Iron in PDB 9fy7: Dye Type Peroxidase Aa From Streptomyces Lividans with N3 Ligand By Serial Electron Diffraction (Serialed)
Iron Binding Sites:
The binding sites of Iron atom in the Dye Type Peroxidase Aa From Streptomyces Lividans with N3 Ligand By Serial Electron Diffraction (Serialed)
(pdb code 9fy7). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the
Dye Type Peroxidase Aa From Streptomyces Lividans with N3 Ligand By Serial Electron Diffraction (Serialed), PDB code: 9fy7:
Jump to Iron binding site number:
1;
2;
Iron binding site 1 out
of 2 in 9fy7
Go back to
Iron Binding Sites List in 9fy7
Iron binding site 1 out
of 2 in the Dye Type Peroxidase Aa From Streptomyces Lividans with N3 Ligand By Serial Electron Diffraction (Serialed)
 Mono view
 Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Dye Type Peroxidase Aa From Streptomyces Lividans with N3 Ligand By Serial Electron Diffraction (Serialed) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe502
b:5.4
occ:1.00
|
FE
|
A:HEM502
|
0.0
|
5.4
|
1.0
|
NA
|
A:HEM502
|
2.0
|
6.5
|
1.0
|
NB
|
A:HEM502
|
2.0
|
5.4
|
1.0
|
ND
|
A:HEM502
|
2.0
|
5.8
|
1.0
|
NC
|
A:HEM502
|
2.1
|
5.5
|
1.0
|
NE2
|
A:HIS326
|
2.1
|
5.2
|
1.0
|
N3
|
A:AZI501
|
2.3
|
9.0
|
1.0
|
CE1
|
A:HIS326
|
3.0
|
7.9
|
1.0
|
C4A
|
A:HEM502
|
3.0
|
6.1
|
1.0
|
C1B
|
A:HEM502
|
3.0
|
6.6
|
1.0
|
C1A
|
A:HEM502
|
3.0
|
7.4
|
1.0
|
C4D
|
A:HEM502
|
3.0
|
6.6
|
1.0
|
C4B
|
A:HEM502
|
3.1
|
5.7
|
1.0
|
C1D
|
A:HEM502
|
3.1
|
5.9
|
1.0
|
C4C
|
A:HEM502
|
3.1
|
6.8
|
1.0
|
C1C
|
A:HEM502
|
3.1
|
6.2
|
1.0
|
CD2
|
A:HIS326
|
3.1
|
6.2
|
1.0
|
HE1
|
A:HIS326
|
3.1
|
9.5
|
1.0
|
N2
|
A:AZI501
|
3.2
|
12.5
|
1.0
|
HD2
|
A:HIS326
|
3.3
|
7.5
|
1.0
|
CHB
|
A:HEM502
|
3.4
|
5.0
|
1.0
|
CHA
|
A:HEM502
|
3.4
|
5.5
|
1.0
|
CHC
|
A:HEM502
|
3.4
|
6.2
|
1.0
|
CHD
|
A:HEM502
|
3.4
|
5.0
|
1.0
|
HH11
|
A:ARG342
|
3.7
|
8.0
|
1.0
|
NH1
|
A:ARG342
|
4.1
|
6.6
|
1.0
|
ND1
|
A:HIS326
|
4.1
|
7.8
|
1.0
|
N1
|
A:AZI501
|
4.2
|
10.8
|
1.0
|
HE1
|
A:PHE363
|
4.2
|
13.5
|
1.0
|
CG
|
A:HIS326
|
4.2
|
6.4
|
1.0
|
C2B
|
A:HEM502
|
4.2
|
5.5
|
1.0
|
C2A
|
A:HEM502
|
4.2
|
4.8
|
1.0
|
C3B
|
A:HEM502
|
4.2
|
6.7
|
1.0
|
HH12
|
A:ARG342
|
4.3
|
8.0
|
1.0
|
C3D
|
A:HEM502
|
4.3
|
6.1
|
1.0
|
C3A
|
A:HEM502
|
4.3
|
7.4
|
1.0
|
C2D
|
A:HEM502
|
4.3
|
5.6
|
1.0
|
C2C
|
A:HEM502
|
4.3
|
7.1
|
1.0
|
HHB
|
A:HEM502
|
4.3
|
6.0
|
1.0
|
C3C
|
A:HEM502
|
4.3
|
6.5
|
1.0
|
HHA
|
A:HEM502
|
4.3
|
6.6
|
1.0
|
HD3
|
A:ARG342
|
4.4
|
9.2
|
1.0
|
HD2
|
A:ARG342
|
4.4
|
9.2
|
1.0
|
HHC
|
A:HEM502
|
4.4
|
7.5
|
1.0
|
HHD
|
A:HEM502
|
4.4
|
6.0
|
1.0
|
HE1
|
A:PHE297
|
4.8
|
10.0
|
1.0
|
CD
|
A:ARG342
|
4.8
|
7.6
|
1.0
|
OD1
|
A:ASP239
|
4.9
|
9.4
|
1.0
|
CZ
|
A:ARG342
|
4.9
|
6.7
|
1.0
|
HD1
|
A:HIS326
|
4.9
|
9.5
|
1.0
|
|
Iron binding site 2 out
of 2 in 9fy7
Go back to
Iron Binding Sites List in 9fy7
Iron binding site 2 out
of 2 in the Dye Type Peroxidase Aa From Streptomyces Lividans with N3 Ligand By Serial Electron Diffraction (Serialed)
 Mono view
 Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Dye Type Peroxidase Aa From Streptomyces Lividans with N3 Ligand By Serial Electron Diffraction (Serialed) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe502
b:7.8
occ:1.00
|
FE
|
B:HEM502
|
0.0
|
7.8
|
1.0
|
N3
|
B:AZI501
|
2.0
|
13.0
|
1.0
|
ND
|
B:HEM502
|
2.0
|
7.4
|
1.0
|
NB
|
B:HEM502
|
2.0
|
8.6
|
1.0
|
NC
|
B:HEM502
|
2.0
|
8.0
|
1.0
|
NA
|
B:HEM502
|
2.0
|
7.7
|
1.0
|
NE2
|
B:HIS326
|
2.2
|
6.8
|
1.0
|
N2
|
B:AZI501
|
2.9
|
22.2
|
1.0
|
C1D
|
B:HEM502
|
3.0
|
7.7
|
1.0
|
C4D
|
B:HEM502
|
3.0
|
7.9
|
1.0
|
C1B
|
B:HEM502
|
3.0
|
9.2
|
1.0
|
C4A
|
B:HEM502
|
3.0
|
9.1
|
1.0
|
C4B
|
B:HEM502
|
3.0
|
7.5
|
1.0
|
C4C
|
B:HEM502
|
3.0
|
9.2
|
1.0
|
C1C
|
B:HEM502
|
3.1
|
9.1
|
1.0
|
C1A
|
B:HEM502
|
3.1
|
7.7
|
1.0
|
CE1
|
B:HIS326
|
3.2
|
7.6
|
1.0
|
CD2
|
B:HIS326
|
3.2
|
9.8
|
1.0
|
HE1
|
B:HIS326
|
3.3
|
9.2
|
1.0
|
HD2
|
B:HIS326
|
3.4
|
11.7
|
1.0
|
CHC
|
B:HEM502
|
3.4
|
6.8
|
1.0
|
CHD
|
B:HEM502
|
3.4
|
6.9
|
1.0
|
CHB
|
B:HEM502
|
3.4
|
8.9
|
1.0
|
CHA
|
B:HEM502
|
3.4
|
8.8
|
1.0
|
HH11
|
B:ARG342
|
3.7
|
11.9
|
1.0
|
N1
|
B:AZI501
|
4.0
|
31.7
|
1.0
|
NH1
|
B:ARG342
|
4.1
|
9.9
|
1.0
|
C2D
|
B:HEM502
|
4.2
|
6.5
|
1.0
|
C3D
|
B:HEM502
|
4.2
|
7.8
|
1.0
|
HH12
|
B:ARG342
|
4.2
|
11.9
|
1.0
|
C2B
|
B:HEM502
|
4.3
|
7.9
|
1.0
|
C3A
|
B:HEM502
|
4.3
|
9.8
|
1.0
|
C3C
|
B:HEM502
|
4.3
|
9.6
|
1.0
|
C3B
|
B:HEM502
|
4.3
|
9.6
|
1.0
|
C2C
|
B:HEM502
|
4.3
|
8.1
|
1.0
|
C2A
|
B:HEM502
|
4.3
|
9.4
|
1.0
|
ND1
|
B:HIS326
|
4.3
|
10.1
|
1.0
|
CG
|
B:HIS326
|
4.4
|
8.0
|
1.0
|
HD2
|
B:ARG342
|
4.4
|
11.3
|
1.0
|
HHC
|
B:HEM502
|
4.4
|
8.2
|
1.0
|
HHD
|
B:HEM502
|
4.4
|
8.3
|
1.0
|
HHB
|
B:HEM502
|
4.4
|
10.8
|
1.0
|
HHA
|
B:HEM502
|
4.4
|
10.6
|
1.0
|
HD3
|
B:ARG342
|
4.4
|
11.3
|
1.0
|
HE2
|
B:PHE363
|
4.6
|
15.2
|
1.0
|
CD
|
B:ARG342
|
4.8
|
9.4
|
1.0
|
HE1
|
B:PHE297
|
4.8
|
14.9
|
1.0
|
CZ
|
B:ARG342
|
4.8
|
9.3
|
1.0
|
OD1
|
B:ASP239
|
5.0
|
20.9
|
1.0
|
|
Reference:
G.Hofer,
L.Wang,
L.Pacoste,
P.Hager,
A.Fonjallaz,
L.Williams,
J.Worrall,
R.Steiner,
H.Xu,
X.Zou.
Universal Serial Electron Diffraction For High Quality Protein Structures To Be Published.
Page generated: Fri Aug 8 06:05:22 2025
|