Iron in PDB 9gcz: Xusb Lipoprotein Bound to Ferric Enterobactin

The structure of Xusb Lipoprotein Bound to Ferric Enterobactin, PDB code: 9gcz was solved by A.Silale, H.Mark, A.Basle, B.Van Den Berg, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	38.05 / 1.50
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	59.992, 48.18, 135.466, 90, 96.79, 90
R / Rfree (%)	20.4 / 24.4

The structure of Xusb Lipoprotein Bound to Ferric Enterobactin also contains other interesting chemical elements:

Sodium

(Na)

1 atom

The binding sites of Iron atom in the Xusb Lipoprotein Bound to Ferric Enterobactin (pdb code 9gcz). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Xusb Lipoprotein Bound to Ferric Enterobactin, PDB code: 9gcz:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in the Xusb Lipoprotein Bound to Ferric Enterobactin


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Xusb Lipoprotein Bound to Ferric Enterobactin within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe502 b:9.9 occ:1.00 O3 A:EB4503 2.0 11.8 1.0 O5 A:EB4503 2.1 11.4 1.0 O1 A:EB4503 2.1 10.1 1.0 O2 A:EB4503 2.1 11.6 1.0 O6 A:EB4503 2.1 12.1 1.0 O4 A:EB4503 2.1 10.2 1.0 C5 A:EB4503 2.9 9.8 1.0 C2 A:EB4503 2.9 9.5 1.0 C1 A:EB4503 2.9 12.8 1.0 C4 A:EB4503 2.9 12.5 1.0 C3 A:EB4503 2.9 10.4 1.0 C6 A:EB4503 2.9 11.6 1.0 CE2 A:TYR411 4.0 10.2 1.0 C8 A:EB4503 4.2 11.3 1.0 OH A:TYR411 4.2 8.7 1.0 C17 A:EB4503 4.2 10.1 1.0 C7 A:EB4503 4.2 10.9 1.0 C16 A:EB4503 4.2 12.6 1.0 C18 A:EB4503 4.2 12.2 1.0 C9 A:EB4503 4.3 14.3 1.0 OG A:SER121 4.3 9.3 1.0 CB A:SER168 4.3 8.5 1.0 CB A:ARG167 4.4 11.5 1.0 N A:SER121 4.4 9.3 1.0 OG A:SER168 4.4 9.2 1.0 CB A:SER121 4.4 9.4 1.0 N A:SER168 4.4 9.2 1.0 CB A:ASN120 4.4 11.1 1.0 N1 A:EB4503 4.5 10.1 1.0 N2 A:EB4503 4.5 11.7 1.0 N3 A:EB4503 4.5 12.9 1.0 CZ A:TYR411 4.6 9.9 1.0 CG A:GLN413 4.6 10.6 1.0 CD A:ARG167 4.8 13.0 1.0 C20 A:EB4503 4.9 12.0 1.0 C21 A:EB4503 4.9 14.3 1.0 C19 A:EB4503 4.9 13.7 1.0 CA A:SER168 4.9 10.4 1.0

Iron binding site 2 out of 2 in the Xusb Lipoprotein Bound to Ferric Enterobactin


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Xusb Lipoprotein Bound to Ferric Enterobactin within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe502 b:13.2 occ:1.00 O1 B:EB4503 2.0 15.1 1.0 O6 B:EB4503 2.0 15.6 1.0 O3 B:EB4503 2.0 15.4 1.0 O5 B:EB4503 2.1 13.2 1.0 O4 B:EB4503 2.1 15.6 1.0 O2 B:EB4503 2.1 14.6 1.0 C6 B:EB4503 2.9 17.6 1.0 C3 B:EB4503 2.9 17.5 1.0 C5 B:EB4503 2.9 13.9 1.0 C2 B:EB4503 2.9 16.8 1.0 C1 B:EB4503 2.9 16.0 1.0 C4 B:EB4503 2.9 13.1 1.0 CE2 B:TYR411 3.9 14.6 1.0 CB B:SER168 4.2 12.4 1.0 C8 B:EB4503 4.2 14.8 1.0 C9 B:EB4503 4.2 15.2 1.0 C18 B:EB4503 4.2 19.3 1.0 C17 B:EB4503 4.2 15.4 1.0 C16 B:EB4503 4.2 16.0 1.0 OH B:TYR411 4.2 11.3 1.0 OG B:SER168 4.2 12.8 1.0 OG B:SER121 4.3 14.3 1.0 C7 B:EB4503 4.3 18.3 1.0 N B:SER168 4.3 12.8 1.0 CB B:ARG167 4.3 12.9 1.0 N B:SER121 4.4 17.0 1.0 CB B:ASN120 4.4 15.6 1.0 CB B:SER121 4.5 13.8 1.0 N3 B:EB4503 4.5 18.2 1.0 N1 B:EB4503 4.5 15.2 1.0 CZ B:TYR411 4.5 12.5 1.0 N2 B:EB4503 4.6 17.3 1.0 CG B:GLN413 4.8 18.3 1.0 CD B:ARG167 4.8 14.9 1.0 CA B:SER168 4.8 10.8 1.0 CD2 B:TYR411 4.9 13.8 1.0 C19 B:EB4503 4.9 16.1 1.0 C21 B:EB4503 4.9 17.7 1.0 C20 B:EB4503 5.0 17.8 1.0 CG B:ARG167 5.0 12.7 1.0

A.Silale, Y.L.Soo, H.Mark, A.Basle, B.Van Den Berg. Structural Basis of Iron Piracy By Human Gut Bacteroides To Be Published.