Iron in PDB 8pty: Cryo-Em Structure of Human ELP123 in Complex with 5'-Deoxyadenosine and Methionine

The binding sites of Iron atom in the Cryo-Em Structure of Human ELP123 in Complex with 5'-Deoxyadenosine and Methionine (pdb code 8pty). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the Cryo-Em Structure of Human ELP123 in Complex with 5'-Deoxyadenosine and Methionine, PDB code: 8pty:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in the Cryo-Em Structure of Human ELP123 in Complex with 5'-Deoxyadenosine and Methionine


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Cryo-Em Structure of Human ELP123 in Complex with 5'-Deoxyadenosine and Methionine within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe601 b:189.0 occ:1.00 FE1 C:SF4601 0.0 189.0 1.0 SG C:CYS112 2.3 185.2 1.0 S2 C:SF4601 2.3 189.0 1.0 S3 C:SF4601 2.3 189.0 1.0 S4 C:SF4601 2.3 189.0 1.0 FE2 C:SF4601 2.7 189.0 1.0 FE4 C:SF4601 2.7 189.0 1.0 FE3 C:SF4601 2.7 189.0 1.0 CB C:CYS112 2.8 185.2 1.0 OG C:SER126 3.4 180.0 1.0 S1 C:SF4601 3.9 189.0 1.0 CA C:CYS112 4.2 185.2 1.0 CG C:GLN125 4.2 168.9 1.0 SD C:MET603 4.3 158.2 1.0 SG C:CYS99 4.6 156.4 1.0 SG C:CYS109 4.8 173.1 1.0 CB C:SER126 4.8 180.0 1.0 N C:MET603 4.8 158.2 1.0 CD C:GLN125 4.8 168.9 1.0 CB C:CYS109 4.9 173.1 1.0 OE1 C:GLN125 5.0 168.9 1.0

Iron binding site 2 out of 4 in the Cryo-Em Structure of Human ELP123 in Complex with 5'-Deoxyadenosine and Methionine


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Cryo-Em Structure of Human ELP123 in Complex with 5'-Deoxyadenosine and Methionine within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe601 b:189.0 occ:1.00 FE2 C:SF4601 0.0 189.0 1.0 S3 C:SF4601 2.3 189.0 1.0 S4 C:SF4601 2.3 189.0 1.0 S1 C:SF4601 2.3 189.0 1.0 N C:MET603 2.7 158.2 1.0 O C:MET603 2.7 158.2 1.0 FE4 C:SF4601 2.7 189.0 1.0 FE1 C:SF4601 2.7 189.0 1.0 FE3 C:SF4601 2.7 189.0 1.0 SD C:MET603 3.2 158.2 1.0 C C:MET603 3.5 158.2 1.0 CA C:MET603 3.6 158.2 1.0 S2 C:SF4601 3.9 189.0 1.0 NH1 C:ARG260 4.1 155.3 1.0 CG C:MET603 4.1 158.2 1.0 CB C:MET603 4.4 158.2 1.0 CE C:MET603 4.6 158.2 1.0 OXT C:MET603 4.6 158.2 1.0 SG C:CYS109 4.6 173.1 1.0 NE C:ARG223 4.7 152.1 1.0 SG C:CYS99 4.8 156.4 1.0 OG C:SER126 4.8 180.0 1.0 SG C:CYS112 4.8 185.2 1.0 CZ C:ARG260 5.0 155.3 1.0

Iron binding site 3 out of 4 in the Cryo-Em Structure of Human ELP123 in Complex with 5'-Deoxyadenosine and Methionine


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Cryo-Em Structure of Human ELP123 in Complex with 5'-Deoxyadenosine and Methionine within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe601 b:189.0 occ:1.00 FE3 C:SF4601 0.0 189.0 1.0 SG C:CYS99 2.3 156.4 1.0 S4 C:SF4601 2.3 189.0 1.0 S1 C:SF4601 2.3 189.0 1.0 S2 C:SF4601 2.3 189.0 1.0 FE4 C:SF4601 2.7 189.0 1.0 FE2 C:SF4601 2.7 189.0 1.0 FE1 C:SF4601 2.7 189.0 1.0 CB C:CYS99 3.4 156.4 1.0 S3 C:SF4601 3.9 189.0 1.0 N C:MET603 4.1 158.2 1.0 CG C:GLN125 4.3 168.9 1.0 CE1 C:HIS101 4.3 165.8 1.0 NE C:ARG223 4.6 152.1 1.0 SG C:CYS112 4.7 185.2 1.0 CA C:CYS99 4.8 156.4 1.0 SG C:CYS109 4.8 173.1 1.0 CD C:GLN125 4.9 168.9 1.0

Iron binding site 4 out of 4 in the Cryo-Em Structure of Human ELP123 in Complex with 5'-Deoxyadenosine and Methionine


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Cryo-Em Structure of Human ELP123 in Complex with 5'-Deoxyadenosine and Methionine within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe601 b:189.0 occ:1.00 FE4 C:SF4601 0.0 189.0 1.0 SG C:CYS109 2.2 173.1 1.0 S2 C:SF4601 2.3 189.0 1.0 S3 C:SF4601 2.3 189.0 1.0 S1 C:SF4601 2.3 189.0 1.0 FE2 C:SF4601 2.7 189.0 1.0 FE3 C:SF4601 2.7 189.0 1.0 FE1 C:SF4601 2.7 189.0 1.0 CB C:CYS109 3.1 173.1 1.0 S4 C:SF4601 3.9 189.0 1.0 N C:CYS109 3.9 173.1 1.0 CE1 C:HIS101 4.0 165.8 1.0 CA C:CYS109 4.2 173.1 1.0 CB C:CYS112 4.3 185.2 1.0 NH1 C:ARG260 4.4 155.3 1.0 NE2 C:HIS101 4.4 165.8 1.0 SG C:CYS112 4.7 185.2 1.0 O C:MET603 4.8 158.2 1.0 SG C:CYS99 4.8 156.4 1.0 NH2 C:ARG223 4.9 152.1 1.0 NE C:ARG223 4.9 152.1 1.0

N.Abbassi, M.Jaciuk, T.-Y.Lin, S.Glatt. Cryo-Em Structure of Human ELP123 in Complex with 5'-Deoxyadenosine and Methionine To Be Published.