Iron in PDB 9fyh: Dye Type Peroxidase Aa From Streptomyces Lividans By Microcrystal Electron Diffraction (Microed/3D Ed)
Iron Binding Sites:
The binding sites of Iron atom in the Dye Type Peroxidase Aa From Streptomyces Lividans By Microcrystal Electron Diffraction (Microed/3D Ed)
(pdb code 9fyh). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the
Dye Type Peroxidase Aa From Streptomyces Lividans By Microcrystal Electron Diffraction (Microed/3D Ed), PDB code: 9fyh:
Jump to Iron binding site number:
1;
2;
Iron binding site 1 out
of 2 in 9fyh
Go back to
Iron Binding Sites List in 9fyh
Iron binding site 1 out
of 2 in the Dye Type Peroxidase Aa From Streptomyces Lividans By Microcrystal Electron Diffraction (Microed/3D Ed)
 Mono view
 Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Dye Type Peroxidase Aa From Streptomyces Lividans By Microcrystal Electron Diffraction (Microed/3D Ed) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe501
b:6.8
occ:1.00
|
FE
|
A:HEM501
|
0.0
|
6.8
|
1.0
|
NB
|
A:HEM501
|
2.0
|
10.0
|
1.0
|
ND
|
A:HEM501
|
2.0
|
10.2
|
1.0
|
NC
|
A:HEM501
|
2.1
|
9.3
|
1.0
|
NA
|
A:HEM501
|
2.1
|
10.7
|
1.0
|
NE2
|
A:HIS326
|
2.3
|
10.4
|
1.0
|
C1B
|
A:HEM501
|
3.0
|
12.2
|
1.0
|
C4A
|
A:HEM501
|
3.1
|
10.8
|
1.0
|
C1D
|
A:HEM501
|
3.1
|
10.2
|
1.0
|
C4B
|
A:HEM501
|
3.1
|
10.2
|
1.0
|
C4D
|
A:HEM501
|
3.1
|
9.2
|
1.0
|
C4C
|
A:HEM501
|
3.1
|
9.3
|
1.0
|
C1A
|
A:HEM501
|
3.1
|
11.0
|
1.0
|
C1C
|
A:HEM501
|
3.1
|
7.7
|
1.0
|
CD2
|
A:HIS326
|
3.2
|
12.0
|
1.0
|
HD2
|
A:HIS326
|
3.2
|
14.4
|
1.0
|
O
|
A:HOH632
|
3.3
|
10.3
|
1.0
|
CE1
|
A:HIS326
|
3.4
|
11.2
|
1.0
|
CHB
|
A:HEM501
|
3.4
|
12.4
|
1.0
|
CHD
|
A:HEM501
|
3.4
|
11.9
|
1.0
|
CHC
|
A:HEM501
|
3.4
|
8.6
|
1.0
|
CHA
|
A:HEM501
|
3.4
|
9.0
|
1.0
|
HH11
|
A:ARG342
|
3.5
|
12.6
|
1.0
|
HE1
|
A:HIS326
|
3.6
|
13.5
|
1.0
|
NH1
|
A:ARG342
|
4.0
|
10.4
|
1.0
|
HH12
|
A:ARG342
|
4.1
|
12.6
|
1.0
|
C3A
|
A:HEM501
|
4.3
|
9.2
|
1.0
|
C2B
|
A:HEM501
|
4.3
|
10.5
|
1.0
|
C2D
|
A:HEM501
|
4.3
|
9.3
|
1.0
|
C3B
|
A:HEM501
|
4.3
|
10.3
|
1.0
|
C3D
|
A:HEM501
|
4.3
|
10.8
|
1.0
|
C2A
|
A:HEM501
|
4.3
|
9.9
|
1.0
|
C2C
|
A:HEM501
|
4.3
|
7.3
|
1.0
|
C3C
|
A:HEM501
|
4.3
|
8.2
|
1.0
|
CG
|
A:HIS326
|
4.4
|
11.8
|
1.0
|
HE2
|
A:PHE363
|
4.4
|
15.5
|
1.0
|
HHB
|
A:HEM501
|
4.4
|
14.9
|
1.0
|
HHD
|
A:HEM501
|
4.4
|
14.3
|
1.0
|
HHC
|
A:HEM501
|
4.4
|
10.3
|
1.0
|
HHA
|
A:HEM501
|
4.4
|
10.8
|
1.0
|
ND1
|
A:HIS326
|
4.4
|
11.9
|
1.0
|
HD3
|
A:ARG342
|
4.4
|
15.1
|
1.0
|
HD2
|
A:ARG342
|
4.5
|
15.1
|
1.0
|
O
|
A:HOH645
|
4.5
|
14.1
|
1.0
|
HE1
|
A:PHE297
|
4.8
|
17.5
|
1.0
|
CZ
|
A:ARG342
|
4.8
|
12.8
|
1.0
|
CD
|
A:ARG342
|
4.9
|
12.6
|
1.0
|
OD1
|
A:ASP239
|
4.9
|
13.5
|
1.0
|
|
Iron binding site 2 out
of 2 in 9fyh
Go back to
Iron Binding Sites List in 9fyh
Iron binding site 2 out
of 2 in the Dye Type Peroxidase Aa From Streptomyces Lividans By Microcrystal Electron Diffraction (Microed/3D Ed)
 Mono view
 Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Dye Type Peroxidase Aa From Streptomyces Lividans By Microcrystal Electron Diffraction (Microed/3D Ed) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe501
b:12.9
occ:1.00
|
FE
|
B:HEM501
|
0.0
|
12.9
|
1.0
|
NC
|
B:HEM501
|
2.0
|
14.7
|
1.0
|
NA
|
B:HEM501
|
2.0
|
9.4
|
1.0
|
ND
|
B:HEM501
|
2.0
|
9.5
|
1.0
|
NB
|
B:HEM501
|
2.1
|
12.2
|
1.0
|
NE2
|
B:HIS326
|
2.2
|
11.7
|
1.0
|
C4C
|
B:HEM501
|
3.0
|
12.9
|
1.0
|
C4A
|
B:HEM501
|
3.0
|
10.3
|
1.0
|
C1D
|
B:HEM501
|
3.1
|
9.1
|
1.0
|
C1A
|
B:HEM501
|
3.1
|
9.6
|
1.0
|
C1C
|
B:HEM501
|
3.1
|
11.6
|
1.0
|
C1B
|
B:HEM501
|
3.1
|
13.2
|
1.0
|
C4D
|
B:HEM501
|
3.1
|
9.3
|
1.0
|
C4B
|
B:HEM501
|
3.1
|
12.8
|
1.0
|
O
|
B:HOH658
|
3.2
|
12.4
|
1.0
|
CD2
|
B:HIS326
|
3.2
|
12.3
|
1.0
|
CE1
|
B:HIS326
|
3.2
|
13.1
|
1.0
|
HD2
|
B:HIS326
|
3.3
|
14.9
|
1.0
|
HE1
|
B:HIS326
|
3.4
|
15.7
|
1.0
|
CHD
|
B:HEM501
|
3.4
|
12.3
|
1.0
|
CHB
|
B:HEM501
|
3.4
|
12.9
|
1.0
|
CHA
|
B:HEM501
|
3.4
|
10.1
|
1.0
|
CHC
|
B:HEM501
|
3.4
|
13.4
|
1.0
|
HH11
|
B:ARG342
|
3.5
|
12.8
|
1.0
|
NH1
|
B:ARG342
|
3.9
|
10.6
|
1.0
|
HH12
|
B:ARG342
|
3.9
|
12.8
|
1.0
|
C3A
|
B:HEM501
|
4.3
|
11.3
|
1.0
|
C3C
|
B:HEM501
|
4.3
|
9.3
|
1.0
|
C2A
|
B:HEM501
|
4.3
|
9.5
|
1.0
|
C2C
|
B:HEM501
|
4.3
|
9.3
|
1.0
|
C2D
|
B:HEM501
|
4.3
|
10.5
|
1.0
|
C3D
|
B:HEM501
|
4.3
|
9.4
|
1.0
|
C2B
|
B:HEM501
|
4.3
|
12.7
|
1.0
|
ND1
|
B:HIS326
|
4.3
|
14.6
|
1.0
|
C3B
|
B:HEM501
|
4.3
|
12.7
|
1.0
|
CG
|
B:HIS326
|
4.3
|
15.3
|
1.0
|
HHD
|
B:HEM501
|
4.4
|
14.8
|
1.0
|
HHB
|
B:HEM501
|
4.4
|
15.6
|
1.0
|
HHA
|
B:HEM501
|
4.4
|
12.1
|
1.0
|
HHC
|
B:HEM501
|
4.4
|
16.1
|
1.0
|
HD2
|
B:ARG342
|
4.5
|
13.9
|
1.0
|
HD3
|
B:ARG342
|
4.6
|
13.9
|
1.0
|
HE2
|
B:PHE363
|
4.6
|
14.8
|
1.0
|
HE1
|
B:PHE297
|
4.7
|
16.4
|
1.0
|
CZ
|
B:ARG342
|
4.8
|
9.8
|
1.0
|
OD2
|
B:ASP239
|
4.8
|
18.9
|
1.0
|
CD
|
B:ARG342
|
4.9
|
11.6
|
1.0
|
|
Reference:
G.Hofer,
L.Wang,
L.Pacoste,
P.Hager,
A.Fonjallaz,
L.Williams,
J.Worrall,
R.Steiner,
H.Xu,
X.Zou.
Universal Serial Electron Diffraction For High Quality Protein Structures To Be Published.
Page generated: Fri Aug 8 06:05:22 2025
|