Iron in PDB 8olh: Y345F Variant of Dye Type Peroxidase Aa (Dtpaa) From Streptomyces Lividans

The structure of Y345F Variant of Dye Type Peroxidase Aa (Dtpaa) From Streptomyces Lividans, PDB code: 8olh was solved by M.Lucic, J.A.R.Worrall, M.A.Hough, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	70.32 / 1.23
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	72.022, 67.788, 73.024, 90, 105.66, 90
R / Rfree (%)	13.3 / 15.9

The binding sites of Iron atom in the Y345F Variant of Dye Type Peroxidase Aa (Dtpaa) From Streptomyces Lividans (pdb code 8olh). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Y345F Variant of Dye Type Peroxidase Aa (Dtpaa) From Streptomyces Lividans, PDB code: 8olh:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in the Y345F Variant of Dye Type Peroxidase Aa (Dtpaa) From Streptomyces Lividans


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Y345F Variant of Dye Type Peroxidase Aa (Dtpaa) From Streptomyces Lividans within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe501 b:10.5 occ:1.00 FE A:HEM501 0.0 10.5 1.0 ND A:HEM501 2.0 10.1 1.0 NA A:HEM501 2.0 9.6 1.0 NB A:HEM501 2.1 10.0 1.0 NC A:HEM501 2.1 10.0 1.0 NE2 A:HIS326 2.1 10.2 1.0 O A:HOH778 2.2 11.0 1.0 C4D A:HEM501 3.0 9.8 1.0 C1D A:HEM501 3.0 10.1 1.0 C4A A:HEM501 3.0 9.9 1.0 C1A A:HEM501 3.1 9.9 1.0 C4B A:HEM501 3.1 9.3 1.0 C1B A:HEM501 3.1 9.2 1.0 CE1 A:HIS326 3.1 10.4 1.0 C1C A:HEM501 3.1 9.8 1.0 C4C A:HEM501 3.1 10.4 1.0 CD2 A:HIS326 3.1 10.0 1.0 CHB A:HEM501 3.4 9.7 1.0 CHA A:HEM501 3.4 9.5 1.0 CHC A:HEM501 3.4 9.3 1.0 CHD A:HEM501 3.4 10.2 1.0 NH1 A:ARG342 4.2 10.0 1.0 ND1 A:HIS326 4.2 10.5 1.0 CG A:HIS326 4.2 10.5 1.0 O A:HOH632 4.3 11.4 1.0 C2A A:HEM501 4.3 10.1 1.0 C2D A:HEM501 4.3 9.8 1.0 C3A A:HEM501 4.3 9.8 1.0 C3D A:HEM501 4.3 9.8 1.0 C3C A:HEM501 4.3 10.6 1.0 C2C A:HEM501 4.3 10.2 1.0 C2B A:HEM501 4.3 8.9 1.0 C3B A:HEM501 4.3 9.1 1.0 OD1 A:ASP239 4.5 10.6 1.0 CD A:ARG342 4.8 10.0 1.0 CZ A:ARG342 5.0 10.3 1.0

Iron binding site 2 out of 2 in the Y345F Variant of Dye Type Peroxidase Aa (Dtpaa) From Streptomyces Lividans


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Y345F Variant of Dye Type Peroxidase Aa (Dtpaa) From Streptomyces Lividans within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe501 b:9.6 occ:1.00 FE B:HEM501 0.0 9.6 1.0 ND B:HEM501 2.0 9.2 1.0 NB B:HEM501 2.0 9.1 1.0 NA B:HEM501 2.0 9.5 1.0 NC B:HEM501 2.0 8.9 1.0 O B:HOH726 2.1 20.6 1.0 NE2 B:HIS326 2.1 9.7 1.0 C1D B:HEM501 3.0 8.6 1.0 CE1 B:HIS326 3.0 10.0 1.0 C4D B:HEM501 3.0 8.5 1.0 C1B B:HEM501 3.0 9.5 1.0 C4B B:HEM501 3.0 8.8 1.0 C4A B:HEM501 3.1 9.5 1.0 C4C B:HEM501 3.1 9.0 1.0 C1C B:HEM501 3.1 8.6 1.0 C1A B:HEM501 3.1 9.1 1.0 CD2 B:HIS326 3.1 9.9 1.0 CHD B:HEM501 3.4 9.0 1.0 CHA B:HEM501 3.4 8.9 1.0 CHB B:HEM501 3.4 9.6 1.0 CHC B:HEM501 3.4 8.8 1.0 O B:HOH772 3.7 43.6 1.0 ND1 B:HIS326 4.2 9.7 1.0 CG B:HIS326 4.2 9.4 1.0 NH1 B:ARG342 4.3 10.6 1.0 C2B B:HEM501 4.3 9.1 1.0 C2D B:HEM501 4.3 9.0 1.0 C3D B:HEM501 4.3 9.1 1.0 C2C B:HEM501 4.3 8.7 1.0 C3A B:HEM501 4.3 9.8 1.0 C2A B:HEM501 4.3 9.5 1.0 C3C B:HEM501 4.3 8.8 1.0 C3B B:HEM501 4.3 8.9 1.0 CZ B:ARG342 4.9 9.8 1.0 CD B:ARG342 4.9 10.1 1.0

M.Lucic, J.A.R.Worrall, M.A.Hough. Y345F Variant of Dye Type Peroxidase Aa (Dtpaa) From Streptomyces Lividans To Be Published.