Iron in PDB 8pu0: Cryo-Em Structure of Human ELP123 in Complex with Trna, Desulpho-Coa, 5'-Deoxyadenosine and Methionine

The binding sites of Iron atom in the Cryo-Em Structure of Human ELP123 in Complex with Trna, Desulpho-Coa, 5'-Deoxyadenosine and Methionine (pdb code 8pu0). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the Cryo-Em Structure of Human ELP123 in Complex with Trna, Desulpho-Coa, 5'-Deoxyadenosine and Methionine, PDB code: 8pu0:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in the Cryo-Em Structure of Human ELP123 in Complex with Trna, Desulpho-Coa, 5'-Deoxyadenosine and Methionine


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Cryo-Em Structure of Human ELP123 in Complex with Trna, Desulpho-Coa, 5'-Deoxyadenosine and Methionine within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe602 b:447.4 occ:1.00 FE1 C:SF4602 0.0 447.4 1.0 S3 C:SF4602 2.3 447.4 1.0 S2 C:SF4602 2.3 447.4 1.0 S4 C:SF4602 2.3 447.4 1.0 OXT C:MET604 2.6 350.5 1.0 N C:MET604 2.7 350.5 1.0 FE4 C:SF4602 2.7 447.4 1.0 FE2 C:SF4602 2.7 447.4 1.0 FE3 C:SF4602 2.7 447.4 1.0 SD C:MET604 3.1 350.5 1.0 C C:MET604 3.4 350.5 1.0 CA C:MET604 3.6 350.5 1.0 S1 C:SF4602 3.9 447.4 1.0 NH1 C:ARG260 4.0 240.2 1.0 CG C:MET604 4.1 350.5 1.0 CB C:MET604 4.4 350.5 1.0 CE C:MET604 4.4 350.5 1.0 O2' C:5AD603 4.4 321.5 1.0 OG C:SER126 4.5 340.1 1.0 O C:MET604 4.5 350.5 1.0 NH2 C:ARG260 4.5 240.2 1.0 CZ C:ARG260 4.6 240.2 1.0 SG C:CYS109 4.6 354.9 1.0 SG C:CYS112 4.8 338.6 1.0 C2' C:5AD603 4.8 321.5 1.0 SG C:CYS99 4.9 322.4 1.0

Iron binding site 2 out of 4 in the Cryo-Em Structure of Human ELP123 in Complex with Trna, Desulpho-Coa, 5'-Deoxyadenosine and Methionine


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Cryo-Em Structure of Human ELP123 in Complex with Trna, Desulpho-Coa, 5'-Deoxyadenosine and Methionine within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe602 b:447.4 occ:1.00 FE2 C:SF4602 0.0 447.4 1.0 SG C:CYS109 2.3 354.9 1.0 S1 C:SF4602 2.3 447.4 1.0 S3 C:SF4602 2.3 447.4 1.0 S4 C:SF4602 2.3 447.4 1.0 FE4 C:SF4602 2.7 447.4 1.0 FE1 C:SF4602 2.7 447.4 1.0 FE3 C:SF4602 2.7 447.4 1.0 O C:ILE108 3.3 341.0 1.0 NH1 C:ARG260 3.4 240.2 1.0 CB C:CYS109 3.4 354.9 1.0 CE1 C:HIS101 3.9 303.1 1.0 S2 C:SF4602 3.9 447.4 1.0 C C:ILE108 4.0 341.0 1.0 NE2 C:HIS101 4.0 303.1 1.0 N C:CYS109 4.4 354.9 1.0 CA C:CYS109 4.4 354.9 1.0 SG C:CYS112 4.4 338.6 1.0 CZ C:ARG260 4.5 240.2 1.0 OXT C:MET604 4.5 350.5 1.0 CB C:CYS112 4.6 338.6 1.0 SG C:CYS99 4.8 322.4 1.0 ND1 C:HIS101 4.9 303.1 1.0 CA C:ILE108 5.0 341.0 1.0

Iron binding site 3 out of 4 in the Cryo-Em Structure of Human ELP123 in Complex with Trna, Desulpho-Coa, 5'-Deoxyadenosine and Methionine


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Cryo-Em Structure of Human ELP123 in Complex with Trna, Desulpho-Coa, 5'-Deoxyadenosine and Methionine within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe602 b:447.4 occ:1.00 FE3 C:SF4602 0.0 447.4 1.0 SG C:CYS99 2.3 322.4 1.0 S1 C:SF4602 2.3 447.4 1.0 S2 C:SF4602 2.3 447.4 1.0 S4 C:SF4602 2.3 447.4 1.0 FE4 C:SF4602 2.7 447.4 1.0 FE1 C:SF4602 2.7 447.4 1.0 FE2 C:SF4602 2.7 447.4 1.0 CB C:CYS99 3.6 322.4 1.0 CE1 C:HIS101 3.7 303.1 1.0 S3 C:SF4602 3.9 447.4 1.0 CG C:GLN125 3.9 356.6 1.0 N C:MET604 3.9 350.5 1.0 NE2 C:HIS101 4.0 303.1 1.0 OG1 C:THR173 4.6 264.0 1.0 CD C:GLN125 4.7 356.6 1.0 SG C:CYS112 4.8 338.6 1.0 OXT C:MET604 4.8 350.5 1.0 O C:ILE108 4.9 341.0 1.0 ND1 C:HIS101 4.9 303.1 1.0 CA C:CYS99 4.9 322.4 1.0 SG C:CYS109 5.0 354.9 1.0 CB C:GLN125 5.0 356.6 1.0

Iron binding site 4 out of 4 in the Cryo-Em Structure of Human ELP123 in Complex with Trna, Desulpho-Coa, 5'-Deoxyadenosine and Methionine


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Cryo-Em Structure of Human ELP123 in Complex with Trna, Desulpho-Coa, 5'-Deoxyadenosine and Methionine within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe602 b:447.4 occ:1.00 FE4 C:SF4602 0.0 447.4 1.0 SG C:CYS112 2.2 338.6 1.0 S1 C:SF4602 2.3 447.4 1.0 S3 C:SF4602 2.3 447.4 1.0 S2 C:SF4602 2.3 447.4 1.0 FE1 C:SF4602 2.7 447.4 1.0 FE2 C:SF4602 2.7 447.4 1.0 FE3 C:SF4602 2.7 447.4 1.0 OG C:SER126 2.9 340.1 1.0 CB C:CYS112 3.4 338.6 1.0 CG C:GLN125 3.4 356.6 1.0 NE2 C:GLN125 3.8 356.6 1.0 CD C:GLN125 3.9 356.6 1.0 S4 C:SF4602 3.9 447.4 1.0 CB C:SER126 4.3 340.1 1.0 SG C:CYS109 4.4 354.9 1.0 SG C:CYS99 4.6 322.4 1.0 CB C:CYS109 4.6 354.9 1.0 CA C:CYS112 4.6 338.6 1.0 SD C:MET604 4.7 350.5 1.0 N C:SER126 4.8 340.1 1.0 CB C:GLN125 4.8 356.6 1.0 OE1 C:GLN125 4.8 356.6 1.0 N C:MET604 4.9 350.5 1.0

N.Abbassi, M.Jaciuk, T.-Y.Lin, S.Glatt. Cryo-Em Structure of Human ELP123 in Complex with Trna, Desulpho-Coa, 5'-Deoxyadenosine and Methionine To Be Published.