Iron in PDB 9gc2: Cryo-Em Structure of Arabidopsis Thaliana Psi-Lhci- A603-Nh Mutant

All present enzymatic activity of Cryo-Em Structure of Arabidopsis Thaliana Psi-Lhci- A603-Nh Mutant:
1.97.1.12;

The structure of Cryo-Em Structure of Arabidopsis Thaliana Psi-Lhci- A603-Nh Mutant also contains other interesting chemical elements:

Magnesium

(Mg)

154 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Iron atom in the Cryo-Em Structure of Arabidopsis Thaliana Psi-Lhci- A603-Nh Mutant (pdb code 9gc2). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 12 binding sites of Iron where determined in the Cryo-Em Structure of Arabidopsis Thaliana Psi-Lhci- A603-Nh Mutant, PDB code: 9gc2:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 12 in the Cryo-Em Structure of Arabidopsis Thaliana Psi-Lhci- A603-Nh Mutant


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Cryo-Em Structure of Arabidopsis Thaliana Psi-Lhci- A603-Nh Mutant within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe850 b:72.5 occ:1.00 FE1 A:SF4850 0.0 72.5 1.0 SG B:CYS568 2.3 68.7 1.0 S2 A:SF4850 2.3 81.4 1.0 S4 A:SF4850 2.3 86.0 1.0 S3 A:SF4850 2.3 85.1 1.0 FE4 A:SF4850 2.7 61.2 1.0 FE3 A:SF4850 2.7 68.5 1.0 FE2 A:SF4850 2.7 85.8 1.0 CB B:CYS568 3.6 58.3 1.0 S1 A:SF4850 3.9 76.0 1.0 CA B:CYS568 4.3 59.8 1.0 CZ3 B:TRP667 4.6 57.7 1.0 CB B:CYS559 4.6 62.5 1.0 CD1 A:ILE719 4.6 38.6 1.0 SG B:CYS559 4.7 64.1 1.0 N B:CYS568 4.7 62.5 1.0 SG A:CYS573 4.8 66.9 1.0 SG A:CYS582 4.9 55.4 1.0 O B:THR567 4.9 73.1 1.0

Iron binding site 2 out of 12 in the Cryo-Em Structure of Arabidopsis Thaliana Psi-Lhci- A603-Nh Mutant


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Cryo-Em Structure of Arabidopsis Thaliana Psi-Lhci- A603-Nh Mutant within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe850 b:85.8 occ:1.00 FE2 A:SF4850 0.0 85.8 1.0 SG A:CYS582 2.3 55.4 1.0 S3 A:SF4850 2.3 85.1 1.0 S1 A:SF4850 2.3 76.0 1.0 S4 A:SF4850 2.3 86.0 1.0 FE3 A:SF4850 2.7 68.5 1.0 FE4 A:SF4850 2.7 61.2 1.0 FE1 A:SF4850 2.7 72.5 1.0 CB A:CYS582 3.3 36.1 1.0 S2 A:SF4850 3.9 81.4 1.0 CA A:CYS582 4.1 37.8 1.0 N A:CYS582 4.4 42.3 1.0 CB A:CYS573 4.5 55.1 1.0 SG A:CYS573 4.6 66.9 1.0 CE3 B:TRP667 4.6 62.1 1.0 CZ3 B:TRP667 4.7 57.7 1.0 SG B:CYS559 4.7 64.1 1.0 CD1 B:ILE702 4.8 53.3 1.0 SG B:CYS568 4.9 68.7 1.0

Iron binding site 3 out of 12 in the Cryo-Em Structure of Arabidopsis Thaliana Psi-Lhci- A603-Nh Mutant


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Cryo-Em Structure of Arabidopsis Thaliana Psi-Lhci- A603-Nh Mutant within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe850 b:68.5 occ:1.00 FE3 A:SF4850 0.0 68.5 1.0 SG A:CYS573 2.3 66.9 1.0 S2 A:SF4850 2.3 81.4 1.0 S4 A:SF4850 2.3 86.0 1.0 S1 A:SF4850 2.3 76.0 1.0 FE2 A:SF4850 2.7 85.8 1.0 FE1 A:SF4850 2.7 72.5 1.0 FE4 A:SF4850 2.7 61.2 1.0 CB A:CYS573 3.1 55.1 1.0 S3 A:SF4850 3.9 85.1 1.0 CA A:CYS573 4.6 46.8 1.0 SG A:CYS582 4.6 55.4 1.0 SG B:CYS568 4.7 68.7 1.0 SG B:CYS559 4.8 64.1 1.0 CD1 A:ILE719 4.9 38.6 1.0 CG B:PRO562 4.9 57.6 1.0

Iron binding site 4 out of 12 in the Cryo-Em Structure of Arabidopsis Thaliana Psi-Lhci- A603-Nh Mutant


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Cryo-Em Structure of Arabidopsis Thaliana Psi-Lhci- A603-Nh Mutant within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe850 b:61.2 occ:1.00 FE4 A:SF4850 0.0 61.2 1.0 SG B:CYS559 2.3 64.1 1.0 S1 A:SF4850 2.3 76.0 1.0 S3 A:SF4850 2.3 85.1 1.0 S2 A:SF4850 2.3 81.4 1.0 FE1 A:SF4850 2.7 72.5 1.0 FE2 A:SF4850 2.7 85.8 1.0 FE3 A:SF4850 2.7 68.5 1.0 CB B:CYS559 3.1 62.5 1.0 S4 A:SF4850 3.9 86.0 1.0 CA B:CYS559 4.6 61.9 1.0 SG B:CYS568 4.6 68.7 1.0 SG A:CYS582 4.7 55.4 1.0 N B:GLY561 4.8 55.1 1.0 SG A:CYS573 4.8 66.9 1.0 N A:PRO576 4.9 44.1 1.0 CG A:PRO576 4.9 48.2 1.0 O B:THR567 5.0 73.1 1.0

Iron binding site 5 out of 12 in the Cryo-Em Structure of Arabidopsis Thaliana Psi-Lhci- A603-Nh Mutant


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Cryo-Em Structure of Arabidopsis Thaliana Psi-Lhci- A603-Nh Mutant within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe101 b:80.8 occ:1.00 FE1 C:SF4101 0.0 80.8 1.0 SG C:CYS51 2.3 64.6 1.0 S3 C:SF4101 2.3 64.5 1.0 S4 C:SF4101 2.3 70.7 1.0 S2 C:SF4101 2.3 68.3 1.0 FE2 C:SF4101 2.7 76.3 1.0 FE4 C:SF4101 2.7 82.1 1.0 FE3 C:SF4101 2.7 63.3 1.0 N C:LYS52 3.6 41.5 1.0 N C:CYS51 3.7 41.8 1.0 CB C:CYS51 3.7 48.9 1.0 S1 C:SF4101 3.9 75.3 1.0 N C:ARG53 4.0 50.6 1.0 CA C:CYS51 4.0 39.4 1.0 CD C:PRO22 4.1 58.4 1.0 C C:CYS51 4.1 42.8 1.0 CA C:LYS52 4.4 38.6 1.0 C C:GLY50 4.6 51.0 1.0 SG C:CYS21 4.6 76.8 1.0 CB C:ARG53 4.7 45.0 1.0 N C:GLY50 4.7 57.3 1.0 SG C:CYS54 4.7 48.6 1.0 SG C:CYS48 4.7 65.0 1.0 N C:CYS54 4.7 49.1 1.0 C C:LYS52 4.7 45.3 1.0 CG2 C:VAL49 4.8 41.0 1.0 CA C:ARG53 4.9 47.2 1.0 CG C:PRO22 4.9 52.0 1.0 CA C:GLY50 5.0 52.6 1.0

Iron binding site 6 out of 12 in the Cryo-Em Structure of Arabidopsis Thaliana Psi-Lhci- A603-Nh Mutant


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Cryo-Em Structure of Arabidopsis Thaliana Psi-Lhci- A603-Nh Mutant within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe101 b:76.3 occ:1.00 FE2 C:SF4101 0.0 76.3 1.0 SG C:CYS21 2.3 76.8 1.0 S4 C:SF4101 2.3 70.7 1.0 S3 C:SF4101 2.3 64.5 1.0 S1 C:SF4101 2.3 75.3 1.0 FE1 C:SF4101 2.7 80.8 1.0 FE4 C:SF4101 2.7 82.1 1.0 FE3 C:SF4101 2.7 63.3 1.0 CB C:CYS21 3.4 49.2 1.0 S2 C:SF4101 3.9 68.3 1.0 CA C:CYS21 3.9 49.7 1.0 CD C:PRO22 4.1 58.4 1.0 CB C:VAL25 4.2 38.9 1.0 CG2 C:VAL25 4.4 51.0 1.0 N C:PRO22 4.6 55.9 1.0 SG C:CYS51 4.7 64.6 1.0 C C:CYS21 4.7 54.4 1.0 SG C:CYS54 4.7 48.6 1.0 SG C:CYS48 4.8 65.0 1.0 CG1 C:VAL25 4.9 49.5 1.0 CB C:CYS54 5.0 56.2 1.0

Iron binding site 7 out of 12 in the Cryo-Em Structure of Arabidopsis Thaliana Psi-Lhci- A603-Nh Mutant


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Cryo-Em Structure of Arabidopsis Thaliana Psi-Lhci- A603-Nh Mutant within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe101 b:63.3 occ:1.00 FE3 C:SF4101 0.0 63.3 1.0 SG C:CYS54 2.3 48.6 1.0 S4 C:SF4101 2.3 70.7 1.0 S1 C:SF4101 2.3 75.3 1.0 S2 C:SF4101 2.3 68.3 1.0 FE2 C:SF4101 2.7 76.3 1.0 FE4 C:SF4101 2.7 82.1 1.0 FE1 C:SF4101 2.7 80.8 1.0 CB C:CYS54 3.3 56.2 1.0 N C:CYS54 3.8 49.1 1.0 S3 C:SF4101 3.9 64.5 1.0 CA C:CYS54 4.2 50.0 1.0 CG2 C:VAL67 4.2 53.6 1.0 N C:ARG53 4.5 50.6 1.0 N C:LYS52 4.6 41.5 1.0 CA C:LYS52 4.6 38.6 1.0 SG C:CYS48 4.8 65.0 1.0 SG C:CYS51 4.8 64.6 1.0 SG C:CYS21 4.8 76.8 1.0 C C:LYS52 4.9 45.3 1.0

Iron binding site 8 out of 12 in the Cryo-Em Structure of Arabidopsis Thaliana Psi-Lhci- A603-Nh Mutant


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Cryo-Em Structure of Arabidopsis Thaliana Psi-Lhci- A603-Nh Mutant within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe101 b:82.1 occ:1.00 FE4 C:SF4101 0.0 82.1 1.0 SG C:CYS48 2.3 65.0 1.0 S2 C:SF4101 2.3 68.3 1.0 S3 C:SF4101 2.3 64.5 1.0 S1 C:SF4101 2.3 75.3 1.0 FE2 C:SF4101 2.7 76.3 1.0 FE1 C:SF4101 2.7 80.8 1.0 FE3 C:SF4101 2.7 63.3 1.0 CB C:CYS48 3.5 54.6 1.0 S4 C:SF4101 3.9 70.7 1.0 CA C:CYS48 4.0 50.1 1.0 N C:GLY50 4.1 57.3 1.0 N C:VAL49 4.2 48.3 1.0 C C:CYS48 4.5 55.9 1.0 CA C:GLY50 4.6 52.6 1.0 CG2 C:VAL5 4.7 43.2 1.0 N C:CYS51 4.7 41.8 1.0 CG2 C:VAL25 4.8 51.0 1.0 SG C:CYS21 4.8 76.8 1.0 SG C:CYS51 4.8 64.6 1.0 SG C:CYS54 4.9 48.6 1.0

Iron binding site 9 out of 12 in the Cryo-Em Structure of Arabidopsis Thaliana Psi-Lhci- A603-Nh Mutant


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Cryo-Em Structure of Arabidopsis Thaliana Psi-Lhci- A603-Nh Mutant within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe102 b:99.5 occ:1.00 FE1 C:SF4102 0.0 99.5 1.0 SG C:CYS58 2.3 69.5 1.0 S4 C:SF4102 2.3 86.0 1.0 S2 C:SF4102 2.3 76.1 1.0 S3 C:SF4102 2.3 74.0 1.0 FE3 C:SF4102 2.7 75.6 1.0 FE2 C:SF4102 2.7 90.3 1.0 FE4 C:SF4102 2.7 68.2 1.0 CB C:CYS58 3.5 58.5 1.0 S1 C:SF4102 3.9 79.9 1.0 CA C:CYS58 4.0 58.2 1.0 CB C:SER64 4.5 50.2 1.0 CG1 C:VAL65 4.5 47.3 1.0 CD C:PRO59 4.6 63.4 1.0 SG C:CYS14 4.7 84.5 1.0 C C:CYS58 4.7 58.8 1.0 SG C:CYS17 4.8 88.1 1.0 O C:ALA57 4.8 66.5 1.0 OG C:SER64 4.8 57.5 1.0 SG C:CYS11 4.9 62.4 1.0 N C:PRO59 4.9 63.2 1.0 OG1 C:THR60 4.9 53.5 1.0 CB C:CYS17 5.0 67.7 1.0 N C:SER64 5.0 52.4 1.0

Iron binding site 10 out of 12 in the Cryo-Em Structure of Arabidopsis Thaliana Psi-Lhci- A603-Nh Mutant


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Cryo-Em Structure of Arabidopsis Thaliana Psi-Lhci- A603-Nh Mutant within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe102 b:90.3 occ:1.00 FE2 C:SF4102 0.0 90.3 1.0 SG C:CYS17 2.3 88.1 1.0 S1 C:SF4102 2.3 79.9 1.0 S4 C:SF4102 2.3 86.0 1.0 S3 C:SF4102 2.3 74.0 1.0 FE4 C:SF4102 2.7 68.2 1.0 FE3 C:SF4102 2.7 75.6 1.0 FE1 C:SF4102 2.7 99.5 1.0 CB C:CYS17 3.1 67.7 1.0 S2 C:SF4102 3.9 76.1 1.0 N C:CYS17 3.9 60.1 1.0 CA C:CYS17 4.1 61.8 1.0 SG C:CYS11 4.7 62.4 1.0 SG C:CYS58 4.7 69.5 1.0 CB C:ALA40 4.8 51.9 1.0 SG C:CYS14 4.8 84.5 1.0 N C:GLN16 4.9 66.2 1.0

S.Capaldi, Z.Guardini, D.Montepietra, V.F.Pagliuca, A.Amelii, D.M.V.Bonnet, A.Chaves-Sanjuan, L.Dall'osto, R.Bassi. Structural Determinants For Red-Shifted Absorption in Higher-Plants Photosystem I To Be Published.