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Iron in PDB 9geq: Native Dimeric Myeloperoxidase Bound to Nucleosome Core Particle; Composite Map

Other elements in 9geq:

The structure of Native Dimeric Myeloperoxidase Bound to Nucleosome Core Particle; Composite Map also contains other interesting chemical elements:

Calcium (Ca) 2 atoms
Chlorine (Cl) 2 atoms

Iron Binding Sites:

The binding sites of Iron atom in the Native Dimeric Myeloperoxidase Bound to Nucleosome Core Particle; Composite Map (pdb code 9geq). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Native Dimeric Myeloperoxidase Bound to Nucleosome Core Particle; Composite Map, PDB code: 9geq:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 9geq

Go back to Iron Binding Sites List in 9geq
Iron binding site 1 out of 2 in the Native Dimeric Myeloperoxidase Bound to Nucleosome Core Particle; Composite Map


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Native Dimeric Myeloperoxidase Bound to Nucleosome Core Particle; Composite Map within 5.0Å range:
probe atom residue distance (Å) B Occ
M:Fe202

b:38.4
occ:1.00
FE M:HEM202 0.0 38.4 1.0
NC M:HEM202 2.1 26.5 1.0
NA M:HEM202 2.1 32.3 1.0
ND M:HEM202 2.1 28.2 1.0
NB M:HEM202 2.1 26.4 1.0
NE2 N:HIS336 2.3 47.7 1.0
C4B M:HEM202 3.0 28.1 1.0
C1B M:HEM202 3.0 27.3 1.0
C1C M:HEM202 3.1 28.1 1.0
C4A M:HEM202 3.1 30.2 1.0
C1A M:HEM202 3.1 30.8 1.0
C1D M:HEM202 3.1 28.2 1.0
C4D M:HEM202 3.1 28.3 1.0
C4C M:HEM202 3.1 23.8 1.0
CE1 N:HIS336 3.2 46.5 1.0
CD2 N:HIS336 3.3 46.3 1.0
CHC M:HEM202 3.4 29.0 1.0
CHB M:HEM202 3.4 28.5 1.0
CHA M:HEM202 3.4 30.6 1.0
CHD M:HEM202 3.4 24.8 1.0
C3B M:HEM202 4.2 29.3 1.0
C2B M:HEM202 4.2 30.3 1.0
C2C M:HEM202 4.3 26.3 1.0
C2D M:HEM202 4.3 28.5 1.0
C3D M:HEM202 4.3 30.2 1.0
C2A M:HEM202 4.3 31.3 1.0
C3C M:HEM202 4.3 24.0 1.0
C3A M:HEM202 4.3 29.5 1.0
ND1 N:HIS336 4.4 44.2 1.0
CG N:HIS336 4.4 40.2 1.0
CD2 N:LEU417 4.9 49.9 1.0

Iron binding site 2 out of 2 in 9geq

Go back to Iron Binding Sites List in 9geq
Iron binding site 2 out of 2 in the Native Dimeric Myeloperoxidase Bound to Nucleosome Core Particle; Composite Map


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Native Dimeric Myeloperoxidase Bound to Nucleosome Core Particle; Composite Map within 5.0Å range:
probe atom residue distance (Å) B Occ
K:Fe202

b:42.5
occ:1.00
FE K:HEM202 0.0 42.5 1.0
NC K:HEM202 2.1 27.2 1.0
NA K:HEM202 2.1 31.1 1.0
ND K:HEM202 2.1 28.8 1.0
NB K:HEM202 2.1 30.4 1.0
NE2 L:HIS336 2.4 46.7 1.0
C1B K:HEM202 3.0 31.5 1.0
C4A K:HEM202 3.0 29.1 1.0
C4B K:HEM202 3.1 27.7 1.0
C4C K:HEM202 3.1 25.2 1.0
C1D K:HEM202 3.1 28.4 1.0
C1C K:HEM202 3.1 27.0 1.0
C1A K:HEM202 3.1 31.9 1.0
C4D K:HEM202 3.1 29.9 1.0
CE1 L:HIS336 3.2 40.4 1.0
CHB K:HEM202 3.4 30.8 1.0
CD2 L:HIS336 3.4 42.0 1.0
CHD K:HEM202 3.4 26.6 1.0
CHC K:HEM202 3.4 27.0 1.0
CHA K:HEM202 3.5 32.8 1.0
C2B K:HEM202 4.1 31.3 1.0
C3B K:HEM202 4.2 29.8 1.0
C3A K:HEM202 4.2 28.3 1.0
C2A K:HEM202 4.3 32.8 1.0
C3C K:HEM202 4.3 24.4 1.0
C2D K:HEM202 4.3 30.2 1.0
C2C K:HEM202 4.3 25.4 1.0
C3D K:HEM202 4.3 30.6 1.0
ND1 L:HIS336 4.4 33.5 1.0
CG L:HIS336 4.5 33.5 1.0
O1A K:HEM202 4.7 47.1 1.0

Reference:

G.L.Burn, T.Raisch, S.Tacke, M.Winkler, D.Prumbaum, S.Thee, S.Raunser, A.Zychlinsky. Myeloperoxidase Transforms Chromatin Into Neutrophil Extracellular Traps To Be Published.
Page generated: Sat Aug 23 03:14:35 2025

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