Iron in PDB 9gbi: Cryo-Em Structure of Arabidopsis Thaliana Psi-Lhci Wild-Type

All present enzymatic activity of Cryo-Em Structure of Arabidopsis Thaliana Psi-Lhci Wild-Type:
1.97.1.12;

The structure of Cryo-Em Structure of Arabidopsis Thaliana Psi-Lhci Wild-Type also contains other interesting chemical elements:

Magnesium

(Mg)

155 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Iron atom in the Cryo-Em Structure of Arabidopsis Thaliana Psi-Lhci Wild-Type (pdb code 9gbi). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 12 binding sites of Iron where determined in the Cryo-Em Structure of Arabidopsis Thaliana Psi-Lhci Wild-Type, PDB code: 9gbi:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 12 in the Cryo-Em Structure of Arabidopsis Thaliana Psi-Lhci Wild-Type


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Cryo-Em Structure of Arabidopsis Thaliana Psi-Lhci Wild-Type within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe850 b:76.0 occ:1.00 FE1 A:SF4850 0.0 76.0 1.0 SG B:CYS568 2.3 44.9 1.0 S2 A:SF4850 2.3 67.3 1.0 S3 A:SF4850 2.3 60.7 1.0 S4 A:SF4850 2.3 77.4 1.0 FE4 A:SF4850 2.7 55.9 1.0 FE3 A:SF4850 2.7 64.6 1.0 FE2 A:SF4850 2.7 76.5 1.0 CB B:CYS568 3.6 36.7 1.0 S1 A:SF4850 3.9 58.6 1.0 CA B:CYS568 4.3 38.9 1.0 CD1 A:ILE719 4.4 44.4 1.0 CZ3 B:TRP667 4.5 39.9 1.0 SG B:CYS559 4.7 47.1 1.0 N B:CYS568 4.8 38.4 1.0 CB B:CYS559 4.8 31.9 1.0 SG A:CYS573 4.9 57.1 1.0 O B:THR567 4.9 42.6 1.0 SG A:CYS582 4.9 59.6 1.0

Iron binding site 2 out of 12 in the Cryo-Em Structure of Arabidopsis Thaliana Psi-Lhci Wild-Type


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Cryo-Em Structure of Arabidopsis Thaliana Psi-Lhci Wild-Type within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe850 b:76.5 occ:1.00 FE2 A:SF4850 0.0 76.5 1.0 SG A:CYS582 2.3 59.6 1.0 S1 A:SF4850 2.3 58.6 1.0 S3 A:SF4850 2.3 60.7 1.0 S4 A:SF4850 2.3 77.4 1.0 FE3 A:SF4850 2.7 64.6 1.0 FE4 A:SF4850 2.7 55.9 1.0 FE1 A:SF4850 2.7 76.0 1.0 CB A:CYS582 3.3 40.1 1.0 S2 A:SF4850 3.9 67.3 1.0 CA A:CYS582 4.1 37.6 1.0 CZ3 B:TRP667 4.4 39.9 1.0 CE3 B:TRP667 4.4 42.6 1.0 N A:CYS582 4.5 40.4 1.0 CD1 B:ILE702 4.6 32.9 1.0 SG A:CYS573 4.6 57.1 1.0 CB A:CYS573 4.7 47.5 1.0 SG B:CYS559 4.8 47.1 1.0 SG B:CYS568 4.9 44.9 1.0

Iron binding site 3 out of 12 in the Cryo-Em Structure of Arabidopsis Thaliana Psi-Lhci Wild-Type


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Cryo-Em Structure of Arabidopsis Thaliana Psi-Lhci Wild-Type within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe850 b:64.6 occ:1.00 FE3 A:SF4850 0.0 64.6 1.0 SG A:CYS573 2.3 57.1 1.0 S2 A:SF4850 2.3 67.3 1.0 S4 A:SF4850 2.3 77.4 1.0 S1 A:SF4850 2.3 58.6 1.0 FE2 A:SF4850 2.7 76.5 1.0 FE4 A:SF4850 2.7 55.9 1.0 FE1 A:SF4850 2.7 76.0 1.0 CB A:CYS573 3.3 47.5 1.0 S3 A:SF4850 3.9 60.7 1.0 SG A:CYS582 4.5 59.6 1.0 CA A:CYS573 4.7 37.4 1.0 SG B:CYS568 4.7 44.9 1.0 SG B:CYS559 4.8 47.1 1.0 CG B:PRO562 4.9 30.6 1.0 N A:CYS573 5.0 45.5 1.0

Iron binding site 4 out of 12 in the Cryo-Em Structure of Arabidopsis Thaliana Psi-Lhci Wild-Type


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Cryo-Em Structure of Arabidopsis Thaliana Psi-Lhci Wild-Type within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe850 b:55.9 occ:1.00 FE4 A:SF4850 0.0 55.9 1.0 SG B:CYS559 2.3 47.1 1.0 S1 A:SF4850 2.3 58.6 1.0 S2 A:SF4850 2.3 67.3 1.0 S3 A:SF4850 2.3 60.7 1.0 FE1 A:SF4850 2.7 76.0 1.0 FE2 A:SF4850 2.7 76.5 1.0 FE3 A:SF4850 2.7 64.6 1.0 CB B:CYS559 3.2 31.9 1.0 S4 A:SF4850 3.9 77.4 1.0 SG B:CYS568 4.6 44.9 1.0 CA B:CYS559 4.6 30.0 1.0 SG A:CYS582 4.7 59.6 1.0 SG A:CYS573 4.8 57.1 1.0 CG A:PRO576 4.9 37.8 1.0 O B:THR567 4.9 42.6 1.0 N B:GLY561 4.9 36.9 1.0 CD1 B:ILE702 4.9 32.9 1.0 N A:PRO576 5.0 35.8 1.0

Iron binding site 5 out of 12 in the Cryo-Em Structure of Arabidopsis Thaliana Psi-Lhci Wild-Type


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Cryo-Em Structure of Arabidopsis Thaliana Psi-Lhci Wild-Type within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe101 b:68.1 occ:1.00 FE1 C:SF4101 0.0 68.1 1.0 SG C:CYS51 2.3 39.4 1.0 S4 C:SF4101 2.3 51.1 1.0 S3 C:SF4101 2.3 39.6 1.0 S2 C:SF4101 2.3 46.3 1.0 FE2 C:SF4101 2.7 63.7 1.0 FE4 C:SF4101 2.7 59.9 1.0 FE3 C:SF4101 2.7 65.3 1.0 N C:CYS51 3.7 32.3 1.0 N C:LYS52 3.7 34.3 1.0 CB C:CYS51 3.8 24.9 1.0 S1 C:SF4101 3.9 49.5 1.0 CD C:PRO22 3.9 37.8 1.0 CA C:CYS51 4.1 28.0 1.0 N C:ARG53 4.2 40.5 1.0 C C:CYS51 4.2 31.1 1.0 N C:GLY50 4.5 39.1 1.0 CA C:LYS52 4.6 30.7 1.0 CG2 C:VAL49 4.6 33.1 1.0 C C:GLY50 4.6 33.3 1.0 SG C:CYS21 4.7 49.1 1.0 CG C:PRO22 4.7 33.2 1.0 SG C:CYS54 4.7 38.7 1.0 SG C:CYS48 4.8 44.2 1.0 CA C:GLY50 4.9 31.9 1.0 CB C:ARG53 4.9 30.1 1.0 C C:LYS52 4.9 41.3 1.0

Iron binding site 6 out of 12 in the Cryo-Em Structure of Arabidopsis Thaliana Psi-Lhci Wild-Type


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Cryo-Em Structure of Arabidopsis Thaliana Psi-Lhci Wild-Type within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe101 b:63.7 occ:1.00 FE2 C:SF4101 0.0 63.7 1.0 SG C:CYS21 2.3 49.1 1.0 S3 C:SF4101 2.3 39.6 1.0 S1 C:SF4101 2.3 49.5 1.0 S4 C:SF4101 2.3 51.1 1.0 FE1 C:SF4101 2.7 68.1 1.0 FE4 C:SF4101 2.7 59.9 1.0 FE3 C:SF4101 2.7 65.3 1.0 CB C:CYS21 3.4 33.6 1.0 CA C:CYS21 3.8 28.1 1.0 S2 C:SF4101 3.9 46.3 1.0 CD C:PRO22 3.9 37.8 1.0 CB C:VAL25 4.2 33.7 1.0 CG2 C:VAL25 4.3 38.8 1.0 OG1 C:THR23 4.4 42.9 1.0 N C:PRO22 4.5 39.8 1.0 C C:CYS21 4.6 41.1 1.0 CD1 C:LEU26 4.7 27.3 1.0 SG C:CYS51 4.7 39.4 1.0 SG C:CYS54 4.7 38.7 1.0 SG C:CYS48 4.8 44.2 1.0 CG1 C:VAL25 4.9 41.0 1.0 N C:CYS21 5.0 33.2 1.0

Iron binding site 7 out of 12 in the Cryo-Em Structure of Arabidopsis Thaliana Psi-Lhci Wild-Type


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Cryo-Em Structure of Arabidopsis Thaliana Psi-Lhci Wild-Type within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe101 b:65.3 occ:1.00 FE3 C:SF4101 0.0 65.3 1.0 SG C:CYS54 2.3 38.7 1.0 S4 C:SF4101 2.3 51.1 1.0 S2 C:SF4101 2.3 46.3 1.0 S1 C:SF4101 2.3 49.5 1.0 FE1 C:SF4101 2.7 68.1 1.0 FE4 C:SF4101 2.7 59.9 1.0 FE2 C:SF4101 2.7 63.7 1.0 CB C:CYS54 3.5 42.9 1.0 S3 C:SF4101 3.9 39.6 1.0 N C:CYS54 4.0 35.7 1.0 CG2 C:VAL67 4.3 36.7 1.0 CA C:CYS54 4.4 36.1 1.0 N C:ARG53 4.5 40.5 1.0 N C:LYS52 4.5 34.3 1.0 CA C:LYS52 4.6 30.7 1.0 CD1 C:LEU26 4.7 27.3 1.0 SG C:CYS48 4.8 44.2 1.0 SG C:CYS51 4.8 39.4 1.0 SG C:CYS21 4.8 49.1 1.0 C C:LYS52 5.0 41.3 1.0

Iron binding site 8 out of 12 in the Cryo-Em Structure of Arabidopsis Thaliana Psi-Lhci Wild-Type


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Cryo-Em Structure of Arabidopsis Thaliana Psi-Lhci Wild-Type within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe101 b:59.9 occ:1.00 FE4 C:SF4101 0.0 59.9 1.0 SG C:CYS48 2.3 44.2 1.0 S3 C:SF4101 2.3 39.6 1.0 S2 C:SF4101 2.3 46.3 1.0 S1 C:SF4101 2.3 49.5 1.0 FE1 C:SF4101 2.7 68.1 1.0 FE2 C:SF4101 2.7 63.7 1.0 FE3 C:SF4101 2.7 65.3 1.0 CB C:CYS48 3.6 36.7 1.0 S4 C:SF4101 3.9 51.1 1.0 CA C:CYS48 4.0 35.5 1.0 N C:GLY50 4.1 39.1 1.0 N C:VAL49 4.2 45.0 1.0 C C:CYS48 4.6 44.2 1.0 CA C:GLY50 4.7 31.9 1.0 SG C:CYS21 4.8 49.1 1.0 SG C:CYS54 4.8 38.7 1.0 CG2 C:VAL25 4.8 38.8 1.0 SG C:CYS51 4.8 39.4 1.0 CG2 C:VAL5 4.9 32.7 1.0 N C:CYS51 4.9 32.3 1.0 CG2 C:VAL67 5.0 36.7 1.0

Iron binding site 9 out of 12 in the Cryo-Em Structure of Arabidopsis Thaliana Psi-Lhci Wild-Type


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Cryo-Em Structure of Arabidopsis Thaliana Psi-Lhci Wild-Type within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe102 b:74.1 occ:1.00 FE1 C:SF4102 0.0 74.1 1.0 SG C:CYS58 2.3 54.9 1.0 S2 C:SF4102 2.3 55.0 1.0 S4 C:SF4102 2.3 51.1 1.0 S3 C:SF4102 2.3 52.2 1.0 FE3 C:SF4102 2.7 70.6 1.0 FE4 C:SF4102 2.7 59.9 1.0 FE2 C:SF4102 2.7 69.7 1.0 CB C:CYS58 3.4 49.0 1.0 S1 C:SF4102 3.9 48.5 1.0 CA C:CYS58 3.9 47.1 1.0 CB C:SER64 4.4 37.0 1.0 CG1 C:VAL65 4.4 27.3 1.0 CD C:PRO59 4.5 46.7 1.0 C C:CYS58 4.6 50.3 1.0 OG C:SER64 4.7 39.0 1.0 OG1 C:THR60 4.7 46.7 1.0 SG C:CYS14 4.7 61.0 1.0 SG C:CYS17 4.7 56.4 1.0 O C:ALA57 4.8 54.4 1.0 N C:PRO59 4.8 49.3 1.0 N C:SER64 4.9 37.4 1.0 SG C:CYS11 4.9 55.9 1.0 N C:VAL65 5.0 35.2 1.0

Iron binding site 10 out of 12 in the Cryo-Em Structure of Arabidopsis Thaliana Psi-Lhci Wild-Type


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Cryo-Em Structure of Arabidopsis Thaliana Psi-Lhci Wild-Type within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe102 b:69.7 occ:1.00 FE2 C:SF4102 0.0 69.7 1.0 SG C:CYS17 2.3 56.4 1.0 S4 C:SF4102 2.3 51.1 1.0 S1 C:SF4102 2.3 48.5 1.0 S3 C:SF4102 2.3 52.2 1.0 FE4 C:SF4102 2.7 59.9 1.0 FE1 C:SF4102 2.7 74.1 1.0 FE3 C:SF4102 2.7 70.6 1.0 CB C:CYS17 3.3 37.6 1.0 S2 C:SF4102 3.9 55.0 1.0 N C:CYS17 3.9 40.8 1.0 CA C:CYS17 4.2 36.1 1.0 SG C:CYS11 4.6 55.9 1.0 CB C:ALA40 4.6 31.6 1.0 N C:GLN16 4.7 43.6 1.0 SG C:CYS58 4.8 54.9 1.0 SG C:CYS14 4.8 61.0 1.0 CE C:MET28 4.8 43.7 1.0 N C:THR15 4.9 45.4 1.0 CG1 C:VAL65 5.0 27.3 1.0

S.Capaldi, Z.Guardini, D.Montepietra, V.F.Pagliuca, A.Amelii, D.M.V.Bonnet, A.Chaves-Sanjuan, L.Dall'osto, R.Bassi. Structural Determinants For Red-Shifted Absorption in Higher-Plants Photosystem I To Be Published.