Iron in PDB 9etz: III2IV Respiratory Supercomplex From Saccharomyces Cerevisiae

All present enzymatic activity of III2IV Respiratory Supercomplex From Saccharomyces Cerevisiae:
7.1.1.8; 7.1.1.9;

The structure of III2IV Respiratory Supercomplex From Saccharomyces Cerevisiae also contains other interesting chemical elements:

Copper	(Cu)	3 atoms
Magnesium	(Mg)	1 atom
Zinc	(Zn)	1 atom
Calcium	(Ca)	1 atom

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Iron atom in the III2IV Respiratory Supercomplex From Saccharomyces Cerevisiae (pdb code 9etz). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 12 binding sites of Iron where determined in the III2IV Respiratory Supercomplex From Saccharomyces Cerevisiae, PDB code: 9etz:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 12 in the III2IV Respiratory Supercomplex From Saccharomyces Cerevisiae


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of III2IV Respiratory Supercomplex From Saccharomyces Cerevisiae within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe401 b:70.2 occ:1.00 FE C:HEM401 0.0 70.2 1.0 NC C:HEM401 2.0 62.9 1.0 NA C:HEM401 2.0 62.1 1.0 NB C:HEM401 2.1 62.8 1.0 ND C:HEM401 2.1 63.0 1.0 NE2 C:HIS183 2.1 56.0 1.0 NE2 C:HIS82 2.3 57.2 1.0 CE1 C:HIS183 2.9 57.1 1.0 C4C C:HEM401 3.0 57.8 1.0 C4A C:HEM401 3.0 58.9 1.0 C1D C:HEM401 3.0 60.3 1.0 C1B C:HEM401 3.1 60.5 1.0 C1A C:HEM401 3.1 60.8 1.0 C1C C:HEM401 3.1 59.8 1.0 C4B C:HEM401 3.1 59.9 1.0 CE1 C:HIS82 3.1 55.8 1.0 C4D C:HEM401 3.1 57.4 1.0 CD2 C:HIS183 3.3 54.7 1.0 CD2 C:HIS82 3.3 57.2 1.0 CHD C:HEM401 3.4 57.8 1.0 CHB C:HEM401 3.4 60.1 1.0 CHC C:HEM401 3.5 59.7 1.0 CHA C:HEM401 3.5 58.0 1.0 ND1 C:HIS183 4.1 61.1 1.0 C3C C:HEM401 4.2 60.5 1.0 C3A C:HEM401 4.3 59.0 1.0 C2A C:HEM401 4.3 61.4 1.0 C2C C:HEM401 4.3 58.8 1.0 C2D C:HEM401 4.3 60.7 1.0 C2B C:HEM401 4.3 58.5 1.0 ND1 C:HIS82 4.3 56.9 1.0 C3B C:HEM401 4.3 59.9 1.0 CG C:HIS183 4.3 58.9 1.0 C3D C:HEM401 4.3 58.5 1.0 CG C:HIS82 4.4 59.0 1.0 CA C:GLY131 4.9 59.8 1.0

Iron binding site 2 out of 12 in the III2IV Respiratory Supercomplex From Saccharomyces Cerevisiae


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of III2IV Respiratory Supercomplex From Saccharomyces Cerevisiae within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe402 b:75.7 occ:1.00 FE C:HEM402 0.0 75.7 1.0 NC C:HEM402 2.0 63.4 1.0 NB C:HEM402 2.0 58.2 1.0 ND C:HEM402 2.0 60.5 1.0 NA C:HEM402 2.0 60.2 1.0 NE2 C:HIS197 2.3 54.2 1.0 NE2 C:HIS96 2.3 61.1 1.0 C4C C:HEM402 3.0 60.1 1.0 C1C C:HEM402 3.0 58.2 1.0 C1B C:HEM402 3.1 58.3 1.0 C1D C:HEM402 3.1 57.9 1.0 C4B C:HEM402 3.1 55.5 1.0 C4A C:HEM402 3.1 58.3 1.0 C1A C:HEM402 3.1 60.9 1.0 C4D C:HEM402 3.1 59.8 1.0 CE1 C:HIS96 3.1 57.7 1.0 CD2 C:HIS197 3.2 51.4 1.0 CE1 C:HIS197 3.3 50.5 1.0 CHD C:HEM402 3.4 58.1 1.0 CHC C:HEM402 3.4 53.6 1.0 CHB C:HEM402 3.4 58.2 1.0 CHA C:HEM402 3.4 58.4 1.0 CD2 C:HIS96 3.4 62.8 1.0 C2C C:HEM402 4.2 59.9 1.0 C3C C:HEM402 4.2 60.0 1.0 C2B C:HEM402 4.3 60.0 1.0 C3A C:HEM402 4.3 60.4 1.0 C2A C:HEM402 4.3 63.8 1.0 ND1 C:HIS96 4.3 60.2 1.0 C2D C:HEM402 4.3 61.0 1.0 C3D C:HEM402 4.3 61.5 1.0 C3B C:HEM402 4.3 62.2 1.0 CG C:HIS197 4.4 55.7 1.0 ND1 C:HIS197 4.4 55.3 1.0 CG C:HIS96 4.5 61.0 1.0

Iron binding site 3 out of 12 in the III2IV Respiratory Supercomplex From Saccharomyces Cerevisiae


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of III2IV Respiratory Supercomplex From Saccharomyces Cerevisiae within 5.0Å range: probe atom residue distance (Å) B Occ D:Fe401 b:93.7 occ:1.00 FE D:HEC401 0.0 93.7 1.0 NC D:HEC401 2.0 72.4 1.0 NA D:HEC401 2.0 72.0 1.0 NB D:HEC401 2.1 70.8 1.0 ND D:HEC401 2.1 71.9 1.0 NE2 D:HIS105 2.2 63.6 1.0 SD D:MET225 2.2 65.7 1.0 C1D D:HEC401 3.1 69.4 1.0 C1C D:HEC401 3.1 70.0 1.0 C4B D:HEC401 3.1 67.8 1.0 C4A D:HEC401 3.1 70.3 1.0 C1A D:HEC401 3.1 71.5 1.0 C4C D:HEC401 3.1 69.3 1.0 C1B D:HEC401 3.1 67.9 1.0 C4D D:HEC401 3.1 67.8 1.0 CE1 D:HIS105 3.1 63.1 1.0 CD2 D:HIS105 3.2 64.5 1.0 CHD D:HEC401 3.4 68.4 1.0 CHA D:HEC401 3.4 69.5 1.0 CHB D:HEC401 3.4 68.8 1.0 CHC D:HEC401 3.4 69.6 1.0 CE D:MET225 3.5 68.0 1.0 CG D:MET225 3.6 66.5 1.0 ND1 D:HIS105 4.2 65.9 1.0 C2C D:HEC401 4.3 71.2 1.0 C3A D:HEC401 4.3 69.7 1.0 C3B D:HEC401 4.3 67.3 1.0 C2B D:HEC401 4.3 67.8 1.0 C2A D:HEC401 4.3 71.4 1.0 C3C D:HEC401 4.3 71.4 1.0 C2D D:HEC401 4.3 68.4 1.0 CB D:MET225 4.3 68.8 1.0 C3D D:HEC401 4.3 67.7 1.0 CG D:HIS105 4.3 65.1 1.0

Iron binding site 4 out of 12 in the III2IV Respiratory Supercomplex From Saccharomyces Cerevisiae


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of III2IV Respiratory Supercomplex From Saccharomyces Cerevisiae within 5.0Å range: probe atom residue distance (Å) B Occ E:Fe301 b:183.4 occ:1.00 FE1 E:FES301 0.0 183.4 1.0 S2 E:FES301 2.2 177.6 1.0 S1 E:FES301 2.2 180.2 1.0 SG E:CYS178 2.3 98.8 1.0 SG E:CYS159 2.3 103.8 1.0 FE2 E:FES301 2.7 183.4 1.0 CB E:CYS159 3.0 98.9 1.0 CB E:CYS180 3.9 112.4 1.0 CB E:CYS164 3.9 98.8 1.0 CB E:CYS178 4.0 96.6 1.0 ND1 E:HIS181 4.2 121.6 1.0 OG E:SER183 4.4 96.9 1.0 CA E:CYS159 4.4 99.2 1.0 SG E:CYS164 4.5 103.6 1.0 SG E:CYS180 4.5 120.0 1.0 CB E:HIS161 4.8 107.5 1.0 OH E:TYR185 4.9 106.7 1.0 ND1 E:HIS161 4.9 108.8 1.0 O E:GLY163 4.9 89.2 1.0 O E:CYS178 4.9 97.3 1.0 CA E:CYS180 4.9 112.1 1.0 N E:HIS181 4.9 118.8 1.0 CE1 E:HIS181 4.9 120.6 1.0 N E:CYS180 5.0 111.7 1.0

Iron binding site 5 out of 12 in the III2IV Respiratory Supercomplex From Saccharomyces Cerevisiae


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of III2IV Respiratory Supercomplex From Saccharomyces Cerevisiae within 5.0Å range: probe atom residue distance (Å) B Occ E:Fe301 b:183.4 occ:1.00 FE2 E:FES301 0.0 183.4 1.0 S2 E:FES301 2.2 177.6 1.0 S1 E:FES301 2.2 180.2 1.0 ND1 E:HIS161 2.2 108.8 1.0 FE1 E:FES301 2.7 183.4 1.0 CG E:HIS161 3.0 108.3 1.0 CB E:HIS161 3.0 107.5 1.0 ND1 E:HIS181 3.2 121.6 1.0 CE1 E:HIS161 3.4 106.8 1.0 CE1 E:HIS181 3.4 120.6 1.0 N E:LEU162 4.0 103.3 1.0 SG E:CYS159 4.1 103.8 1.0 CD2 E:HIS161 4.2 106.9 1.0 CG E:HIS181 4.2 122.4 1.0 CA E:HIS161 4.3 107.3 1.0 NE2 E:HIS161 4.4 107.6 1.0 C E:HIS161 4.5 107.6 1.0 NE2 E:HIS181 4.5 122.5 1.0 CB E:LEU162 4.6 100.7 1.0 N E:HIS161 4.7 107.4 1.0 CB E:CYS159 4.8 98.9 1.0 SG E:CYS178 4.9 98.8 1.0 CA E:LEU162 4.9 103.1 1.0 CB E:HIS181 4.9 120.5 1.0 CD2 E:HIS181 4.9 122.5 1.0

Iron binding site 6 out of 12 in the III2IV Respiratory Supercomplex From Saccharomyces Cerevisiae


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of III2IV Respiratory Supercomplex From Saccharomyces Cerevisiae within 5.0Å range: probe atom residue distance (Å) B Occ N:Fe401 b:79.3 occ:1.00 FE N:HEM401 0.0 79.3 1.0 NA N:HEM401 2.0 61.6 1.0 NC N:HEM401 2.0 60.7 1.0 NB N:HEM401 2.0 64.0 1.0 ND N:HEM401 2.1 62.0 1.0 NE2 N:HIS183 2.2 56.2 1.0 NE2 N:HIS82 2.3 57.5 1.0 C4C N:HEM401 3.0 57.1 1.0 C4A N:HEM401 3.1 59.8 1.0 C1D N:HEM401 3.1 61.9 1.0 C1A N:HEM401 3.1 58.2 1.0 C4B N:HEM401 3.1 57.1 1.0 C1B N:HEM401 3.1 61.7 1.0 C1C N:HEM401 3.1 61.7 1.0 CE1 N:HIS183 3.1 53.2 1.0 C4D N:HEM401 3.1 58.5 1.0 CE1 N:HIS82 3.2 58.1 1.0 CD2 N:HIS183 3.2 52.8 1.0 CD2 N:HIS82 3.3 56.8 1.0 CHD N:HEM401 3.4 60.1 1.0 CHB N:HEM401 3.4 60.6 1.0 CHA N:HEM401 3.4 59.2 1.0 CHC N:HEM401 3.4 56.9 1.0 ND1 N:HIS183 4.2 52.1 1.0 C3A N:HEM401 4.3 61.0 1.0 C3C N:HEM401 4.3 61.4 1.0 C2A N:HEM401 4.3 60.6 1.0 C2D N:HEM401 4.3 59.7 1.0 C2C N:HEM401 4.3 62.1 1.0 C3B N:HEM401 4.3 59.6 1.0 C2B N:HEM401 4.3 61.6 1.0 C3D N:HEM401 4.3 61.0 1.0 CG N:HIS183 4.3 53.6 1.0 ND1 N:HIS82 4.3 54.7 1.0 CG N:HIS82 4.4 58.7 1.0 CA N:GLY131 4.9 55.1 1.0

Iron binding site 7 out of 12 in the III2IV Respiratory Supercomplex From Saccharomyces Cerevisiae


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of III2IV Respiratory Supercomplex From Saccharomyces Cerevisiae within 5.0Å range: probe atom residue distance (Å) B Occ N:Fe402 b:73.8 occ:1.00 FE N:HEM402 0.0 73.8 1.0 NC N:HEM402 2.0 62.9 1.0 ND N:HEM402 2.0 65.2 1.0 NB N:HEM402 2.0 60.6 1.0 NA N:HEM402 2.0 61.9 1.0 NE2 N:HIS96 2.3 57.5 1.0 NE2 N:HIS197 2.3 59.9 1.0 C4C N:HEM402 3.0 61.4 1.0 C4A N:HEM402 3.0 61.8 1.0 C1D N:HEM402 3.0 61.8 1.0 C1C N:HEM402 3.0 60.4 1.0 C1B N:HEM402 3.0 59.6 1.0 C1A N:HEM402 3.1 58.5 1.0 C4B N:HEM402 3.1 58.7 1.0 C4D N:HEM402 3.1 59.0 1.0 CD2 N:HIS197 3.2 61.6 1.0 CE1 N:HIS96 3.2 56.6 1.0 CD2 N:HIS96 3.3 58.1 1.0 CE1 N:HIS197 3.3 54.4 1.0 CHD N:HEM402 3.4 59.8 1.0 CHB N:HEM402 3.4 62.5 1.0 CHC N:HEM402 3.4 59.7 1.0 CHA N:HEM402 3.4 57.0 1.0 C3C N:HEM402 4.2 59.7 1.0 C2C N:HEM402 4.2 60.8 1.0 C3A N:HEM402 4.3 60.0 1.0 C2A N:HEM402 4.3 61.5 1.0 C2D N:HEM402 4.3 63.0 1.0 C2B N:HEM402 4.3 60.2 1.0 C3D N:HEM402 4.3 60.3 1.0 C3B N:HEM402 4.3 61.6 1.0 CG N:HIS197 4.3 61.7 1.0 ND1 N:HIS96 4.3 57.5 1.0 ND1 N:HIS197 4.4 58.8 1.0 CG N:HIS96 4.4 60.3 1.0

Iron binding site 8 out of 12 in the III2IV Respiratory Supercomplex From Saccharomyces Cerevisiae


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of III2IV Respiratory Supercomplex From Saccharomyces Cerevisiae within 5.0Å range: probe atom residue distance (Å) B Occ O:Fe401 b:86.8 occ:1.00 FE O:HEC401 0.0 86.8 1.0 NC O:HEC401 2.0 73.0 1.0 NA O:HEC401 2.0 73.1 1.0 NB O:HEC401 2.1 71.6 1.0 ND O:HEC401 2.1 71.8 1.0 NE2 O:HIS105 2.2 68.6 1.0 SD O:MET225 2.3 67.9 1.0 CE1 O:HIS105 2.9 66.2 1.0 C1C O:HEC401 3.0 71.8 1.0 C4C O:HEC401 3.1 72.9 1.0 C1A O:HEC401 3.1 72.9 1.0 C1B O:HEC401 3.1 70.4 1.0 C4B O:HEC401 3.1 70.0 1.0 C4D O:HEC401 3.1 70.1 1.0 C4A O:HEC401 3.1 70.3 1.0 C1D O:HEC401 3.1 70.5 1.0 CD2 O:HIS105 3.4 67.4 1.0 CHC O:HEC401 3.4 71.7 1.0 CHA O:HEC401 3.4 72.7 1.0 CHD O:HEC401 3.4 69.4 1.0 CHB O:HEC401 3.4 69.6 1.0 CE O:MET225 3.5 69.3 1.0 CG O:MET225 3.7 69.0 1.0 ND1 O:HIS105 4.1 68.9 1.0 CB O:MET225 4.2 69.3 1.0 C2B O:HEC401 4.3 70.7 1.0 C2C O:HEC401 4.3 71.1 1.0 C3C O:HEC401 4.3 72.2 1.0 C3B O:HEC401 4.3 70.2 1.0 C2A O:HEC401 4.3 71.7 1.0 C3A O:HEC401 4.3 69.7 1.0 C3D O:HEC401 4.3 70.4 1.0 C2D O:HEC401 4.3 71.6 1.0 CG O:HIS105 4.4 67.8 1.0

Iron binding site 9 out of 12 in the III2IV Respiratory Supercomplex From Saccharomyces Cerevisiae


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of III2IV Respiratory Supercomplex From Saccharomyces Cerevisiae within 5.0Å range: probe atom residue distance (Å) B Occ P:Fe302 b:152.8 occ:1.00 FE1 P:FES302 0.0 152.8 1.0 S1 P:FES302 2.2 147.3 1.0 S2 P:FES302 2.2 145.8 1.0 SG P:CYS159 2.3 107.8 1.0 SG P:CYS178 2.3 103.5 1.0 FE2 P:FES302 2.7 155.4 1.0 ND1 P:HIS181 3.3 111.3 1.0 CB P:CYS159 3.4 101.9 1.0 SG P:CYS164 3.6 99.2 1.0 CB P:CYS178 3.8 101.3 1.0 CB P:CYS180 4.0 104.3 1.0 CE1 P:HIS181 4.1 111.5 1.0 CG P:HIS181 4.3 110.7 1.0 CB P:HIS161 4.3 105.9 1.0 SG P:CYS180 4.5 110.3 1.0 CB P:HIS181 4.6 109.2 1.0 N P:HIS181 4.6 109.9 1.0 OG P:SER183 4.6 99.9 1.0 CB P:SER183 4.7 99.8 1.0 ND1 P:HIS161 4.8 108.3 1.0 CA P:CYS159 4.8 101.2 1.0

Iron binding site 10 out of 12 in the III2IV Respiratory Supercomplex From Saccharomyces Cerevisiae


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of III2IV Respiratory Supercomplex From Saccharomyces Cerevisiae within 5.0Å range: probe atom residue distance (Å) B Occ P:Fe302 b:155.4 occ:1.00 FE2 P:FES302 0.0 155.4 1.0 ND1 P:HIS181 1.9 111.3 1.0 CE1 P:HIS181 2.0 111.5 1.0 ND1 P:HIS161 2.2 108.3 1.0 S2 P:FES302 2.2 145.8 1.0 S1 P:FES302 2.2 147.3 1.0 FE1 P:FES302 2.7 152.8 1.0 CG P:HIS181 2.8 110.7 1.0 NE2 P:HIS181 2.9 111.2 1.0 CG P:HIS161 2.9 106.8 1.0 CB P:HIS161 2.9 105.9 1.0 CD2 P:HIS181 3.3 109.9 1.0 CE1 P:HIS161 3.4 107.6 1.0 CB P:HIS181 3.8 109.2 1.0 CD2 P:HIS161 4.2 106.0 1.0 SG P:CYS159 4.3 107.8 1.0 CA P:HIS161 4.3 107.3 1.0 NE2 P:HIS161 4.3 107.4 1.0 N P:LEU162 4.4 98.6 1.0 SG P:CYS178 4.6 103.5 1.0 O P:PRO195 4.7 92.3 1.0 C P:HIS161 4.8 107.5 1.0 CB P:CYS180 4.8 104.3 1.0 N P:HIS181 4.8 109.9 1.0 N P:HIS161 4.9 106.4 1.0 CA P:HIS181 4.9 109.5 1.0

A.P.Lobez, F.Wu, J.M.Di Trani, J.L.Rubinstein, M.Oliveberg, P.Brzezinski, A.Moe. Electron Transfer in the Respiratory Chain at Low Salinity. Nat Commun V. 15 8241 2024.
ISSN: ESSN 2041-1723
PubMed: 39300056
DOI: 10.1038/S41467-024-52475-3