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Iron in PDB 9cz0: Structure of Thioferritin From Pyrococcus Furiosis

Iron Binding Sites:

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>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 24;

Binding sites:

The binding sites of Iron atom in the Structure of Thioferritin From Pyrococcus Furiosis (pdb code 9cz0). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 24 binding sites of Iron where determined in the Structure of Thioferritin From Pyrococcus Furiosis, PDB code: 9cz0:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 24 in 9cz0

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Iron binding site 1 out of 24 in the Structure of Thioferritin From Pyrococcus Furiosis


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Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Structure of Thioferritin From Pyrococcus Furiosis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe201

b:31.8
occ:0.50
OE2 A:GLU148 1.9 26.0 1.0
OE1 A:GLU30 2.0 25.3 1.0
OD1 A:ASP63 2.1 28.0 1.0
ND1 A:HIS66 2.2 16.6 1.0
OE2 A:GLU30 2.2 22.8 1.0
CD A:GLU30 2.4 14.1 1.0
CD A:GLU148 3.0 10.9 1.0
CE1 A:HIS66 3.0 16.0 1.0
CG A:ASP63 3.1 19.3 1.0
CG A:HIS66 3.2 13.9 1.0
OE1 A:GLU148 3.4 22.9 1.0
CB A:HIS66 3.7 10.6 1.0
FE A:FE202 3.7 52.1 0.5
CA A:ASP63 3.7 17.4 1.0
CB A:ASP63 3.7 12.3 1.0
CG A:GLU30 3.9 17.5 1.0
OD2 A:ASP63 4.0 30.6 1.0
NE2 A:HIS66 4.2 14.2 1.0
CG2 A:ILE144 4.2 7.5 1.0
CG A:GLU148 4.3 16.1 1.0
CD2 A:HIS66 4.3 13.2 1.0
N A:ASP63 4.6 13.8 1.0
OH A:TYR123 4.6 17.9 1.0
O A:ASP63 4.7 17.2 1.0
CB A:GLU30 4.7 13.0 1.0
CE2 A:TYR123 4.7 15.2 1.0
C A:ASP63 4.7 16.2 1.0
O A:GLU62 4.8 16.7 1.0

Iron binding site 2 out of 24 in 9cz0

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Iron binding site 2 out of 24 in the Structure of Thioferritin From Pyrococcus Furiosis


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Structure of Thioferritin From Pyrococcus Furiosis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe202

b:52.1
occ:0.50
OE1 A:GLU148 2.0 22.9 1.0
OE1 A:GLU116 2.1 36.2 1.0
ND1 A:HIS151 2.6 25.7 1.0
OD1 A:ASP63 2.7 28.0 1.0
CD A:GLU116 2.9 25.5 1.0
OE2 A:GLU116 2.9 31.2 1.0
OD2 A:ASP63 3.0 30.6 1.0
CD A:GLU148 3.1 10.9 1.0
CG A:ASP63 3.3 19.3 1.0
CE1 A:HIS151 3.4 23.8 1.0
OE2 A:GLU148 3.5 26.0 1.0
CG A:HIS151 3.7 22.5 1.0
FE A:FE201 3.7 31.8 0.5
CB A:HIS151 4.0 17.6 1.0
CG A:GLU116 4.3 19.9 1.0
CG A:GLU148 4.4 16.1 1.0
CA A:GLU148 4.5 12.7 1.0
NE2 A:HIS151 4.6 25.6 1.0
CB A:GLU148 4.7 9.4 1.0
CD2 A:HIS151 4.7 18.6 1.0
CB A:ALA119 4.7 10.2 1.0
CE1 A:HIS66 4.8 16.0 1.0
CB A:ASP63 4.8 12.3 1.0
O A:ALA59 4.8 18.2 1.0
ND1 A:HIS66 4.9 16.6 1.0
OH A:TYR37 4.9 32.5 1.0
CB A:GLU116 5.0 17.3 1.0

Iron binding site 3 out of 24 in 9cz0

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Iron binding site 3 out of 24 in the Structure of Thioferritin From Pyrococcus Furiosis


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Structure of Thioferritin From Pyrococcus Furiosis within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe201

b:31.8
occ:0.50
OE2 B:GLU148 1.9 26.0 1.0
OE1 B:GLU30 2.0 25.3 1.0
OD1 B:ASP63 2.1 28.0 1.0
ND1 B:HIS66 2.2 16.6 1.0
OE2 B:GLU30 2.2 22.8 1.0
CD B:GLU30 2.4 14.1 1.0
CD B:GLU148 3.0 10.9 1.0
CE1 B:HIS66 3.0 16.0 1.0
CG B:ASP63 3.1 19.3 1.0
CG B:HIS66 3.2 13.9 1.0
OE1 B:GLU148 3.4 22.9 1.0
CB B:HIS66 3.7 10.6 1.0
FE B:FE202 3.7 52.1 0.5
CA B:ASP63 3.7 17.4 1.0
CB B:ASP63 3.7 12.3 1.0
CG B:GLU30 3.9 17.5 1.0
OD2 B:ASP63 4.0 30.6 1.0
NE2 B:HIS66 4.2 14.2 1.0
CG2 B:ILE144 4.2 7.5 1.0
CG B:GLU148 4.3 16.1 1.0
CD2 B:HIS66 4.3 13.2 1.0
N B:ASP63 4.6 13.8 1.0
OH B:TYR123 4.6 17.9 1.0
O B:ASP63 4.7 17.2 1.0
CB B:GLU30 4.7 13.0 1.0
CE2 B:TYR123 4.7 15.2 1.0
C B:ASP63 4.7 16.2 1.0
O B:GLU62 4.8 16.7 1.0

Iron binding site 4 out of 24 in 9cz0

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Iron binding site 4 out of 24 in the Structure of Thioferritin From Pyrococcus Furiosis


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Structure of Thioferritin From Pyrococcus Furiosis within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe202

b:52.1
occ:0.50
OE1 B:GLU148 2.0 22.9 1.0
OE1 B:GLU116 2.1 36.2 1.0
ND1 B:HIS151 2.6 25.7 1.0
OD1 B:ASP63 2.7 28.0 1.0
CD B:GLU116 2.9 25.5 1.0
OE2 B:GLU116 2.9 31.2 1.0
OD2 B:ASP63 3.0 30.6 1.0
CD B:GLU148 3.1 10.9 1.0
CG B:ASP63 3.3 19.3 1.0
CE1 B:HIS151 3.4 23.8 1.0
OE2 B:GLU148 3.5 26.0 1.0
CG B:HIS151 3.7 22.5 1.0
FE B:FE201 3.7 31.8 0.5
CB B:HIS151 4.0 17.6 1.0
CG B:GLU116 4.3 19.9 1.0
CG B:GLU148 4.4 16.1 1.0
CA B:GLU148 4.5 12.7 1.0
NE2 B:HIS151 4.6 25.6 1.0
CB B:GLU148 4.7 9.4 1.0
CD2 B:HIS151 4.7 18.6 1.0
CB B:ALA119 4.7 10.2 1.0
CE1 B:HIS66 4.8 16.0 1.0
CB B:ASP63 4.8 12.3 1.0
O B:ALA59 4.8 18.2 1.0
ND1 B:HIS66 4.9 16.6 1.0
OH B:TYR37 4.9 32.5 1.0
CB B:GLU116 5.0 17.3 1.0

Iron binding site 5 out of 24 in 9cz0

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Iron binding site 5 out of 24 in the Structure of Thioferritin From Pyrococcus Furiosis


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Structure of Thioferritin From Pyrococcus Furiosis within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe201

b:31.8
occ:0.50
OE2 C:GLU148 1.9 26.0 1.0
OE1 C:GLU30 2.0 25.3 1.0
OD1 C:ASP63 2.1 28.0 1.0
ND1 C:HIS66 2.2 16.6 1.0
OE2 C:GLU30 2.2 22.8 1.0
CD C:GLU30 2.4 14.1 1.0
CD C:GLU148 3.0 10.9 1.0
CE1 C:HIS66 3.0 16.0 1.0
CG C:ASP63 3.1 19.3 1.0
CG C:HIS66 3.2 13.9 1.0
OE1 C:GLU148 3.4 22.9 1.0
CB C:HIS66 3.7 10.6 1.0
FE C:FE202 3.7 52.1 0.5
CA C:ASP63 3.7 17.4 1.0
CB C:ASP63 3.7 12.3 1.0
CG C:GLU30 3.9 17.5 1.0
OD2 C:ASP63 4.0 30.6 1.0
NE2 C:HIS66 4.2 14.2 1.0
CG2 C:ILE144 4.2 7.5 1.0
CG C:GLU148 4.3 16.1 1.0
CD2 C:HIS66 4.3 13.2 1.0
N C:ASP63 4.6 13.8 1.0
OH C:TYR123 4.6 17.9 1.0
O C:ASP63 4.7 17.2 1.0
CB C:GLU30 4.7 13.0 1.0
CE2 C:TYR123 4.7 15.2 1.0
C C:ASP63 4.7 16.2 1.0
O C:GLU62 4.8 16.7 1.0

Iron binding site 6 out of 24 in 9cz0

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Iron binding site 6 out of 24 in the Structure of Thioferritin From Pyrococcus Furiosis


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Structure of Thioferritin From Pyrococcus Furiosis within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe202

b:52.1
occ:0.50
OE1 C:GLU148 2.0 22.9 1.0
OE1 C:GLU116 2.1 36.2 1.0
ND1 C:HIS151 2.6 25.7 1.0
OD1 C:ASP63 2.7 28.0 1.0
CD C:GLU116 2.9 25.5 1.0
OE2 C:GLU116 2.9 31.2 1.0
OD2 C:ASP63 3.0 30.6 1.0
CD C:GLU148 3.1 10.9 1.0
CG C:ASP63 3.3 19.3 1.0
CE1 C:HIS151 3.4 23.8 1.0
OE2 C:GLU148 3.5 26.0 1.0
CG C:HIS151 3.7 22.5 1.0
FE C:FE201 3.7 31.8 0.5
CB C:HIS151 4.0 17.6 1.0
CG C:GLU116 4.3 19.9 1.0
CG C:GLU148 4.4 16.1 1.0
CA C:GLU148 4.5 12.7 1.0
NE2 C:HIS151 4.6 25.6 1.0
CB C:GLU148 4.7 9.4 1.0
CD2 C:HIS151 4.7 18.6 1.0
CB C:ALA119 4.7 10.2 1.0
CE1 C:HIS66 4.8 16.0 1.0
CB C:ASP63 4.8 12.3 1.0
O C:ALA59 4.8 18.2 1.0
ND1 C:HIS66 4.9 16.6 1.0
OH C:TYR37 4.9 32.5 1.0
CB C:GLU116 5.0 17.3 1.0

Iron binding site 7 out of 24 in 9cz0

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Iron binding site 7 out of 24 in the Structure of Thioferritin From Pyrococcus Furiosis


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Structure of Thioferritin From Pyrococcus Furiosis within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Fe201

b:31.8
occ:0.50
OE2 D:GLU148 1.9 26.0 1.0
OE1 D:GLU30 2.0 25.3 1.0
OD1 D:ASP63 2.1 28.0 1.0
ND1 D:HIS66 2.2 16.6 1.0
OE2 D:GLU30 2.2 22.8 1.0
CD D:GLU30 2.4 14.1 1.0
CD D:GLU148 3.0 10.9 1.0
CE1 D:HIS66 3.0 16.0 1.0
CG D:ASP63 3.1 19.3 1.0
CG D:HIS66 3.2 13.9 1.0
OE1 D:GLU148 3.4 22.9 1.0
CB D:HIS66 3.7 10.6 1.0
FE D:FE202 3.7 52.1 0.5
CA D:ASP63 3.7 17.4 1.0
CB D:ASP63 3.7 12.3 1.0
CG D:GLU30 3.9 17.5 1.0
OD2 D:ASP63 4.0 30.6 1.0
NE2 D:HIS66 4.2 14.2 1.0
CG2 D:ILE144 4.2 7.5 1.0
CG D:GLU148 4.3 16.1 1.0
CD2 D:HIS66 4.3 13.2 1.0
N D:ASP63 4.6 13.8 1.0
OH D:TYR123 4.6 17.9 1.0
O D:ASP63 4.7 17.2 1.0
CB D:GLU30 4.7 13.0 1.0
CE2 D:TYR123 4.7 15.2 1.0
C D:ASP63 4.7 16.2 1.0
O D:GLU62 4.8 16.7 1.0

Iron binding site 8 out of 24 in 9cz0

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Iron binding site 8 out of 24 in the Structure of Thioferritin From Pyrococcus Furiosis


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Structure of Thioferritin From Pyrococcus Furiosis within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Fe202

b:52.1
occ:0.50
OE1 D:GLU148 2.0 22.9 1.0
OE1 D:GLU116 2.1 36.2 1.0
ND1 D:HIS151 2.6 25.7 1.0
OD1 D:ASP63 2.7 28.0 1.0
CD D:GLU116 2.9 25.5 1.0
OE2 D:GLU116 2.9 31.2 1.0
OD2 D:ASP63 3.0 30.6 1.0
CD D:GLU148 3.1 10.9 1.0
CG D:ASP63 3.3 19.3 1.0
CE1 D:HIS151 3.4 23.8 1.0
OE2 D:GLU148 3.5 26.0 1.0
CG D:HIS151 3.7 22.5 1.0
FE D:FE201 3.7 31.8 0.5
CB D:HIS151 4.0 17.6 1.0
CG D:GLU116 4.3 19.9 1.0
CG D:GLU148 4.4 16.1 1.0
CA D:GLU148 4.5 12.7 1.0
NE2 D:HIS151 4.6 25.6 1.0
CB D:GLU148 4.7 9.4 1.0
CD2 D:HIS151 4.7 18.6 1.0
CB D:ALA119 4.7 10.2 1.0
CE1 D:HIS66 4.8 16.0 1.0
CB D:ASP63 4.8 12.3 1.0
O D:ALA59 4.8 18.2 1.0
ND1 D:HIS66 4.9 16.6 1.0
OH D:TYR37 4.9 32.5 1.0
CB D:GLU116 5.0 17.3 1.0

Iron binding site 9 out of 24 in 9cz0

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Iron binding site 9 out of 24 in the Structure of Thioferritin From Pyrococcus Furiosis


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Structure of Thioferritin From Pyrococcus Furiosis within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Fe201

b:31.8
occ:0.50
OE2 E:GLU148 1.9 26.0 1.0
OE1 E:GLU30 2.0 25.3 1.0
OD1 E:ASP63 2.1 28.0 1.0
ND1 E:HIS66 2.2 16.6 1.0
OE2 E:GLU30 2.2 22.8 1.0
CD E:GLU30 2.4 14.1 1.0
CD E:GLU148 3.0 10.9 1.0
CE1 E:HIS66 3.0 16.0 1.0
CG E:ASP63 3.1 19.3 1.0
CG E:HIS66 3.2 13.9 1.0
OE1 E:GLU148 3.4 22.9 1.0
CB E:HIS66 3.7 10.6 1.0
FE E:FE202 3.7 52.1 0.5
CA E:ASP63 3.7 17.4 1.0
CB E:ASP63 3.7 12.3 1.0
CG E:GLU30 3.9 17.5 1.0
OD2 E:ASP63 4.0 30.6 1.0
NE2 E:HIS66 4.2 14.2 1.0
CG2 E:ILE144 4.2 7.5 1.0
CG E:GLU148 4.3 16.1 1.0
CD2 E:HIS66 4.3 13.2 1.0
N E:ASP63 4.6 13.8 1.0
OH E:TYR123 4.6 17.9 1.0
O E:ASP63 4.7 17.2 1.0
CB E:GLU30 4.7 13.0 1.0
CE2 E:TYR123 4.7 15.2 1.0
C E:ASP63 4.7 16.2 1.0
O E:GLU62 4.8 16.7 1.0

Iron binding site 10 out of 24 in 9cz0

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Iron binding site 10 out of 24 in the Structure of Thioferritin From Pyrococcus Furiosis


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Structure of Thioferritin From Pyrococcus Furiosis within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Fe202

b:52.1
occ:0.50
OE1 E:GLU148 2.0 22.9 1.0
OE1 E:GLU116 2.1 36.2 1.0
ND1 E:HIS151 2.6 25.7 1.0
OD1 E:ASP63 2.7 28.0 1.0
CD E:GLU116 2.9 25.5 1.0
OE2 E:GLU116 2.9 31.2 1.0
OD2 E:ASP63 3.0 30.6 1.0
CD E:GLU148 3.1 10.9 1.0
CG E:ASP63 3.3 19.3 1.0
CE1 E:HIS151 3.4 23.8 1.0
OE2 E:GLU148 3.5 26.0 1.0
CG E:HIS151 3.7 22.5 1.0
FE E:FE201 3.7 31.8 0.5
CB E:HIS151 4.0 17.6 1.0
CG E:GLU116 4.3 19.9 1.0
CG E:GLU148 4.4 16.1 1.0
CA E:GLU148 4.5 12.7 1.0
NE2 E:HIS151 4.6 25.6 1.0
CB E:GLU148 4.7 9.4 1.0
CD2 E:HIS151 4.7 18.6 1.0
CB E:ALA119 4.7 10.2 1.0
CE1 E:HIS66 4.8 16.0 1.0
CB E:ASP63 4.8 12.3 1.0
O E:ALA59 4.8 18.2 1.0
ND1 E:HIS66 4.9 16.6 1.0
OH E:TYR37 4.9 32.5 1.0
CB E:GLU116 5.0 17.3 1.0

Reference:

C.C.Gauvin, H.K.Waghwani, M.Tokmina-Lukaszewska, B.Bothner, T.Douglas, C.M.Lawrence. Structure of Thioferritin From Pyrococcus Furiosis. To Be Published.
Page generated: Sat Aug 23 03:03:03 2025

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