Atomistry » Iron » PDB 8pmk-8q1w » 8pp4
Atomistry »
  Iron »
    PDB 8pmk-8q1w »
      8pp4 »

Iron in PDB 8pp4: Binary Crystal Structure of Positively Supercharged Ferritin Variant Ftn(Pos) and Reduced Charge Negatively Supercharged Ferritin Variant Ftn(Neg)-M3 (Mg Formate Condition)

Enzymatic activity of Binary Crystal Structure of Positively Supercharged Ferritin Variant Ftn(Pos) and Reduced Charge Negatively Supercharged Ferritin Variant Ftn(Neg)-M3 (Mg Formate Condition)

All present enzymatic activity of Binary Crystal Structure of Positively Supercharged Ferritin Variant Ftn(Pos) and Reduced Charge Negatively Supercharged Ferritin Variant Ftn(Neg)-M3 (Mg Formate Condition):
1.16.3.1;

Protein crystallography data

The structure of Binary Crystal Structure of Positively Supercharged Ferritin Variant Ftn(Pos) and Reduced Charge Negatively Supercharged Ferritin Variant Ftn(Neg)-M3 (Mg Formate Condition), PDB code: 8pp4 was solved by L.Lang, T.Beck, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.36 / 2.00
Space group P 4
Cell size a, b, c (Å), α, β, γ (°) 127.039, 127.039, 176.961, 90, 90, 90
R / Rfree (%) 18.1 / 22.1

Other elements in 8pp4:

The structure of Binary Crystal Structure of Positively Supercharged Ferritin Variant Ftn(Pos) and Reduced Charge Negatively Supercharged Ferritin Variant Ftn(Neg)-M3 (Mg Formate Condition) also contains other interesting chemical elements:

Magnesium (Mg) 7 atoms
Chlorine (Cl) 3 atoms

Iron Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 14;

Binding sites:

The binding sites of Iron atom in the Binary Crystal Structure of Positively Supercharged Ferritin Variant Ftn(Pos) and Reduced Charge Negatively Supercharged Ferritin Variant Ftn(Neg)-M3 (Mg Formate Condition) (pdb code 8pp4). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 14 binding sites of Iron where determined in the Binary Crystal Structure of Positively Supercharged Ferritin Variant Ftn(Pos) and Reduced Charge Negatively Supercharged Ferritin Variant Ftn(Neg)-M3 (Mg Formate Condition), PDB code: 8pp4:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 14 in 8pp4

Go back to Iron Binding Sites List in 8pp4
Iron binding site 1 out of 14 in the Binary Crystal Structure of Positively Supercharged Ferritin Variant Ftn(Pos) and Reduced Charge Negatively Supercharged Ferritin Variant Ftn(Neg)-M3 (Mg Formate Condition)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Binary Crystal Structure of Positively Supercharged Ferritin Variant Ftn(Pos) and Reduced Charge Negatively Supercharged Ferritin Variant Ftn(Neg)-M3 (Mg Formate Condition) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe201

b:34.9
occ:1.00
 HD1 A:HIS65 1.4 25.7 0.0
OE1 A:GLU62 2.0 32.6 1.0
O A:HOH316 2.0 30.5 1.0
OE1 A:GLU27 2.1 25.2 1.0
ND1 A:HIS65 2.2 26.7 1.0
O A:HOH315 2.3 32.2 1.0
CD A:GLU62 2.9 29.1 1.0
CD A:GLU27 3.0 23.7 1.0
CE1 A:HIS65 3.1 36.5 1.0
CG A:HIS65 3.2 27.9 1.0
OE2 A:GLU62 3.2 32.8 1.0
HG12 A:VAL110 3.2 28.1 1.0
HE1 A:HIS65 3.3 32.6 1.0
HB3 A:HIS65 3.3 27.8 1.0
HB2 A:HIS65 3.3 27.8 1.0
OE2 A:GLU27 3.4 25.0 1.0
CB A:HIS65 3.5 28.3 1.0
HA A:GLU62 3.6 27.0 1.0
OE1 A:GLN141 4.0 34.3 1.0
O A:HOH322 4.0 34.1 1.0
HA A:GLU27 4.1 25.9 1.0
CG1 A:VAL110 4.1 29.0 1.0
CG A:GLU62 4.3 28.2 1.0
HB3 A:GLU27 4.3 25.2 1.0
NE2 A:HIS65 4.3 31.5 1.0
HG11 A:VAL110 4.3 28.1 1.0
CD2 A:HIS65 4.3 28.1 1.0
CG A:GLU27 4.3 23.6 1.0
HB3 A:GLU62 4.4 27.4 1.0
CA A:GLU62 4.5 27.4 1.0
HG13 A:VAL110 4.5 28.1 1.0
HG22 A:VAL110 4.6 26.3 1.0
HD2 A:TYR137 4.6 26.6 1.0
HE2 A:TYR137 4.6 27.2 1.0
CB A:GLU62 4.6 27.0 1.0
CB A:GLU27 4.7 25.5 1.0
HB3 A:ALA30 4.7 26.6 1.0
HG3 A:GLU27 4.7 24.1 1.0
O A:HOH388 4.8 48.0 1.0
HG3 A:GLU62 4.8 28.1 1.0
HG2 A:GLU62 4.8 28.1 1.0
CA A:GLU27 4.9 26.1 1.0
CD A:GLN141 4.9 30.9 1.0
O A:HOH302 4.9 41.7 1.0
HE21 A:GLN141 5.0 32.1 1.0
O A:GLU62 5.0 25.2 1.0
HG2 A:GLU27 5.0 24.1 1.0
HD12 A:LEU114 5.0 27.1 1.0

Iron binding site 2 out of 14 in 8pp4

Go back to Iron Binding Sites List in 8pp4
Iron binding site 2 out of 14 in the Binary Crystal Structure of Positively Supercharged Ferritin Variant Ftn(Pos) and Reduced Charge Negatively Supercharged Ferritin Variant Ftn(Neg)-M3 (Mg Formate Condition)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Binary Crystal Structure of Positively Supercharged Ferritin Variant Ftn(Pos) and Reduced Charge Negatively Supercharged Ferritin Variant Ftn(Neg)-M3 (Mg Formate Condition) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe201

b:34.3
occ:1.00
 HD1 B:HIS65 1.3 27.5 0.0
OE1 B:GLU62 2.0 34.1 1.0
OE1 B:GLU27 2.0 29.4 1.0
O B:HOH322 2.0 27.1 1.0
ND1 B:HIS65 2.1 28.5 1.0
O B:HOH332 2.2 34.1 1.0
CD B:GLU62 3.0 31.9 1.0
CD B:GLU27 3.0 29.5 1.0
CE1 B:HIS65 3.0 33.2 1.0
CG B:HIS65 3.1 29.6 1.0
HE1 B:HIS65 3.2 32.2 1.0
HG12 B:VAL110 3.2 30.2 1.0
HB2 B:HIS65 3.3 27.0 1.0
OE2 B:GLU62 3.3 36.7 1.0
HB3 B:HIS65 3.3 27.0 1.0
OE2 B:GLU27 3.4 27.5 1.0
CB B:HIS65 3.5 27.0 1.0
HA B:GLU62 3.6 27.6 1.0
OE1 B:GLN141 4.1 37.4 1.0
CG1 B:VAL110 4.1 30.4 1.0
NE2 B:HIS65 4.2 34.2 1.0
HA B:GLU27 4.2 26.9 1.0
CD2 B:HIS65 4.2 32.9 1.0
HG11 B:VAL110 4.3 30.2 1.0
HB3 B:GLU27 4.3 26.7 1.0
CG B:GLU27 4.3 27.7 1.0
CG B:GLU62 4.3 29.4 1.0
HG13 B:VAL110 4.5 30.2 1.0
CA B:GLU62 4.5 27.8 1.0
HB3 B:GLU62 4.5 28.9 1.0
HD2 B:TYR137 4.5 29.4 1.0
HG22 B:VAL110 4.6 29.2 1.0
HE2 B:TYR137 4.6 29.1 1.0
CB B:GLU62 4.7 29.2 1.0
HB3 B:ALA30 4.7 27.0 1.0
CB B:GLU27 4.7 25.9 1.0
HG3 B:GLU27 4.7 27.6 1.0
HG3 B:GLU62 4.9 29.9 1.0
HG2 B:GLU62 4.9 29.9 1.0
CD B:GLN141 4.9 32.3 1.0
HE2 B:HIS65 4.9 34.9 0.0
CA B:GLU27 5.0 27.7 1.0
HD12 B:LEU114 5.0 27.6 1.0
HE21 B:GLN141 5.0 33.5 1.0
HG2 B:GLU27 5.0 27.6 1.0

Iron binding site 3 out of 14 in 8pp4

Go back to Iron Binding Sites List in 8pp4
Iron binding site 3 out of 14 in the Binary Crystal Structure of Positively Supercharged Ferritin Variant Ftn(Pos) and Reduced Charge Negatively Supercharged Ferritin Variant Ftn(Neg)-M3 (Mg Formate Condition)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Binary Crystal Structure of Positively Supercharged Ferritin Variant Ftn(Pos) and Reduced Charge Negatively Supercharged Ferritin Variant Ftn(Neg)-M3 (Mg Formate Condition) within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe201

b:34.9
occ:1.00
 HD1 C:HIS65 1.3 29.7 0.0
OE1 C:GLU62 2.0 29.9 1.0
OE1 C:GLU27 2.0 32.8 1.0
O C:HOH342 2.1 30.4 1.0
ND1 C:HIS65 2.2 30.3 1.0
O C:HOH332 2.2 28.9 1.0
CD C:GLU62 3.0 30.3 1.0
CD C:GLU27 3.0 29.3 1.0
CE1 C:HIS65 3.1 34.6 1.0
CG C:HIS65 3.2 31.3 1.0
HE1 C:HIS65 3.2 32.7 1.0
HG12 C:VAL110 3.3 30.2 1.0
HB2 C:HIS65 3.3 29.4 1.0
HB3 C:HIS65 3.3 29.3 1.0
OE2 C:GLU27 3.4 28.6 1.0
OE2 C:GLU62 3.4 34.9 1.0
HA C:GLU62 3.5 26.7 1.0
CB C:HIS65 3.5 29.5 1.0
O C:HOH306 4.0 40.6 1.0
OE1 C:GLN141 4.1 37.6 1.0
HA C:GLU27 4.2 25.8 1.0
CG1 C:VAL110 4.2 31.0 1.0
NE2 C:HIS65 4.3 31.0 1.0
CG C:GLU62 4.3 28.1 1.0
CG C:GLU27 4.3 26.3 1.0
CD2 C:HIS65 4.3 34.0 1.0
HB3 C:GLU27 4.3 25.2 1.0
CA C:GLU62 4.4 27.0 1.0
HB3 C:GLU62 4.4 27.2 1.0
HE2 C:TYR137 4.5 24.5 1.0
HG11 C:VAL110 4.5 30.2 1.0
HG22 C:VAL110 4.5 31.9 1.0
HD2 C:TYR137 4.5 25.5 1.0
O C:HOH377 4.5 45.9 1.0
HG13 C:VAL110 4.6 30.2 1.0
CB C:GLU62 4.6 27.0 1.0
HB3 C:ALA30 4.7 28.5 1.0
HG3 C:GLU27 4.7 26.6 1.0
CB C:GLU27 4.7 24.5 1.0
HE21 C:GLN141 4.9 31.7 1.0
HG2 C:GLU62 4.9 28.3 1.0
HG3 C:GLU62 4.9 28.3 1.0
O C:GLU62 4.9 26.9 1.0
CD C:GLN141 4.9 31.0 1.0
CA C:GLU27 4.9 25.5 1.0
HG2 C:GLU27 5.0 26.6 1.0

Iron binding site 4 out of 14 in 8pp4

Go back to Iron Binding Sites List in 8pp4
Iron binding site 4 out of 14 in the Binary Crystal Structure of Positively Supercharged Ferritin Variant Ftn(Pos) and Reduced Charge Negatively Supercharged Ferritin Variant Ftn(Neg)-M3 (Mg Formate Condition)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Binary Crystal Structure of Positively Supercharged Ferritin Variant Ftn(Pos) and Reduced Charge Negatively Supercharged Ferritin Variant Ftn(Neg)-M3 (Mg Formate Condition) within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe202

b:432.4
occ:1.00
 HG3 C:LYS172 2.2 29.9 0.5
HD23 C:LEU169 2.3 26.5 1.0
HG2 C:LYS172 2.5 27.7 0.5
HE2 C:TYR168 2.5 26.5 1.0
HB2 C:LYS172 2.5 29.4 0.5
HB2 C:LYS172 2.5 27.7 0.5
HB3 C:LYS172 2.7 27.4 0.5
HA C:LEU169 2.8 25.4 1.0
CG C:LYS172 2.9 29.5 0.5
CE2 C:TYR168 2.9 26.8 1.0
CB C:LYS172 2.9 27.6 0.5
HG2 C:LYS172 3.0 29.4 0.5
CB C:LYS172 3.1 29.4 0.5
CG C:LYS172 3.1 27.0 0.5
CD2 C:LEU169 3.2 25.8 1.0
HB3 C:LYS172 3.3 29.1 0.5
HD2 C:TYR168 3.3 24.8 1.0
CD2 C:TYR168 3.3 24.2 1.0
HD21 C:LEU169 3.4 26.1 1.0
HD22 C:LEU169 3.6 26.1 1.0
CZ C:TYR168 3.7 26.5 1.0
CA C:LEU169 3.8 25.4 1.0
HG3 C:LYS172 3.8 27.3 0.5
HD3 C:LYS172 3.9 27.1 0.5
HE2 C:HIS173 3.9 24.2 0.0
O C:TYR168 3.9 24.4 1.0
NE2 C:HIS173 4.0 25.2 1.0
CD C:LYS172 4.1 27.3 0.5
OH C:TYR168 4.1 27.3 1.0
CD C:LYS172 4.2 28.9 0.5
CG C:LEU169 4.3 26.3 1.0
HE3 C:LYS172 4.3 27.7 0.5
H C:LYS172 4.3 26.0 0.5
H C:LYS172 4.4 25.6 0.5
HG C:LEU169 4.4 26.5 1.0
C C:TYR168 4.4 23.8 1.0
N C:LEU169 4.4 24.6 1.0
CA C:LYS172 4.4 26.9 0.5
CG C:TYR168 4.4 24.2 1.0
CE1 C:HIS173 4.5 30.6 1.0
O C:LEU169 4.5 25.2 1.0
CB C:LEU169 4.5 27.2 1.0
CA C:LYS172 4.5 27.7 0.5
CD2 C:HIS173 4.5 29.6 1.0
HD2 C:LYS172 4.5 28.8 0.5
HE1 C:HIS173 4.6 29.1 1.0
C C:LEU169 4.6 24.7 1.0
CE C:LYS172 4.6 27.9 0.5
HE2 C:LYS172 4.6 27.7 0.5
HB3 C:LEU169 4.7 26.6 1.0
CE1 C:TYR168 4.7 25.2 1.0
HD2 C:HIS173 4.7 28.6 1.0
HE2 C:LYS172 4.7 26.2 0.5
HD2 C:LYS172 4.8 27.1 0.5
HH C:TYR168 4.8 27.3 0.0
HA C:LYS172 4.9 26.7 0.5
N C:LYS172 4.9 25.2 0.5
N C:LYS172 4.9 25.7 0.5
HD3 C:LYS172 4.9 28.8 0.5
O C:HOH315 4.9 28.0 1.0

Iron binding site 5 out of 14 in 8pp4

Go back to Iron Binding Sites List in 8pp4
Iron binding site 5 out of 14 in the Binary Crystal Structure of Positively Supercharged Ferritin Variant Ftn(Pos) and Reduced Charge Negatively Supercharged Ferritin Variant Ftn(Neg)-M3 (Mg Formate Condition)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Binary Crystal Structure of Positively Supercharged Ferritin Variant Ftn(Pos) and Reduced Charge Negatively Supercharged Ferritin Variant Ftn(Neg)-M3 (Mg Formate Condition) within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Fe201

b:35.2
occ:1.00
 HD1 D:HIS65 1.3 37.0 0.0
OE1 D:GLU62 2.1 34.0 1.0
O D:HOH311 2.1 29.9 1.0
OE1 D:GLU27 2.1 32.5 1.0
O D:HOH303 2.1 33.5 1.0
ND1 D:HIS65 2.2 35.7 1.0
CD D:GLU62 2.9 31.7 1.0
CD D:GLU27 3.0 31.6 1.0
CE1 D:HIS65 3.1 36.5 1.0
OE2 D:GLU62 3.2 36.2 1.0
HG12 D:VAL110 3.2 28.5 1.0
CG D:HIS65 3.2 32.9 1.0
HE1 D:HIS65 3.2 35.5 1.0
HB2 D:HIS65 3.3 29.8 1.0
OE2 D:GLU27 3.4 26.2 1.0
HB3 D:HIS65 3.4 29.8 1.0
CB D:HIS65 3.5 30.1 1.0
HA D:GLU62 3.6 27.1 1.0
OE1 D:GLN141 4.0 36.9 1.0
O D:HOH371 4.1 43.3 1.0
CG1 D:VAL110 4.2 29.1 1.0
HA D:GLU27 4.2 27.8 1.0
NE2 D:HIS65 4.3 33.7 1.0
CG D:GLU62 4.3 27.9 1.0
HB3 D:GLU27 4.3 28.8 1.0
CG D:GLU27 4.3 30.6 1.0
CD2 D:HIS65 4.3 32.9 1.0
HG22 D:VAL110 4.4 29.1 1.0
HG11 D:VAL110 4.4 28.5 1.0
HG13 D:VAL110 4.5 28.5 1.0
HB3 D:GLU62 4.5 27.2 1.0
O D:HOH364 4.5 40.9 1.0
HD1 D:TYR137 4.5 29.9 1.0
CA D:GLU62 4.5 27.0 1.0
HE1 D:TYR137 4.6 29.9 1.0
HB3 D:ALA30 4.7 25.1 1.0
CB D:GLU62 4.7 27.0 1.0
CB D:GLU27 4.7 28.4 1.0
HG3 D:GLU27 4.7 30.3 1.0
HG2 D:GLU62 4.8 28.5 1.0
HG3 D:GLU62 4.9 28.5 1.0
CD D:GLN141 5.0 29.6 1.0
CA D:GLU27 5.0 27.9 1.0
HD12 D:LEU114 5.0 27.2 1.0

Iron binding site 6 out of 14 in 8pp4

Go back to Iron Binding Sites List in 8pp4
Iron binding site 6 out of 14 in the Binary Crystal Structure of Positively Supercharged Ferritin Variant Ftn(Pos) and Reduced Charge Negatively Supercharged Ferritin Variant Ftn(Neg)-M3 (Mg Formate Condition)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Binary Crystal Structure of Positively Supercharged Ferritin Variant Ftn(Pos) and Reduced Charge Negatively Supercharged Ferritin Variant Ftn(Neg)-M3 (Mg Formate Condition) within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Fe201

b:36.6
occ:1.00
 HD1 E:HIS65 1.4 33.5 0.0
O E:HOH333 1.9 26.3 1.0
OE2 E:GLU27 2.0 35.2 1.0
OE1 E:GLU62 2.0 35.2 1.0
O E:HOH308 2.2 30.3 1.0
ND1 E:HIS65 2.2 33.8 1.0
CD E:GLU27 2.9 30.6 1.0
CD E:GLU62 3.0 34.2 1.0
CE1 E:HIS65 3.1 36.7 1.0
HG12 E:VAL110 3.2 35.7 1.0
CG E:HIS65 3.3 33.4 1.0
HE1 E:HIS65 3.3 34.8 1.0
OE1 E:GLU27 3.3 32.1 1.0
HB3 E:HIS65 3.3 30.2 1.0
OE2 E:GLU62 3.4 39.4 1.0
HB2 E:HIS65 3.4 30.2 1.0
CB E:HIS65 3.6 30.1 1.0
HA E:GLU62 3.6 30.0 1.0
OE1 E:GLN141 4.0 35.8 1.0
CG1 E:VAL110 4.2 35.3 1.0
HA E:GLU27 4.2 28.7 1.0
CG E:GLU27 4.3 29.5 1.0
NE2 E:HIS65 4.3 32.4 1.0
CG E:GLU62 4.3 31.1 1.0
HG22 E:VAL110 4.4 39.0 1.0
CD2 E:HIS65 4.4 31.9 1.0
HB3 E:GLU27 4.4 28.6 1.0
HB3 E:GLU62 4.4 30.5 1.0
HG11 E:VAL110 4.5 35.7 1.0
CA E:GLU62 4.5 30.7 1.0
HG13 E:VAL110 4.5 35.7 1.0
HD2 E:TYR137 4.5 32.6 1.0
HE2 E:TYR137 4.6 31.9 1.0
CB E:GLU62 4.6 30.2 1.0
HG3 E:GLU27 4.7 29.2 1.0
HB3 E:ALA30 4.7 26.8 1.0
CB E:GLU27 4.7 27.5 1.0
HG2 E:GLU62 4.9 31.6 1.0
HG3 E:GLU62 4.9 31.6 1.0
OE1 E:GLU107 4.9 39.1 1.0
HG2 E:GLU27 4.9 29.2 1.0
CA E:GLU27 4.9 30.4 1.0
CD E:GLN141 5.0 32.9 1.0
O E:GLU62 5.0 32.3 1.0

Iron binding site 7 out of 14 in 8pp4

Go back to Iron Binding Sites List in 8pp4
Iron binding site 7 out of 14 in the Binary Crystal Structure of Positively Supercharged Ferritin Variant Ftn(Pos) and Reduced Charge Negatively Supercharged Ferritin Variant Ftn(Neg)-M3 (Mg Formate Condition)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Binary Crystal Structure of Positively Supercharged Ferritin Variant Ftn(Pos) and Reduced Charge Negatively Supercharged Ferritin Variant Ftn(Neg)-M3 (Mg Formate Condition) within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Fe201

b:37.5
occ:1.00
 HD1 F:HIS65 1.3 39.3 0.0
OE1 F:GLU62 2.0 33.4 1.0
OE1 F:GLU27 2.0 34.6 1.0
O F:HOH310 2.1 38.4 1.0
ND1 F:HIS65 2.1 38.6 1.0
O F:HOH306 2.2 30.1 1.0
CD F:GLU62 2.9 33.5 1.0
CE1 F:HIS65 3.0 39.4 1.0
CD F:GLU27 3.0 31.8 1.0
HE1 F:HIS65 3.1 39.0 1.0
HG12 F:VAL110 3.1 30.4 1.0
CG F:HIS65 3.2 35.6 1.0
OE2 F:GLU62 3.3 37.7 1.0
HB2 F:HIS65 3.4 30.7 1.0
HB3 F:HIS65 3.4 30.7 1.0
OE2 F:GLU27 3.4 33.2 1.0
CB F:HIS65 3.6 29.3 1.0
HA F:GLU62 3.6 28.2 1.0
OE1 F:GLN141 4.0 42.1 1.0
CG1 F:VAL110 4.1 30.2 1.0
NE2 F:HIS65 4.2 39.2 1.0
HA F:GLU27 4.2 30.4 1.0
CG F:GLU62 4.3 27.7 1.0
CD2 F:HIS65 4.3 39.0 1.0
HB3 F:GLU27 4.3 30.1 1.0
HG11 F:VAL110 4.3 30.4 1.0
CG F:GLU27 4.4 30.5 1.0
HG13 F:VAL110 4.4 30.4 1.0
HG22 F:VAL110 4.4 31.2 1.0
HB3 F:GLU62 4.5 28.4 1.0
CA F:GLU62 4.5 28.9 1.0
HD2 F:TYR137 4.5 31.8 1.0
HE2 F:TYR137 4.6 32.2 1.0
CB F:GLU62 4.7 28.5 1.0
HB3 F:ALA30 4.7 29.4 1.0
CB F:GLU27 4.7 29.4 1.0
HG3 F:GLU27 4.8 30.5 1.0
HG3 F:GLU62 4.8 29.2 1.0
HG2 F:GLU62 4.8 29.2 1.0
HE2 F:HIS65 4.9 39.5 0.0
CD F:GLN141 4.9 41.8 1.0
CA F:GLU27 5.0 31.3 1.0
O F:GLU62 5.0 29.3 1.0
HG2 F:GLU27 5.0 30.5 1.0

Iron binding site 8 out of 14 in 8pp4

Go back to Iron Binding Sites List in 8pp4
Iron binding site 8 out of 14 in the Binary Crystal Structure of Positively Supercharged Ferritin Variant Ftn(Pos) and Reduced Charge Negatively Supercharged Ferritin Variant Ftn(Neg)-M3 (Mg Formate Condition)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Binary Crystal Structure of Positively Supercharged Ferritin Variant Ftn(Pos) and Reduced Charge Negatively Supercharged Ferritin Variant Ftn(Neg)-M3 (Mg Formate Condition) within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Fe201

b:44.5
occ:1.00
 HD1 G:HIS65 1.5 39.2 0.0
O G:HOH317 2.0 36.9 1.0
OE1 G:GLU62 2.0 37.4 1.0
OE1 G:GLU27 2.1 38.6 1.0
ND1 G:HIS65 2.3 39.2 1.0
O G:HOH328 2.4 36.9 1.0
CD G:GLU62 2.9 35.9 1.0
CD G:GLU27 3.0 35.4 1.0
OE2 G:GLU62 3.2 40.6 1.0
CE1 G:HIS65 3.3 42.2 1.0
CG G:HIS65 3.3 37.7 1.0
OE2 G:GLU27 3.3 35.2 1.0
HB2 G:HIS65 3.3 35.0 1.0
HG12 G:VAL110 3.3 34.5 1.0
HB3 G:HIS65 3.4 35.0 1.0
HE1 G:HIS65 3.4 40.7 1.0
CB G:HIS65 3.6 34.6 1.0
HA G:GLU62 3.6 34.6 1.0
OE1 G:GLN141 4.0 44.1 1.0
HA G:GLU27 4.1 34.6 1.0
O G:HOH339 4.1 57.5 1.0
CG1 G:VAL110 4.3 34.7 1.0
HB3 G:GLU27 4.3 35.2 1.0
CG G:GLU62 4.3 35.3 1.0
CG G:GLU27 4.3 34.9 1.0
NE2 G:HIS65 4.4 39.8 1.0
HB3 G:GLU62 4.4 34.4 1.0
CD2 G:HIS65 4.5 37.3 1.0
CA G:GLU62 4.5 34.6 1.0
HG11 G:VAL110 4.5 34.5 1.0
HG22 G:VAL110 4.5 34.8 1.0
HD2 G:TYR137 4.6 37.0 1.0
HE2 G:TYR137 4.6 36.9 1.0
HB3 G:ALA30 4.6 34.6 1.0
CB G:GLU62 4.6 33.8 1.0
HG13 G:VAL110 4.7 34.5 1.0
CB G:GLU27 4.7 35.4 1.0
HG3 G:GLU27 4.7 35.1 1.0
HG3 G:GLU62 4.8 35.1 1.0
O G:HOH346 4.9 49.2 1.0
HG2 G:GLU62 4.9 35.1 1.0
CA G:GLU27 4.9 35.1 1.0
HD12 G:LEU114 4.9 40.5 1.0
O G:GLU62 5.0 34.7 1.0
CD G:GLN141 5.0 37.1 1.0

Iron binding site 9 out of 14 in 8pp4

Go back to Iron Binding Sites List in 8pp4
Iron binding site 9 out of 14 in the Binary Crystal Structure of Positively Supercharged Ferritin Variant Ftn(Pos) and Reduced Charge Negatively Supercharged Ferritin Variant Ftn(Neg)-M3 (Mg Formate Condition)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Binary Crystal Structure of Positively Supercharged Ferritin Variant Ftn(Pos) and Reduced Charge Negatively Supercharged Ferritin Variant Ftn(Neg)-M3 (Mg Formate Condition) within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Fe201

b:46.4
occ:1.00
 HD1 H:HIS65 1.5 42.4 0.0
OE1 H:GLU27 2.0 41.5 1.0
OE1 H:GLU62 2.0 38.3 1.0
O H:HOH308 2.2 50.0 1.0
ND1 H:HIS65 2.3 41.8 1.0
O H:HOH328 2.3 38.8 1.0
CD H:GLU27 2.9 38.8 1.0
CD H:GLU62 3.0 39.1 1.0
CE1 H:HIS65 3.2 42.1 1.0
OE2 H:GLU62 3.2 46.0 1.0
OE2 H:GLU27 3.3 35.7 1.0
CG H:HIS65 3.3 41.2 1.0
HG12 H:VAL110 3.3 39.5 1.0
HB3 H:HIS65 3.3 37.6 1.0
HB2 H:HIS65 3.4 37.6 1.0
HE1 H:HIS65 3.4 41.1 1.0
CB H:HIS65 3.5 36.7 1.0
HA H:GLU62 3.7 33.9 1.0
OE1 H:GLN141 3.9 43.0 1.0
O H:HOH337 4.1 51.1 1.0
HB3 H:GLU27 4.2 34.3 1.0
CG1 H:VAL110 4.2 40.5 1.0
HA H:GLU27 4.2 34.1 1.0
CG H:GLU27 4.3 36.0 1.0
CG H:GLU62 4.3 34.1 1.0
NE2 H:HIS65 4.4 38.6 1.0
CD2 H:HIS65 4.4 42.7 1.0
HG11 H:VAL110 4.4 39.5 1.0
HD2 H:TYR137 4.4 35.7 1.0
HE2 H:TYR137 4.4 36.5 1.0
HG13 H:VAL110 4.5 39.5 1.0
CA H:GLU62 4.6 34.9 1.0
HB3 H:GLU62 4.6 33.4 1.0
CB H:GLU27 4.6 33.2 1.0
HB3 H:ALA30 4.6 34.4 1.0
HG22 H:VAL110 4.7 39.5 1.0
HG3 H:GLU27 4.7 35.9 1.0
CB H:GLU62 4.8 32.5 1.0
HG3 H:GLU62 4.9 34.8 1.0
HG2 H:GLU27 4.9 35.9 1.0
HG2 H:GLU62 4.9 34.8 1.0
HD12 H:LEU114 4.9 36.3 1.0
CA H:GLU27 4.9 34.9 1.0
OE1 H:GLU107 5.0 43.8 1.0
CD H:GLN141 5.0 39.4 1.0

Iron binding site 10 out of 14 in 8pp4

Go back to Iron Binding Sites List in 8pp4
Iron binding site 10 out of 14 in the Binary Crystal Structure of Positively Supercharged Ferritin Variant Ftn(Pos) and Reduced Charge Negatively Supercharged Ferritin Variant Ftn(Neg)-M3 (Mg Formate Condition)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Binary Crystal Structure of Positively Supercharged Ferritin Variant Ftn(Pos) and Reduced Charge Negatively Supercharged Ferritin Variant Ftn(Neg)-M3 (Mg Formate Condition) within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Fe201

b:45.7
occ:1.00
 HD1 I:HIS65 1.4 38.8 0.0
OE1 I:GLU62 1.9 35.8 1.0
OE1 I:GLU27 2.1 38.0 1.0
O I:HOH334 2.2 39.6 1.0
ND1 I:HIS65 2.3 38.9 1.0
O I:HOH302 2.3 39.3 1.0
CD I:GLU62 2.8 36.4 1.0
CD I:GLU27 3.0 33.6 1.0
OE2 I:GLU62 3.1 44.5 1.0
CE1 I:HIS65 3.2 44.9 1.0
CG I:HIS65 3.3 37.0 1.0
HG12 I:VAL110 3.3 35.0 1.0
OE2 I:GLU27 3.3 34.4 1.0
HB2 I:HIS65 3.3 34.6 1.0
HB3 I:HIS65 3.3 34.6 1.0
HE1 I:HIS65 3.4 42.3 1.0
CB I:HIS65 3.5 34.4 1.0
HA I:GLU62 3.6 35.5 1.0
OE1 I:GLN141 4.1 39.6 1.0
O I:HOH326 4.2 52.5 1.0
CG1 I:VAL110 4.2 36.2 1.0
CG I:GLU62 4.2 35.1 1.0
HA I:GLU27 4.2 33.3 1.0
NE2 I:HIS65 4.4 41.4 1.0
CG I:GLU27 4.4 31.4 1.0
CD2 I:HIS65 4.4 37.7 1.0
HB3 I:GLU62 4.4 35.5 1.0
HG11 I:VAL110 4.4 35.0 1.0
CA I:GLU62 4.5 35.9 1.0
HD2 I:TYR137 4.5 33.4 1.0
HB3 I:GLU27 4.5 31.5 1.0
HE2 I:TYR137 4.5 33.5 1.0
HB3 I:ALA30 4.5 33.9 1.0
HG13 I:VAL110 4.6 35.0 1.0
CB I:GLU62 4.6 35.6 1.0
O I:HOH315 4.7 54.4 1.0
HG3 I:GLU27 4.7 31.6 1.0
HG22 I:VAL110 4.7 33.2 1.0
HG2 I:GLU62 4.7 35.5 1.0
HG3 I:GLU62 4.8 35.5 1.0
CB I:GLU27 4.9 30.3 1.0
HB1 I:ALA30 5.0 33.9 1.0
HD12 I:LEU114 5.0 40.8 1.0

Reference:

L.Lang, H.Bohler, H.Wagler, T.Beck. Assembly Requirements For the Construction of Large-Scale Binary Protein Structures. Biomacromolecules 2023.
ISSN: ESSN 1526-4602
PubMed: 38059469
DOI: 10.1021/ACS.BIOMAC.3C00891
Page generated: Sat Aug 10 13:08:50 2024

Last articles

Mg in 4Y52
Mg in 4Y30
Mg in 4Y2V
Mg in 4Y2X
Mg in 4Y2Y
Mg in 4Y2U
Mg in 4Y2T
Mg in 4Y2Q
Mg in 4Y2R
Mg in 4Y2S
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy