Iron in PDB 8ovd: Respiratory Supercomplex (III2-IV2) From Mycobacterium Smegmatis

All present enzymatic activity of Respiratory Supercomplex (III2-IV2) From Mycobacterium Smegmatis:
1.15.1.1; 7.1.1.8; 7.1.1.9;

The structure of Respiratory Supercomplex (III2-IV2) From Mycobacterium Smegmatis also contains other interesting chemical elements:

Magnesium	(Mg)	2 atoms
Calcium	(Ca)	2 atoms
Copper	(Cu)	6 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 16;

Binding sites:

The binding sites of Iron atom in the Respiratory Supercomplex (III2-IV2) From Mycobacterium Smegmatis (pdb code 8ovd). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 16 binding sites of Iron where determined in the Respiratory Supercomplex (III2-IV2) From Mycobacterium Smegmatis, PDB code: 8ovd:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 16 in the Respiratory Supercomplex (III2-IV2) From Mycobacterium Smegmatis


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Respiratory Supercomplex (III2-IV2) From Mycobacterium Smegmatis within 5.0Å range: probe atom residue distance (Å) B Occ O:Fe301 b:13.7 occ:1.00 FE O:HEC301 0.0 13.7 1.0 NC O:HEC301 2.0 13.7 1.0 NB O:HEC301 2.0 13.7 1.0 ND O:HEC301 2.0 13.7 1.0 NA O:HEC301 2.0 13.7 1.0 NE2 O:HIS91 2.1 13.7 1.0 SD O:MET122 2.8 10.7 1.0 CE1 O:HIS91 3.0 13.7 1.0 C1D O:HEC301 3.0 13.7 1.0 C1B O:HEC301 3.0 13.7 1.0 C4D O:HEC301 3.0 13.7 1.0 C1C O:HEC301 3.0 13.7 1.0 C4B O:HEC301 3.0 13.7 1.0 C4A O:HEC301 3.0 13.7 1.0 C1A O:HEC301 3.0 13.7 1.0 C4C O:HEC301 3.0 13.7 1.0 CD2 O:HIS91 3.1 13.7 1.0 CE O:MET122 3.3 10.7 1.0 CHD O:HEC301 3.4 13.7 1.0 CHB O:HEC301 3.4 13.7 1.0 CHA O:HEC301 3.4 13.7 1.0 CHC O:HEC301 3.4 13.7 1.0 CG O:MET122 3.4 10.7 1.0 ND1 O:HIS91 4.1 13.7 1.0 CG O:HIS91 4.2 13.7 1.0 C3B O:HEC301 4.2 13.7 1.0 C2D O:HEC301 4.2 13.7 1.0 C2B O:HEC301 4.2 13.7 1.0 C3C O:HEC301 4.2 13.7 1.0 C3D O:HEC301 4.2 13.7 1.0 C3A O:HEC301 4.3 13.7 1.0 C2A O:HEC301 4.3 13.7 1.0 C2C O:HEC301 4.3 13.7 1.0 CB O:MET122 4.5 10.7 1.0

Iron binding site 2 out of 16 in the Respiratory Supercomplex (III2-IV2) From Mycobacterium Smegmatis


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Respiratory Supercomplex (III2-IV2) From Mycobacterium Smegmatis within 5.0Å range: probe atom residue distance (Å) B Occ O:Fe302 b:5.7 occ:1.00 FE O:HEC302 0.0 5.7 1.0 NB O:HEC302 2.0 5.7 1.0 NC O:HEC302 2.0 5.7 1.0 ND O:HEC302 2.0 5.7 1.0 NA O:HEC302 2.0 5.7 1.0 NE2 O:HIS192 2.3 9.7 1.0 SD O:MET229 2.7 11.2 1.0 C1D O:HEC302 3.0 5.7 1.0 C4B O:HEC302 3.0 5.7 1.0 C1B O:HEC302 3.0 5.7 1.0 C4D O:HEC302 3.0 5.7 1.0 C4A O:HEC302 3.0 5.7 1.0 C1C O:HEC302 3.0 5.7 1.0 C4C O:HEC302 3.0 5.7 1.0 C1A O:HEC302 3.0 5.7 1.0 CD2 O:HIS192 3.2 9.7 1.0 CE1 O:HIS192 3.3 9.7 1.0 CHD O:HEC302 3.3 5.7 1.0 CHB O:HEC302 3.4 5.7 1.0 CHA O:HEC302 3.4 5.7 1.0 CHC O:HEC302 3.4 5.7 1.0 CE O:MET229 3.6 11.2 1.0 CG O:MET229 3.6 11.2 1.0 CB O:MET229 4.1 11.2 1.0 C3B O:HEC302 4.2 5.7 1.0 C2D O:HEC302 4.2 5.7 1.0 C2B O:HEC302 4.2 5.7 1.0 C3D O:HEC302 4.2 5.7 1.0 C3C O:HEC302 4.2 5.7 1.0 C3A O:HEC302 4.2 5.7 1.0 C2A O:HEC302 4.2 5.7 1.0 C2C O:HEC302 4.3 5.7 1.0 CG O:HIS192 4.3 9.7 1.0 ND1 O:HIS192 4.3 9.7 1.0

Iron binding site 3 out of 16 in the Respiratory Supercomplex (III2-IV2) From Mycobacterium Smegmatis


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Respiratory Supercomplex (III2-IV2) From Mycobacterium Smegmatis within 5.0Å range: probe atom residue distance (Å) B Occ M:Fe501 b:9.1 occ:1.00 FE1 M:FES501 0.0 9.1 1.0 S2 M:FES501 2.2 9.1 1.0 S1 M:FES501 2.2 9.1 1.0 ND1 M:HIS348 2.4 7.0 1.0 ND1 M:HIS368 2.5 7.2 1.0 FE2 M:FES501 2.7 9.1 1.0 CG M:HIS368 3.3 7.2 1.0 CE1 M:HIS348 3.3 7.0 1.0 CG M:HIS348 3.4 7.0 1.0 CB M:HIS368 3.4 7.2 1.0 CE1 M:HIS368 3.5 7.2 1.0 CB M:HIS348 3.7 7.0 1.0 N M:HIS368 3.8 7.2 1.0 N M:LEU349 4.1 6.2 1.0 CB M:LEU349 4.1 6.2 1.0 CA M:HIS368 4.2 7.2 1.0 CB M:CYS367 4.2 7.0 1.0 SG M:CYS365 4.3 6.8 1.0 SG M:CYS346 4.4 6.5 1.0 NE2 M:HIS348 4.5 7.0 1.0 CD2 M:HIS368 4.5 7.2 1.0 CD2 M:HIS348 4.5 7.0 1.0 NE2 M:HIS368 4.6 7.2 1.0 CG M:LEU349 4.6 6.2 1.0 C M:CYS367 4.7 7.0 1.0 CA M:LEU349 4.7 6.2 1.0 CG M:PRO384 4.7 7.1 1.0 CD1 M:LEU349 4.8 6.2 1.0 C M:HIS348 4.8 7.0 1.0 CA M:HIS348 4.8 7.0 1.0 C M:HIS368 4.8 7.2 1.0 OG M:SER370 5.0 6.7 1.0

Iron binding site 4 out of 16 in the Respiratory Supercomplex (III2-IV2) From Mycobacterium Smegmatis


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Respiratory Supercomplex (III2-IV2) From Mycobacterium Smegmatis within 5.0Å range: probe atom residue distance (Å) B Occ M:Fe501 b:9.1 occ:1.00 FE2 M:FES501 0.0 9.1 1.0 S1 M:FES501 2.2 9.1 1.0 S2 M:FES501 2.2 9.1 1.0 SG M:CYS365 2.3 6.8 1.0 SG M:CYS346 2.3 6.5 1.0 FE1 M:FES501 2.7 9.1 1.0 CB M:CYS346 3.1 6.5 1.0 CB M:CYS365 3.1 6.8 1.0 CB M:HIS348 4.1 7.0 1.0 CB M:CYS351 4.4 7.1 1.0 ND1 M:HIS348 4.5 7.0 1.0 CA M:CYS346 4.6 6.5 1.0 CB M:SER370 4.6 6.7 1.0 CA M:CYS365 4.6 6.8 1.0 N M:LEU349 4.6 6.2 1.0 OG M:SER370 4.7 6.7 1.0 CB M:CYS367 4.7 7.0 1.0 N M:HIS368 4.7 7.2 1.0 N M:CYS351 4.8 7.1 1.0 CG M:HIS348 4.8 7.0 1.0 ND1 M:HIS368 4.9 7.2 1.0 N M:HIS348 4.9 7.0 1.0 O M:CYS351 4.9 7.1 1.0 CB M:SER353 5.0 6.5 1.0

Iron binding site 5 out of 16 in the Respiratory Supercomplex (III2-IV2) From Mycobacterium Smegmatis


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Respiratory Supercomplex (III2-IV2) From Mycobacterium Smegmatis within 5.0Å range: probe atom residue distance (Å) B Occ N:Fe601 b:14.6 occ:1.00 FE N:HEM601 0.0 14.6 1.0 ND N:HEM601 2.0 14.6 1.0 NA N:HEM601 2.0 14.6 1.0 NC N:HEM601 2.1 14.6 1.0 NB N:HEM601 2.2 14.6 1.0 NE2 N:HIS109 2.2 7.1 1.0 NE2 N:HIS211 2.2 7.6 1.0 C1A N:HEM601 3.0 14.6 1.0 C1D N:HEM601 3.0 14.6 1.0 C4D N:HEM601 3.0 14.6 1.0 C4C N:HEM601 3.0 14.6 1.0 C4A N:HEM601 3.1 14.6 1.0 C4B N:HEM601 3.1 14.6 1.0 CE1 N:HIS211 3.1 7.6 1.0 C1B N:HEM601 3.1 14.6 1.0 C1C N:HEM601 3.1 14.6 1.0 CD2 N:HIS109 3.1 7.1 1.0 CE1 N:HIS109 3.2 7.1 1.0 CD2 N:HIS211 3.2 7.6 1.0 CHD N:HEM601 3.3 14.6 1.0 CHA N:HEM601 3.3 14.6 1.0 CHB N:HEM601 3.5 14.6 1.0 CHC N:HEM601 3.5 14.6 1.0 C2A N:HEM601 4.1 14.6 1.0 C3C N:HEM601 4.2 14.6 1.0 C3A N:HEM601 4.2 14.6 1.0 C2D N:HEM601 4.2 14.6 1.0 C3D N:HEM601 4.2 14.6 1.0 ND1 N:HIS211 4.3 7.6 1.0 ND1 N:HIS109 4.3 7.1 1.0 C2C N:HEM601 4.3 14.6 1.0 CG N:HIS109 4.3 7.1 1.0 C3B N:HEM601 4.3 14.6 1.0 C2B N:HEM601 4.3 14.6 1.0 CG N:HIS211 4.4 7.6 1.0 CA N:GLY158 4.8 6.6 1.0

Iron binding site 6 out of 16 in the Respiratory Supercomplex (III2-IV2) From Mycobacterium Smegmatis


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Respiratory Supercomplex (III2-IV2) From Mycobacterium Smegmatis within 5.0Å range: probe atom residue distance (Å) B Occ N:Fe607 b:43.7 occ:1.00 FE N:HEM607 0.0 43.7 1.0 ND N:HEM607 1.9 43.7 1.0 NA N:HEM607 2.0 43.7 1.0 NC N:HEM607 2.1 43.7 1.0 NB N:HEM607 2.1 43.7 1.0 NE2 N:HIS123 2.3 7.6 1.0 NE2 N:HIS226 2.4 10.0 1.0 C4D N:HEM607 2.8 43.7 1.0 C1D N:HEM607 2.9 43.7 1.0 C1A N:HEM607 2.9 43.7 1.0 C4C N:HEM607 3.0 43.7 1.0 C1C N:HEM607 3.0 43.7 1.0 CD2 N:HIS123 3.0 7.6 1.0 C4A N:HEM607 3.0 43.7 1.0 C4B N:HEM607 3.1 43.7 1.0 C1B N:HEM607 3.1 43.7 1.0 CD2 N:HIS226 3.2 10.0 1.0 CHA N:HEM607 3.2 43.7 1.0 CHD N:HEM607 3.3 43.7 1.0 CE1 N:HIS123 3.4 7.6 1.0 CHC N:HEM607 3.4 43.7 1.0 CE1 N:HIS226 3.4 10.0 1.0 CHB N:HEM607 3.4 43.7 1.0 C2A N:HEM607 4.0 43.7 1.0 C3D N:HEM607 4.0 43.7 1.0 C3C N:HEM607 4.1 43.7 1.0 C2D N:HEM607 4.1 43.7 1.0 C2C N:HEM607 4.1 43.7 1.0 C3A N:HEM607 4.1 43.7 1.0 CG N:HIS123 4.2 7.6 1.0 C2B N:HEM607 4.2 43.7 1.0 C3B N:HEM607 4.3 43.7 1.0 ND1 N:HIS123 4.4 7.6 1.0 CG N:HIS226 4.4 10.0 1.0 ND1 N:HIS226 4.5 10.0 1.0

Iron binding site 7 out of 16 in the Respiratory Supercomplex (III2-IV2) From Mycobacterium Smegmatis


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Respiratory Supercomplex (III2-IV2) From Mycobacterium Smegmatis within 5.0Å range: probe atom residue distance (Å) B Occ R:Fe602 b:13.1 occ:1.00 FE R:HEA602 0.0 13.1 1.0 NA R:HEA602 2.0 13.1 1.0 ND R:HEA602 2.1 13.1 1.0 NB R:HEA602 2.1 13.1 1.0 NC R:HEA602 2.1 13.1 1.0 NE2 R:HIS397 2.6 9.1 1.0 C1A R:HEA602 3.0 13.1 1.0 C4A R:HEA602 3.1 13.1 1.0 C4D R:HEA602 3.1 13.1 1.0 C4B R:HEA602 3.1 13.1 1.0 C1D R:HEA602 3.1 13.1 1.0 C1C R:HEA602 3.1 13.1 1.0 C1B R:HEA602 3.1 13.1 1.0 C4C R:HEA602 3.1 13.1 1.0 CHA R:HEA602 3.4 13.1 1.0 CHC R:HEA602 3.4 13.1 1.0 CHB R:HEA602 3.5 13.1 1.0 CHD R:HEA602 3.5 13.1 1.0 CE1 R:HIS397 3.5 9.1 1.0 CD2 R:HIS397 3.7 9.1 1.0 C2A R:HEA602 4.3 13.1 1.0 C3A R:HEA602 4.3 13.1 1.0 CU R:CU604 4.3 56.6 1.0 C3D R:HEA602 4.4 13.1 1.0 C2D R:HEA602 4.4 13.1 1.0 C3C R:HEA602 4.4 13.1 1.0 C3B R:HEA602 4.4 13.1 1.0 C2B R:HEA602 4.4 13.1 1.0 C2C R:HEA602 4.4 13.1 1.0 ND1 R:HIS397 4.7 9.1 1.0 CG R:HIS397 4.8 9.1 1.0 CG1 R:VAL401 4.9 9.9 1.0

Iron binding site 8 out of 16 in the Respiratory Supercomplex (III2-IV2) From Mycobacterium Smegmatis


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Respiratory Supercomplex (III2-IV2) From Mycobacterium Smegmatis within 5.0Å range: probe atom residue distance (Å) B Occ R:Fe603 b:14.6 occ:1.00 FE R:HEA603 0.0 14.6 1.0 NA R:HEA603 2.1 14.6 1.0 NE2 R:HIS399 2.1 9.3 1.0 NB R:HEA603 2.2 14.6 1.0 ND R:HEA603 2.2 14.6 1.0 NC R:HEA603 2.2 14.6 1.0 NE2 R:HIS86 2.2 7.8 1.0 CE1 R:HIS399 2.9 9.3 1.0 C4A R:HEA603 3.1 14.6 1.0 C4B R:HEA603 3.1 14.6 1.0 C1B R:HEA603 3.1 14.6 1.0 CD2 R:HIS86 3.1 7.8 1.0 C1A R:HEA603 3.1 14.6 1.0 C1C R:HEA603 3.1 14.6 1.0 C4D R:HEA603 3.1 14.6 1.0 C1D R:HEA603 3.1 14.6 1.0 C4C R:HEA603 3.2 14.6 1.0 CD2 R:HIS399 3.2 9.3 1.0 CE1 R:HIS86 3.2 7.8 1.0 CHC R:HEA603 3.4 14.6 1.0 CHD R:HEA603 3.4 14.6 1.0 CHB R:HEA603 3.5 14.6 1.0 CHA R:HEA603 3.5 14.6 1.0 ND1 R:HIS399 4.1 9.3 1.0 CG R:HIS399 4.3 9.3 1.0 C3A R:HEA603 4.3 14.6 1.0 CG R:HIS86 4.3 7.8 1.0 ND1 R:HIS86 4.3 7.8 1.0 C2A R:HEA603 4.3 14.6 1.0 C2B R:HEA603 4.4 14.6 1.0 C3D R:HEA603 4.4 14.6 1.0 C2D R:HEA603 4.4 14.6 1.0 C3B R:HEA603 4.4 14.6 1.0 C2C R:HEA603 4.4 14.6 1.0 C3C R:HEA603 4.4 14.6 1.0 CZ R:PHE446 5.0 8.6 1.0

Iron binding site 9 out of 16 in the Respiratory Supercomplex (III2-IV2) From Mycobacterium Smegmatis


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Respiratory Supercomplex (III2-IV2) From Mycobacterium Smegmatis within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe301 b:13.7 occ:1.00 FE C:HEC301 0.0 13.7 1.0 NC C:HEC301 2.0 13.7 1.0 NB C:HEC301 2.0 13.7 1.0 ND C:HEC301 2.0 13.7 1.0 NA C:HEC301 2.0 13.7 1.0 NE2 C:HIS91 2.1 13.8 1.0 SD C:MET122 2.7 10.9 1.0 CE1 C:HIS91 3.0 13.8 1.0 C1D C:HEC301 3.0 13.7 1.0 C1B C:HEC301 3.0 13.7 1.0 C4D C:HEC301 3.0 13.7 1.0 C1C C:HEC301 3.0 13.7 1.0 C4B C:HEC301 3.0 13.7 1.0 C4A C:HEC301 3.0 13.7 1.0 C1A C:HEC301 3.0 13.7 1.0 C4C C:HEC301 3.0 13.7 1.0 CD2 C:HIS91 3.1 13.8 1.0 CHD C:HEC301 3.4 13.7 1.0 CHB C:HEC301 3.4 13.7 1.0 CHA C:HEC301 3.4 13.7 1.0 CHC C:HEC301 3.4 13.7 1.0 CG C:MET122 3.5 10.9 1.0 CE C:MET122 3.5 10.9 1.0 ND1 C:HIS91 4.1 13.8 1.0 CG C:HIS91 4.2 13.8 1.0 C3B C:HEC301 4.2 13.7 1.0 C2D C:HEC301 4.2 13.7 1.0 C2B C:HEC301 4.2 13.7 1.0 C3C C:HEC301 4.2 13.7 1.0 C3D C:HEC301 4.2 13.7 1.0 C3A C:HEC301 4.3 13.7 1.0 C2A C:HEC301 4.3 13.7 1.0 C2C C:HEC301 4.3 13.7 1.0 CB C:MET122 4.4 10.9 1.0

Iron binding site 10 out of 16 in the Respiratory Supercomplex (III2-IV2) From Mycobacterium Smegmatis


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Respiratory Supercomplex (III2-IV2) From Mycobacterium Smegmatis within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe302 b:21.7 occ:1.00 FE C:HEC302 0.0 21.7 1.0 NB C:HEC302 2.0 21.7 1.0 NC C:HEC302 2.0 21.7 1.0 ND C:HEC302 2.0 21.7 1.0 NA C:HEC302 2.0 21.7 1.0 NE2 C:HIS192 2.3 9.7 1.0 SD C:MET229 2.7 7.4 1.0 C1D C:HEC302 3.0 21.7 1.0 C4B C:HEC302 3.0 21.7 1.0 C1B C:HEC302 3.0 21.7 1.0 C4D C:HEC302 3.0 21.7 1.0 C4A C:HEC302 3.0 21.7 1.0 C1C C:HEC302 3.0 21.7 1.0 C4C C:HEC302 3.0 21.7 1.0 C1A C:HEC302 3.0 21.7 1.0 CD2 C:HIS192 3.2 9.7 1.0 CE1 C:HIS192 3.3 9.7 1.0 CHD C:HEC302 3.3 21.7 1.0 CHB C:HEC302 3.4 21.7 1.0 CHA C:HEC302 3.4 21.7 1.0 CHC C:HEC302 3.4 21.7 1.0 CG C:MET229 3.6 7.4 1.0 CE C:MET229 3.6 7.4 1.0 CB C:MET229 4.0 7.4 1.0 C3B C:HEC302 4.2 21.7 1.0 C2D C:HEC302 4.2 21.7 1.0 C2B C:HEC302 4.2 21.7 1.0 C3C C:HEC302 4.2 21.7 1.0 C3D C:HEC302 4.2 21.7 1.0 C3A C:HEC302 4.2 21.7 1.0 C2A C:HEC302 4.3 21.7 1.0 C2C C:HEC302 4.3 21.7 1.0 CG C:HIS192 4.3 9.7 1.0 ND1 C:HIS192 4.3 9.7 1.0

D.Riepl, A.P.Gamiz-Hernandez, T.Kovalova, S.M.Krol, S.L.Mader, D.Sjostrand, M.Hogbom, P.Brzezinski, V.R.I.Kaila. Long-Range Charge Transfer Mechanism of the III 2 IV 2 Mycobacterial Supercomplex. Nat Commun V. 15 5276 2024.
ISSN: ESSN 2041-1723
PubMed: 38902248
DOI: 10.1038/S41467-024-49628-9