Iron in PDB 8omc: Y345F/F347Y/Y389F Variant of Dye Type Peroxidase Aa (Dtpaa) From Streptomyces Lividans

The structure of Y345F/F347Y/Y389F Variant of Dye Type Peroxidase Aa (Dtpaa) From Streptomyces Lividans, PDB code: 8omc was solved by M.Lucic, J.A.R.Worrall, M.A.Hough, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	58.26 / 1.50
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	71.852, 67.93, 74.483, 90, 105.46, 90
R / Rfree (%)	16.1 / 18.9

The binding sites of Iron atom in the Y345F/F347Y/Y389F Variant of Dye Type Peroxidase Aa (Dtpaa) From Streptomyces Lividans (pdb code 8omc). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Y345F/F347Y/Y389F Variant of Dye Type Peroxidase Aa (Dtpaa) From Streptomyces Lividans, PDB code: 8omc:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in the Y345F/F347Y/Y389F Variant of Dye Type Peroxidase Aa (Dtpaa) From Streptomyces Lividans


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Y345F/F347Y/Y389F Variant of Dye Type Peroxidase Aa (Dtpaa) From Streptomyces Lividans within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe501 b:16.0 occ:1.00 FE A:HEM501 0.0 16.0 1.0 ND A:HEM501 2.0 15.3 1.0 NE2 A:HIS326 2.0 16.7 1.0 NA A:HEM501 2.1 15.3 1.0 NC A:HEM501 2.1 14.7 1.0 NB A:HEM501 2.1 14.6 1.0 O A:HOH761 2.3 18.5 1.0 C1D A:HEM501 3.0 15.4 1.0 C4D A:HEM501 3.0 15.3 1.0 C1B A:HEM501 3.1 15.0 1.0 CE1 A:HIS326 3.1 16.0 1.0 C4B A:HEM501 3.1 13.4 1.0 CD2 A:HIS326 3.1 16.9 1.0 C4A A:HEM501 3.1 15.6 1.0 C1A A:HEM501 3.1 14.8 1.0 C4C A:HEM501 3.1 15.2 1.0 C1C A:HEM501 3.2 15.1 1.0 CHB A:HEM501 3.4 15.7 1.0 CHA A:HEM501 3.4 14.9 1.0 CHD A:HEM501 3.5 16.5 1.0 CHC A:HEM501 3.5 15.0 1.0 NH1 A:ARG342 4.1 15.8 1.0 ND1 A:HIS326 4.2 17.0 1.0 CG A:HIS326 4.2 16.6 1.0 O A:HOH680 4.2 19.4 1.0 C2A A:HEM501 4.3 14.6 1.0 C3B A:HEM501 4.3 14.2 1.0 C3C A:HEM501 4.3 15.6 1.0 C2B A:HEM501 4.3 15.0 1.0 C2D A:HEM501 4.3 13.9 1.0 C3A A:HEM501 4.3 14.9 1.0 C3D A:HEM501 4.3 14.9 1.0 C2C A:HEM501 4.3 14.9 1.0 OD1 A:ASP239 4.5 15.9 1.0 CD A:ARG342 4.8 16.1 1.0 CZ A:ARG342 4.9 15.3 1.0

Iron binding site 2 out of 2 in the Y345F/F347Y/Y389F Variant of Dye Type Peroxidase Aa (Dtpaa) From Streptomyces Lividans


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Y345F/F347Y/Y389F Variant of Dye Type Peroxidase Aa (Dtpaa) From Streptomyces Lividans within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe501 b:16.4 occ:1.00 FE B:HEM501 0.0 16.4 1.0 ND B:HEM501 1.9 14.9 1.0 NA B:HEM501 2.0 15.2 1.0 NB B:HEM501 2.1 16.8 1.0 NC B:HEM501 2.1 15.1 1.0 NE2 B:HIS326 2.1 14.0 1.0 O B:HOH663 2.5 26.2 1.0 C4D B:HEM501 3.0 14.7 1.0 C1D B:HEM501 3.0 16.6 1.0 C4C B:HEM501 3.0 14.7 1.0 C4A B:HEM501 3.0 15.2 1.0 C1A B:HEM501 3.1 15.2 1.0 CD2 B:HIS326 3.1 16.4 1.0 C4B B:HEM501 3.1 14.6 1.0 C1B B:HEM501 3.1 16.8 1.0 CE1 B:HIS326 3.1 14.8 1.0 C1C B:HEM501 3.1 15.5 1.0 CHD B:HEM501 3.4 15.7 1.0 CHA B:HEM501 3.4 16.4 1.0 CHC B:HEM501 3.4 13.5 1.0 CHB B:HEM501 3.5 16.1 1.0 NH1 B:ARG342 4.1 16.3 1.0 O B:HOH753 4.1 31.4 1.0 ND1 B:HIS326 4.2 15.5 1.0 CG B:HIS326 4.2 15.8 1.0 C2D B:HEM501 4.3 17.0 1.0 C2B B:HEM501 4.3 15.4 1.0 C2A B:HEM501 4.3 17.2 1.0 C3C B:HEM501 4.3 16.6 1.0 C3D B:HEM501 4.3 16.7 1.0 C3A B:HEM501 4.3 15.6 1.0 C2C B:HEM501 4.3 15.2 1.0 C3B B:HEM501 4.3 15.2 1.0 OD1 B:ASP239 4.8 20.9 1.0 CD B:ARG342 4.8 17.0 1.0 CZ B:ARG342 4.9 16.7 1.0

M.Lucic, J.A.R.Worrall, M.A.Hough. Y345F/F347Y/Y389F Variant of Dye Type Peroxidase Aa (Dtpaa) From Streptomyces Lividans To Be Published.