Iron in PDB 8tu8: Cryo-Em Structure of Apoferritin Collected By Serialem on Glacios at 2.1 Angstrom Resolution
Enzymatic activity of Cryo-Em Structure of Apoferritin Collected By Serialem on Glacios at 2.1 Angstrom Resolution
All present enzymatic activity of Cryo-Em Structure of Apoferritin Collected By Serialem on Glacios at 2.1 Angstrom Resolution:
1.16.3.1;
Other elements in 8tu8:
The structure of Cryo-Em Structure of Apoferritin Collected By Serialem on Glacios at 2.1 Angstrom Resolution also contains other interesting chemical elements:
Iron Binding Sites:
The binding sites of Iron atom in the Cryo-Em Structure of Apoferritin Collected By Serialem on Glacios at 2.1 Angstrom Resolution
(pdb code 8tu8). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 6 binding sites of Iron where determined in the
Cryo-Em Structure of Apoferritin Collected By Serialem on Glacios at 2.1 Angstrom Resolution, PDB code: 8tu8:
Jump to Iron binding site number:
1;
2;
3;
4;
5;
6;
Iron binding site 1 out
of 6 in 8tu8
Go back to
Iron Binding Sites List in 8tu8
Iron binding site 1 out
of 6 in the Cryo-Em Structure of Apoferritin Collected By Serialem on Glacios at 2.1 Angstrom Resolution
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Cryo-Em Structure of Apoferritin Collected By Serialem on Glacios at 2.1 Angstrom Resolution within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe201
b:31.9
occ:1.00
|
HE2
|
E:HIS173
|
2.2
|
25.1
|
1.0
|
|
HE2
|
W:HIS173
|
2.2
|
25.1
|
1.0
|
|
HE2
|
V:HIS173
|
2.2
|
25.1
|
1.0
|
|
HE2
|
A:HIS173
|
2.2
|
25.1
|
1.0
|
|
NE2
|
E:HIS173
|
3.0
|
25.1
|
1.0
|
|
NE2
|
W:HIS173
|
3.0
|
25.1
|
1.0
|
|
NE2
|
V:HIS173
|
3.0
|
25.1
|
1.0
|
|
NE2
|
A:HIS173
|
3.0
|
25.1
|
1.0
|
|
HD22
|
V:LEU169
|
3.3
|
25.5
|
1.0
|
|
HD22
|
A:LEU169
|
3.3
|
25.4
|
1.0
|
|
HD22
|
W:LEU169
|
3.3
|
25.4
|
1.0
|
|
HD22
|
E:LEU169
|
3.3
|
25.4
|
1.0
|
|
HE1
|
E:HIS173
|
3.5
|
25.1
|
1.0
|
|
HE1
|
W:HIS173
|
3.6
|
25.1
|
1.0
|
|
HE1
|
V:HIS173
|
3.6
|
25.1
|
1.0
|
|
HE1
|
A:HIS173
|
3.6
|
25.1
|
1.0
|
|
HD21
|
A:LEU169
|
3.6
|
25.4
|
1.0
|
|
HD21
|
W:LEU169
|
3.6
|
25.4
|
1.0
|
|
HD21
|
E:LEU169
|
3.6
|
25.4
|
1.0
|
|
HD21
|
V:LEU169
|
3.6
|
25.5
|
1.0
|
|
CE1
|
E:HIS173
|
3.7
|
25.1
|
1.0
|
|
CE1
|
W:HIS173
|
3.7
|
25.1
|
1.0
|
|
CE1
|
V:HIS173
|
3.7
|
25.1
|
1.0
|
|
CE1
|
A:HIS173
|
3.7
|
25.1
|
1.0
|
|
HD11
|
E:LEU169
|
3.7
|
25.4
|
1.0
|
|
HD13
|
W:LEU169
|
3.8
|
25.4
|
1.0
|
|
HD13
|
A:LEU169
|
3.8
|
25.4
|
1.0
|
|
HD13
|
V:LEU169
|
3.9
|
25.5
|
1.0
|
|
CD2
|
V:LEU169
|
3.9
|
25.5
|
1.0
|
|
CD2
|
A:LEU169
|
3.9
|
25.4
|
1.0
|
|
CD2
|
W:LEU169
|
3.9
|
25.4
|
1.0
|
|
CD2
|
E:LEU169
|
3.9
|
25.4
|
1.0
|
|
CD2
|
W:HIS173
|
4.1
|
25.1
|
1.0
|
|
CD2
|
V:HIS173
|
4.2
|
25.1
|
1.0
|
|
CD2
|
A:HIS173
|
4.2
|
25.1
|
1.0
|
|
CD2
|
E:HIS173
|
4.2
|
25.1
|
1.0
|
|
HD2
|
A:HIS173
|
4.4
|
25.1
|
1.0
|
|
HD2
|
V:HIS173
|
4.4
|
25.1
|
1.0
|
|
HD2
|
W:HIS173
|
4.4
|
25.1
|
1.0
|
|
HD2
|
E:HIS173
|
4.4
|
25.1
|
1.0
|
|
HD11
|
A:LEU169
|
4.5
|
25.4
|
1.0
|
|
CD1
|
E:LEU169
|
4.5
|
25.4
|
1.0
|
|
HD11
|
W:LEU169
|
4.5
|
25.4
|
1.0
|
|
CD1
|
W:LEU169
|
4.5
|
25.4
|
1.0
|
|
CD1
|
A:LEU169
|
4.5
|
25.4
|
1.0
|
|
HD11
|
V:LEU169
|
4.5
|
25.5
|
1.0
|
|
CD1
|
V:LEU169
|
4.5
|
25.5
|
1.0
|
|
HD12
|
E:LEU169
|
4.5
|
25.4
|
1.0
|
|
HD23
|
V:LEU169
|
4.6
|
25.5
|
1.0
|
|
HD23
|
A:LEU169
|
4.6
|
25.4
|
1.0
|
|
HD23
|
W:LEU169
|
4.6
|
25.4
|
1.0
|
|
HD23
|
E:LEU169
|
4.6
|
25.4
|
1.0
|
|
CG
|
E:LEU169
|
4.8
|
25.4
|
1.0
|
|
CG
|
A:LEU169
|
4.8
|
25.4
|
1.0
|
|
CG
|
W:LEU169
|
4.8
|
25.4
|
1.0
|
|
CG
|
V:LEU169
|
4.8
|
25.5
|
1.0
|
|
HB3
|
E:LEU169
|
4.9
|
25.4
|
1.0
|
|
HB3
|
V:LEU169
|
4.9
|
25.5
|
1.0
|
|
HB3
|
A:LEU169
|
4.9
|
25.4
|
1.0
|
|
ND1
|
E:HIS173
|
4.9
|
25.1
|
1.0
|
|
HB3
|
W:LEU169
|
4.9
|
25.4
|
1.0
|
|
ND1
|
W:HIS173
|
4.9
|
25.1
|
1.0
|
|
ND1
|
V:HIS173
|
4.9
|
25.1
|
1.0
|
|
ND1
|
A:HIS173
|
4.9
|
25.1
|
1.0
|
|
Iron binding site 2 out
of 6 in 8tu8
Go back to
Iron Binding Sites List in 8tu8
Iron binding site 2 out
of 6 in the Cryo-Em Structure of Apoferritin Collected By Serialem on Glacios at 2.1 Angstrom Resolution
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Cryo-Em Structure of Apoferritin Collected By Serialem on Glacios at 2.1 Angstrom Resolution within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe201
b:31.7
occ:1.00
|
HE2
|
P:HIS173
|
2.2
|
25.1
|
1.0
|
|
HE2
|
H:HIS173
|
2.2
|
25.1
|
1.0
|
|
HE2
|
O:HIS173
|
2.2
|
25.2
|
1.0
|
|
HE2
|
B:HIS173
|
2.2
|
25.0
|
1.0
|
|
NE2
|
P:HIS173
|
3.0
|
25.1
|
1.0
|
|
NE2
|
H:HIS173
|
3.0
|
25.1
|
1.0
|
|
NE2
|
O:HIS173
|
3.0
|
25.2
|
1.0
|
|
NE2
|
B:HIS173
|
3.0
|
25.0
|
1.0
|
|
HD22
|
H:LEU169
|
3.3
|
25.5
|
1.0
|
|
HD22
|
B:LEU169
|
3.3
|
25.3
|
1.0
|
|
HD22
|
O:LEU169
|
3.3
|
25.5
|
1.0
|
|
HD22
|
P:LEU169
|
3.3
|
25.5
|
1.0
|
|
HE1
|
P:HIS173
|
3.5
|
25.1
|
1.0
|
|
HE1
|
O:HIS173
|
3.6
|
25.2
|
1.0
|
|
HD21
|
O:LEU169
|
3.6
|
25.5
|
1.0
|
|
HD21
|
H:LEU169
|
3.6
|
25.5
|
1.0
|
|
HD21
|
B:LEU169
|
3.6
|
25.3
|
1.0
|
|
HD21
|
P:LEU169
|
3.6
|
25.5
|
1.0
|
|
HE1
|
B:HIS173
|
3.6
|
25.0
|
1.0
|
|
HE1
|
H:HIS173
|
3.6
|
25.1
|
1.0
|
|
CE1
|
P:HIS173
|
3.6
|
25.1
|
1.0
|
|
CE1
|
O:HIS173
|
3.7
|
25.2
|
1.0
|
|
CE1
|
H:HIS173
|
3.7
|
25.1
|
1.0
|
|
CE1
|
B:HIS173
|
3.7
|
25.0
|
1.0
|
|
HD13
|
P:LEU169
|
3.8
|
25.5
|
1.0
|
|
HD13
|
B:LEU169
|
3.8
|
25.3
|
1.0
|
|
HD13
|
H:LEU169
|
3.8
|
25.5
|
1.0
|
|
HD13
|
O:LEU169
|
3.8
|
25.5
|
1.0
|
|
CD2
|
O:LEU169
|
3.9
|
25.5
|
1.0
|
|
CD2
|
H:LEU169
|
3.9
|
25.5
|
1.0
|
|
CD2
|
B:LEU169
|
3.9
|
25.3
|
1.0
|
|
CD2
|
P:LEU169
|
3.9
|
25.5
|
1.0
|
|
CD2
|
H:HIS173
|
4.1
|
25.1
|
1.0
|
|
CD2
|
P:HIS173
|
4.1
|
25.1
|
1.0
|
|
CD2
|
O:HIS173
|
4.2
|
25.2
|
1.0
|
|
CD2
|
B:HIS173
|
4.2
|
25.0
|
1.0
|
|
HD2
|
H:HIS173
|
4.4
|
25.1
|
1.0
|
|
HD2
|
B:HIS173
|
4.4
|
25.0
|
1.0
|
|
HD2
|
P:HIS173
|
4.4
|
25.1
|
1.0
|
|
HD2
|
O:HIS173
|
4.4
|
25.2
|
1.0
|
|
HD11
|
O:LEU169
|
4.5
|
25.5
|
1.0
|
|
HD11
|
B:LEU169
|
4.5
|
25.3
|
1.0
|
|
HD11
|
H:LEU169
|
4.5
|
25.5
|
1.0
|
|
CD1
|
B:LEU169
|
4.5
|
25.3
|
1.0
|
|
CD1
|
O:LEU169
|
4.5
|
25.5
|
1.0
|
|
CD1
|
P:LEU169
|
4.5
|
25.5
|
1.0
|
|
CD1
|
H:LEU169
|
4.5
|
25.5
|
1.0
|
|
HD11
|
P:LEU169
|
4.5
|
25.5
|
1.0
|
|
HD23
|
O:LEU169
|
4.6
|
25.5
|
1.0
|
|
HD23
|
H:LEU169
|
4.6
|
25.5
|
1.0
|
|
HD23
|
B:LEU169
|
4.6
|
25.3
|
1.0
|
|
HD23
|
P:LEU169
|
4.6
|
25.5
|
1.0
|
|
CG
|
B:LEU169
|
4.8
|
25.3
|
1.0
|
|
CG
|
O:LEU169
|
4.8
|
25.5
|
1.0
|
|
CG
|
H:LEU169
|
4.8
|
25.5
|
1.0
|
|
CG
|
P:LEU169
|
4.8
|
25.5
|
1.0
|
|
ND1
|
P:HIS173
|
4.9
|
25.1
|
1.0
|
|
HB3
|
B:LEU169
|
4.9
|
25.3
|
1.0
|
|
HB3
|
H:LEU169
|
4.9
|
25.5
|
1.0
|
|
HB3
|
P:LEU169
|
4.9
|
25.5
|
1.0
|
|
HB3
|
O:LEU169
|
4.9
|
25.5
|
1.0
|
|
ND1
|
O:HIS173
|
4.9
|
25.2
|
1.0
|
|
ND1
|
H:HIS173
|
4.9
|
25.1
|
1.0
|
|
ND1
|
B:HIS173
|
4.9
|
25.0
|
1.0
|
|
Iron binding site 3 out
of 6 in 8tu8
Go back to
Iron Binding Sites List in 8tu8
Iron binding site 3 out
of 6 in the Cryo-Em Structure of Apoferritin Collected By Serialem on Glacios at 2.1 Angstrom Resolution
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Cryo-Em Structure of Apoferritin Collected By Serialem on Glacios at 2.1 Angstrom Resolution within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe201
b:31.1
occ:1.00
|
HE2
|
G:HIS173
|
2.2
|
25.1
|
1.0
|
|
HE2
|
C:HIS173
|
2.2
|
25.2
|
1.0
|
|
HE2
|
K:HIS173
|
2.2
|
25.1
|
1.0
|
|
HE2
|
T:HIS173
|
2.2
|
25.2
|
1.0
|
|
NE2
|
G:HIS173
|
3.0
|
25.1
|
1.0
|
|
NE2
|
C:HIS173
|
3.0
|
25.2
|
1.0
|
|
NE2
|
K:HIS173
|
3.0
|
25.1
|
1.0
|
|
NE2
|
T:HIS173
|
3.0
|
25.2
|
1.0
|
|
HD22
|
T:LEU169
|
3.2
|
25.5
|
1.0
|
|
HD22
|
K:LEU169
|
3.3
|
25.4
|
1.0
|
|
HD22
|
C:LEU169
|
3.3
|
25.4
|
1.0
|
|
HD22
|
G:LEU169
|
3.3
|
25.4
|
1.0
|
|
HE1
|
C:HIS173
|
3.5
|
25.2
|
1.0
|
|
HE1
|
K:HIS173
|
3.5
|
25.1
|
1.0
|
|
HE1
|
T:HIS173
|
3.5
|
25.2
|
1.0
|
|
HE1
|
G:HIS173
|
3.5
|
25.1
|
1.0
|
|
HD21
|
G:LEU169
|
3.6
|
25.4
|
1.0
|
|
HD21
|
K:LEU169
|
3.6
|
25.4
|
1.0
|
|
HD21
|
C:LEU169
|
3.6
|
25.4
|
1.0
|
|
CE1
|
C:HIS173
|
3.6
|
25.2
|
1.0
|
|
CE1
|
K:HIS173
|
3.6
|
25.1
|
1.0
|
|
CE1
|
T:HIS173
|
3.6
|
25.2
|
1.0
|
|
CE1
|
G:HIS173
|
3.6
|
25.1
|
1.0
|
|
HD21
|
T:LEU169
|
3.6
|
25.5
|
1.0
|
|
HD13
|
C:LEU169
|
3.8
|
25.4
|
1.0
|
|
HD13
|
K:LEU169
|
3.8
|
25.4
|
1.0
|
|
HD13
|
G:LEU169
|
3.8
|
25.4
|
1.0
|
|
CD2
|
T:LEU169
|
3.9
|
25.5
|
1.0
|
|
CD2
|
K:LEU169
|
3.9
|
25.4
|
1.0
|
|
CD2
|
G:LEU169
|
3.9
|
25.4
|
1.0
|
|
CD2
|
C:LEU169
|
3.9
|
25.4
|
1.0
|
|
HD13
|
T:LEU169
|
4.0
|
25.5
|
1.0
|
|
CD2
|
G:HIS173
|
4.2
|
25.1
|
1.0
|
|
CD2
|
C:HIS173
|
4.2
|
25.2
|
1.0
|
|
CD2
|
K:HIS173
|
4.2
|
25.1
|
1.0
|
|
CD2
|
T:HIS173
|
4.2
|
25.2
|
1.0
|
|
HD2
|
G:HIS173
|
4.4
|
25.1
|
1.0
|
|
HD2
|
C:HIS173
|
4.4
|
25.2
|
1.0
|
|
HD2
|
K:HIS173
|
4.4
|
25.1
|
1.0
|
|
HD2
|
T:HIS173
|
4.4
|
25.2
|
1.0
|
|
HD11
|
G:LEU169
|
4.5
|
25.4
|
1.0
|
|
HD11
|
K:LEU169
|
4.5
|
25.4
|
1.0
|
|
CD1
|
K:LEU169
|
4.5
|
25.4
|
1.0
|
|
CD1
|
G:LEU169
|
4.5
|
25.4
|
1.0
|
|
CD1
|
C:LEU169
|
4.5
|
25.4
|
1.0
|
|
HD11
|
C:LEU169
|
4.5
|
25.4
|
1.0
|
|
HD23
|
T:LEU169
|
4.5
|
25.5
|
1.0
|
|
HD11
|
T:LEU169
|
4.6
|
25.5
|
1.0
|
|
HD23
|
K:LEU169
|
4.6
|
25.4
|
1.0
|
|
CD1
|
T:LEU169
|
4.6
|
25.5
|
1.0
|
|
HD23
|
G:LEU169
|
4.6
|
25.4
|
1.0
|
|
HD23
|
C:LEU169
|
4.6
|
25.4
|
1.0
|
|
CG
|
K:LEU169
|
4.8
|
25.4
|
1.0
|
|
CG
|
G:LEU169
|
4.8
|
25.4
|
1.0
|
|
CG
|
C:LEU169
|
4.8
|
25.4
|
1.0
|
|
CG
|
T:LEU169
|
4.8
|
25.5
|
1.0
|
|
HB3
|
T:LEU169
|
4.9
|
25.5
|
1.0
|
|
ND1
|
C:HIS173
|
4.9
|
25.2
|
1.0
|
|
HB3
|
C:LEU169
|
4.9
|
25.4
|
1.0
|
|
ND1
|
G:HIS173
|
4.9
|
25.1
|
1.0
|
|
ND1
|
K:HIS173
|
4.9
|
25.1
|
1.0
|
|
ND1
|
T:HIS173
|
4.9
|
25.2
|
1.0
|
|
HB3
|
K:LEU169
|
4.9
|
25.4
|
1.0
|
|
HB3
|
G:LEU169
|
4.9
|
25.4
|
1.0
|
|
Iron binding site 4 out
of 6 in 8tu8
Go back to
Iron Binding Sites List in 8tu8
Iron binding site 4 out
of 6 in the Cryo-Em Structure of Apoferritin Collected By Serialem on Glacios at 2.1 Angstrom Resolution
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Cryo-Em Structure of Apoferritin Collected By Serialem on Glacios at 2.1 Angstrom Resolution within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Fe201
b:31.1
occ:1.00
|
HE2
|
D:HIS173
|
2.2
|
25.1
|
1.0
|
|
HE2
|
R:HIS173
|
2.2
|
25.2
|
1.0
|
|
HE2
|
L:HIS173
|
2.2
|
25.1
|
1.0
|
|
HE2
|
F:HIS173
|
2.2
|
25.2
|
1.0
|
|
NE2
|
D:HIS173
|
3.0
|
25.1
|
1.0
|
|
NE2
|
R:HIS173
|
3.0
|
25.2
|
1.0
|
|
NE2
|
F:HIS173
|
3.0
|
25.2
|
1.0
|
|
NE2
|
L:HIS173
|
3.0
|
25.1
|
1.0
|
|
HD22
|
F:LEU169
|
3.2
|
25.5
|
1.0
|
|
HD22
|
L:LEU169
|
3.2
|
25.5
|
1.0
|
|
HD22
|
D:LEU169
|
3.3
|
25.4
|
1.0
|
|
HD22
|
R:LEU169
|
3.3
|
25.5
|
1.0
|
|
HE1
|
R:HIS173
|
3.5
|
25.2
|
1.0
|
|
HE1
|
F:HIS173
|
3.5
|
25.2
|
1.0
|
|
HE1
|
L:HIS173
|
3.5
|
25.1
|
1.0
|
|
HE1
|
D:HIS173
|
3.5
|
25.1
|
1.0
|
|
HD21
|
D:LEU169
|
3.6
|
25.4
|
1.0
|
|
HD21
|
R:LEU169
|
3.6
|
25.5
|
1.0
|
|
HD21
|
L:LEU169
|
3.6
|
25.5
|
1.0
|
|
CE1
|
R:HIS173
|
3.6
|
25.2
|
1.0
|
|
CE1
|
F:HIS173
|
3.6
|
25.2
|
1.0
|
|
CE1
|
D:HIS173
|
3.6
|
25.1
|
1.0
|
|
CE1
|
L:HIS173
|
3.6
|
25.1
|
1.0
|
|
HD21
|
F:LEU169
|
3.7
|
25.5
|
1.0
|
|
HD13
|
R:LEU169
|
3.7
|
25.5
|
1.0
|
|
HD13
|
D:LEU169
|
3.8
|
25.4
|
1.0
|
|
CD2
|
L:LEU169
|
3.9
|
25.5
|
1.0
|
|
CD2
|
F:LEU169
|
3.9
|
25.5
|
1.0
|
|
CD2
|
D:LEU169
|
3.9
|
25.4
|
1.0
|
|
CD2
|
R:LEU169
|
3.9
|
25.5
|
1.0
|
|
HD13
|
F:LEU169
|
3.9
|
25.5
|
1.0
|
|
HD13
|
L:LEU169
|
4.0
|
25.5
|
1.0
|
|
CD2
|
D:HIS173
|
4.2
|
25.1
|
1.0
|
|
CD2
|
R:HIS173
|
4.2
|
25.2
|
1.0
|
|
CD2
|
L:HIS173
|
4.2
|
25.1
|
1.0
|
|
CD2
|
F:HIS173
|
4.2
|
25.2
|
1.0
|
|
HD2
|
D:HIS173
|
4.4
|
25.1
|
1.0
|
|
HD2
|
L:HIS173
|
4.4
|
25.1
|
1.0
|
|
HD2
|
R:HIS173
|
4.4
|
25.2
|
1.0
|
|
HD2
|
F:HIS173
|
4.4
|
25.2
|
1.0
|
|
CD1
|
R:LEU169
|
4.5
|
25.5
|
1.0
|
|
HD11
|
D:LEU169
|
4.5
|
25.4
|
1.0
|
|
CD1
|
D:LEU169
|
4.5
|
25.4
|
1.0
|
|
HD11
|
R:LEU169
|
4.5
|
25.5
|
1.0
|
|
HD23
|
F:LEU169
|
4.5
|
25.5
|
1.0
|
|
HD23
|
L:LEU169
|
4.5
|
25.5
|
1.0
|
|
HD11
|
L:LEU169
|
4.5
|
25.5
|
1.0
|
|
HD11
|
F:LEU169
|
4.6
|
25.5
|
1.0
|
|
CD1
|
L:LEU169
|
4.6
|
25.5
|
1.0
|
|
CD1
|
F:LEU169
|
4.6
|
25.5
|
1.0
|
|
HD23
|
D:LEU169
|
4.6
|
25.4
|
1.0
|
|
HD23
|
R:LEU169
|
4.6
|
25.5
|
1.0
|
|
CG
|
R:LEU169
|
4.8
|
25.5
|
1.0
|
|
CG
|
D:LEU169
|
4.8
|
25.4
|
1.0
|
|
CG
|
L:LEU169
|
4.8
|
25.5
|
1.0
|
|
CG
|
F:LEU169
|
4.8
|
25.5
|
1.0
|
|
HB3
|
F:LEU169
|
4.8
|
25.5
|
1.0
|
|
HB3
|
L:LEU169
|
4.9
|
25.5
|
1.0
|
|
ND1
|
R:HIS173
|
4.9
|
25.2
|
1.0
|
|
ND1
|
D:HIS173
|
4.9
|
25.1
|
1.0
|
|
ND1
|
F:HIS173
|
4.9
|
25.2
|
1.0
|
|
ND1
|
L:HIS173
|
4.9
|
25.1
|
1.0
|
|
HB3
|
R:LEU169
|
4.9
|
25.5
|
1.0
|
|
HB3
|
D:LEU169
|
4.9
|
25.4
|
1.0
|
|
Iron binding site 5 out
of 6 in 8tu8
Go back to
Iron Binding Sites List in 8tu8
Iron binding site 5 out
of 6 in the Cryo-Em Structure of Apoferritin Collected By Serialem on Glacios at 2.1 Angstrom Resolution
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of Cryo-Em Structure of Apoferritin Collected By Serialem on Glacios at 2.1 Angstrom Resolution within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
I:Fe201
b:32.8
occ:1.00
|
HE2
|
J:HIS173
|
2.2
|
25.4
|
1.0
|
|
HE2
|
M:HIS173
|
2.2
|
25.2
|
1.0
|
|
HE2
|
N:HIS173
|
2.2
|
25.4
|
1.0
|
|
HE2
|
I:HIS173
|
2.2
|
25.3
|
1.0
|
|
NE2
|
I:HIS173
|
3.0
|
25.3
|
1.0
|
|
NE2
|
N:HIS173
|
3.0
|
25.4
|
1.0
|
|
NE2
|
M:HIS173
|
3.0
|
25.2
|
1.0
|
|
NE2
|
J:HIS173
|
3.0
|
25.4
|
1.0
|
|
HD22
|
J:LEU169
|
3.2
|
25.6
|
1.0
|
|
HD22
|
M:LEU169
|
3.3
|
25.6
|
1.0
|
|
HD22
|
I:LEU169
|
3.3
|
25.5
|
1.0
|
|
HD22
|
N:LEU169
|
3.3
|
25.5
|
1.0
|
|
HE1
|
I:HIS173
|
3.5
|
25.3
|
1.0
|
|
HE1
|
N:HIS173
|
3.5
|
25.4
|
1.0
|
|
HE1
|
M:HIS173
|
3.5
|
25.2
|
1.0
|
|
HD21
|
I:LEU169
|
3.6
|
25.5
|
1.0
|
|
HD21
|
N:LEU169
|
3.6
|
25.5
|
1.0
|
|
HD21
|
M:LEU169
|
3.6
|
25.6
|
1.0
|
|
CE1
|
I:HIS173
|
3.6
|
25.3
|
1.0
|
|
CE1
|
N:HIS173
|
3.6
|
25.4
|
1.0
|
|
HD21
|
J:LEU169
|
3.7
|
25.6
|
1.0
|
|
HE1
|
J:HIS173
|
3.7
|
25.4
|
1.0
|
|
CE1
|
M:HIS173
|
3.7
|
25.2
|
1.0
|
|
CE1
|
J:HIS173
|
3.7
|
25.4
|
1.0
|
|
HD13
|
N:LEU169
|
3.7
|
25.5
|
1.0
|
|
HD13
|
I:LEU169
|
3.8
|
25.5
|
1.0
|
|
HD13
|
M:LEU169
|
3.8
|
25.6
|
1.0
|
|
CD2
|
J:LEU169
|
3.9
|
25.6
|
1.0
|
|
CD2
|
I:LEU169
|
3.9
|
25.5
|
1.0
|
|
CD2
|
M:LEU169
|
3.9
|
25.6
|
1.0
|
|
CD2
|
N:LEU169
|
3.9
|
25.5
|
1.0
|
|
HD13
|
J:LEU169
|
4.0
|
25.6
|
1.0
|
|
CD2
|
J:HIS173
|
4.1
|
25.4
|
1.0
|
|
CD2
|
M:HIS173
|
4.2
|
25.2
|
1.0
|
|
CD2
|
N:HIS173
|
4.2
|
25.4
|
1.0
|
|
CD2
|
I:HIS173
|
4.2
|
25.3
|
1.0
|
|
HD2
|
J:HIS173
|
4.4
|
25.4
|
1.0
|
|
HD2
|
M:HIS173
|
4.4
|
25.2
|
1.0
|
|
HD2
|
N:HIS173
|
4.4
|
25.4
|
1.0
|
|
HD2
|
I:HIS173
|
4.4
|
25.3
|
1.0
|
|
CD1
|
N:LEU169
|
4.5
|
25.5
|
1.0
|
|
HD11
|
I:LEU169
|
4.5
|
25.5
|
1.0
|
|
CD1
|
I:LEU169
|
4.5
|
25.5
|
1.0
|
|
HD11
|
N:LEU169
|
4.5
|
25.5
|
1.0
|
|
HD11
|
M:LEU169
|
4.5
|
25.6
|
1.0
|
|
CD1
|
M:LEU169
|
4.5
|
25.6
|
1.0
|
|
HD23
|
J:LEU169
|
4.5
|
25.6
|
1.0
|
|
HD11
|
J:LEU169
|
4.6
|
25.6
|
1.0
|
|
HD23
|
I:LEU169
|
4.6
|
25.5
|
1.0
|
|
HD23
|
M:LEU169
|
4.6
|
25.6
|
1.0
|
|
CD1
|
J:LEU169
|
4.6
|
25.6
|
1.0
|
|
HD23
|
N:LEU169
|
4.6
|
25.5
|
1.0
|
|
CG
|
N:LEU169
|
4.8
|
25.5
|
1.0
|
|
CG
|
I:LEU169
|
4.8
|
25.5
|
1.0
|
|
CG
|
M:LEU169
|
4.8
|
25.6
|
1.0
|
|
CG
|
J:LEU169
|
4.8
|
25.6
|
1.0
|
|
HB3
|
J:LEU169
|
4.9
|
25.6
|
1.0
|
|
ND1
|
I:HIS173
|
4.9
|
25.3
|
1.0
|
|
HB3
|
M:LEU169
|
4.9
|
25.6
|
1.0
|
|
ND1
|
N:HIS173
|
4.9
|
25.4
|
1.0
|
|
ND1
|
M:HIS173
|
4.9
|
25.2
|
1.0
|
|
HB3
|
I:LEU169
|
4.9
|
25.5
|
1.0
|
|
HB3
|
N:LEU169
|
4.9
|
25.5
|
1.0
|
|
ND1
|
J:HIS173
|
5.0
|
25.4
|
1.0
|
|
Iron binding site 6 out
of 6 in 8tu8
Go back to
Iron Binding Sites List in 8tu8
Iron binding site 6 out
of 6 in the Cryo-Em Structure of Apoferritin Collected By Serialem on Glacios at 2.1 Angstrom Resolution
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of Cryo-Em Structure of Apoferritin Collected By Serialem on Glacios at 2.1 Angstrom Resolution within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
Q:Fe201
b:32.9
occ:1.00
|
HE2
|
U:HIS173
|
2.2
|
25.3
|
1.0
|
|
HE2
|
Q:HIS173
|
2.2
|
25.3
|
1.0
|
|
HE2
|
S:HIS173
|
2.2
|
25.4
|
1.0
|
|
HE2
|
X:HIS173
|
2.2
|
25.3
|
1.0
|
|
NE2
|
U:HIS173
|
3.0
|
25.3
|
1.0
|
|
NE2
|
Q:HIS173
|
3.0
|
25.3
|
1.0
|
|
NE2
|
S:HIS173
|
3.0
|
25.4
|
1.0
|
|
NE2
|
X:HIS173
|
3.0
|
25.3
|
1.0
|
|
HD22
|
Q:LEU169
|
3.3
|
25.6
|
1.0
|
|
HD22
|
S:LEU169
|
3.3
|
25.6
|
1.0
|
|
HD22
|
X:LEU169
|
3.3
|
25.6
|
1.0
|
|
HD22
|
U:LEU169
|
3.3
|
25.6
|
1.0
|
|
HE1
|
Q:HIS173
|
3.5
|
25.3
|
1.0
|
|
HE1
|
U:HIS173
|
3.6
|
25.3
|
1.0
|
|
HE1
|
S:HIS173
|
3.6
|
25.4
|
1.0
|
|
HE1
|
X:HIS173
|
3.6
|
25.3
|
1.0
|
|
HD21
|
Q:LEU169
|
3.6
|
25.6
|
1.0
|
|
HD21
|
X:LEU169
|
3.6
|
25.6
|
1.0
|
|
HD21
|
U:LEU169
|
3.6
|
25.6
|
1.0
|
|
HD21
|
S:LEU169
|
3.6
|
25.6
|
1.0
|
|
CE1
|
Q:HIS173
|
3.7
|
25.3
|
1.0
|
|
CE1
|
U:HIS173
|
3.7
|
25.3
|
1.0
|
|
CE1
|
S:HIS173
|
3.7
|
25.4
|
1.0
|
|
CE1
|
X:HIS173
|
3.7
|
25.3
|
1.0
|
|
HD13
|
X:LEU169
|
3.8
|
25.6
|
1.0
|
|
HD13
|
Q:LEU169
|
3.8
|
25.6
|
1.0
|
|
HD13
|
U:LEU169
|
3.8
|
25.6
|
1.0
|
|
HD13
|
S:LEU169
|
3.8
|
25.6
|
1.0
|
|
CD2
|
Q:LEU169
|
3.9
|
25.6
|
1.0
|
|
CD2
|
X:LEU169
|
3.9
|
25.6
|
1.0
|
|
CD2
|
U:LEU169
|
3.9
|
25.6
|
1.0
|
|
CD2
|
S:LEU169
|
3.9
|
25.6
|
1.0
|
|
CD2
|
U:HIS173
|
4.1
|
25.3
|
1.0
|
|
CD2
|
Q:HIS173
|
4.1
|
25.3
|
1.0
|
|
CD2
|
S:HIS173
|
4.1
|
25.4
|
1.0
|
|
CD2
|
X:HIS173
|
4.2
|
25.3
|
1.0
|
|
HD2
|
U:HIS173
|
4.4
|
25.3
|
1.0
|
|
HD2
|
X:HIS173
|
4.4
|
25.3
|
1.0
|
|
HD2
|
S:HIS173
|
4.4
|
25.4
|
1.0
|
|
HD2
|
Q:HIS173
|
4.4
|
25.3
|
1.0
|
|
HD11
|
U:LEU169
|
4.5
|
25.6
|
1.0
|
|
CD1
|
X:LEU169
|
4.5
|
25.6
|
1.0
|
|
HD11
|
Q:LEU169
|
4.5
|
25.6
|
1.0
|
|
HD11
|
X:LEU169
|
4.5
|
25.6
|
1.0
|
|
HD11
|
S:LEU169
|
4.5
|
25.6
|
1.0
|
|
CD1
|
U:LEU169
|
4.5
|
25.6
|
1.0
|
|
CD1
|
Q:LEU169
|
4.5
|
25.6
|
1.0
|
|
CD1
|
S:LEU169
|
4.5
|
25.6
|
1.0
|
|
HD23
|
Q:LEU169
|
4.6
|
25.6
|
1.0
|
|
HD23
|
S:LEU169
|
4.6
|
25.6
|
1.0
|
|
HD23
|
U:LEU169
|
4.6
|
25.6
|
1.0
|
|
HD23
|
X:LEU169
|
4.6
|
25.6
|
1.0
|
|
CG
|
Q:LEU169
|
4.8
|
25.6
|
1.0
|
|
CG
|
X:LEU169
|
4.8
|
25.6
|
1.0
|
|
CG
|
U:LEU169
|
4.8
|
25.6
|
1.0
|
|
CG
|
S:LEU169
|
4.8
|
25.6
|
1.0
|
|
HB3
|
Q:LEU169
|
4.9
|
25.6
|
1.0
|
|
HB3
|
U:LEU169
|
4.9
|
25.6
|
1.0
|
|
HB3
|
X:LEU169
|
4.9
|
25.6
|
1.0
|
|
ND1
|
Q:HIS173
|
4.9
|
25.3
|
1.0
|
|
ND1
|
U:HIS173
|
4.9
|
25.3
|
1.0
|
|
HB3
|
S:LEU169
|
4.9
|
25.6
|
1.0
|
|
ND1
|
S:HIS173
|
4.9
|
25.4
|
1.0
|
|
ND1
|
X:HIS173
|
4.9
|
25.3
|
1.0
|
|
Reference:
L.Jia,
E.A.Ruben,
S.K.Olsen,
E.V.Wasmuth.
Cryo-Em Structure of Apoferritin Collected By Serialem on Glacios at 2.1 Angstrom Resolution To Be Published.
Page generated: Sat Feb 8 18:43:09 2025
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