B:HIS559 3.7 52.1 1.0 S2 B:SF4605 3.9 95.8 1.0 CE1 B:HIS559 4.0 53.6 1.0 CG1 B:ILE531 4.0 42.3 1.0 CG2 B:ILE531 4.1 42.1 1.0 N B:HIS559 4.2 51.8 1.0 CG2 B:ILE551 4.4 42.5 1.0 CA B:HIS559 4.4 51.3 1.0 CB B:CYS542 4.7 48.8 1.0 CB B:ILE531 4.7 43.3 1.0 SG B:CYS542 4.8 54.8 1.0 SG B:CYS536 4.8 66.5 1.0 C B:HIS559 4.9 50.8 1.0 CD2 B:HIS559 4.9 50.4 1.0

A.Kumar, F.Kremp, J.Roth, S.A.Freibert, V.Mueller, J.M.Schuller. Molecular Architecture and Electron Transfer Pathway of the Stn Family Transhydrogenase Nat Commun 2023.
ISSN: ESSN 2041-1723
DOI: 10.1038/S41467-023-41212-X